Wall clock time and date at job start Tue Mar 31 2020 15:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47688 * 2 1 4 4 H 1.09003 * 109.46780 * 54.99586 * 3 2 1 5 5 C 1.50691 * 109.47113 * 174.99773 * 3 2 1 6 6 H 1.08004 * 120.00035 * 120.00491 * 5 3 2 7 7 C 1.37879 * 120.00371 * 299.71899 * 5 3 2 8 8 N 1.31508 * 120.00062 * 180.27756 * 7 5 3 9 9 Si 1.86799 * 119.99670 * 0.28195 * 7 5 3 10 10 H 1.48501 * 109.47055 * 89.99492 * 9 7 5 11 11 H 1.48502 * 109.46964 * 209.99763 * 9 7 5 12 12 H 1.48501 * 109.47253 * 329.99389 * 9 7 5 13 13 N 1.46496 * 109.46805 * 294.99886 * 3 2 1 14 14 C 1.34783 * 120.00253 * 84.99692 * 13 3 2 15 15 O 1.21277 * 119.99788 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00146 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.47002 * 59.99837 * 16 14 13 18 18 C 1.52998 * 109.47277 * 300.00295 * 16 14 13 19 19 O 1.42901 * 109.47087 * 179.97438 * 16 14 13 20 20 C 1.35908 * 116.99967 * 204.89235 * 19 16 14 21 21 C 1.39848 * 120.09574 * 354.56084 * 20 19 16 22 22 N 1.31023 * 121.66464 * 180.02562 * 21 20 19 23 23 C 1.33683 * 121.40137 * 359.97070 * 22 21 20 24 24 C 1.40606 * 121.00537 * 180.02562 * 23 22 21 25 25 C 1.36071 * 119.76373 * 179.97438 * 24 23 22 26 26 C 1.39358 * 121.07450 * 0.03100 * 25 24 23 27 27 C 1.36139 * 120.86281 * 359.97438 * 26 25 24 28 28 C 1.40457 * 119.61717 * 359.96279 * 27 26 25 29 29 C 1.37009 * 120.09300 * 174.28266 * 20 19 16 30 30 H 1.09000 * 109.47233 * 300.00298 * 1 2 3 31 31 H 1.09003 * 109.46788 * 60.00037 * 1 2 3 32 32 H 1.08994 * 109.47435 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47042 * 239.99245 * 2 1 3 34 34 H 1.09003 * 109.46788 * 119.99963 * 2 1 3 35 35 H 0.97001 * 119.99854 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99807 * 265.00082 * 13 3 2 37 37 H 1.09000 * 109.47457 * 179.97438 * 18 16 14 38 38 H 1.09004 * 109.47375 * 300.00098 * 18 16 14 39 39 H 1.09003 * 109.47442 * 59.99710 * 18 16 14 40 40 H 1.07998 * 119.16833 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.11801 * 359.96697 * 24 23 22 42 42 H 1.08002 * 119.46326 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.57101 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.18838 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.93341 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4441 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4534 0.8897 1.3414 9 14 3.0960 0.1145 2.5732 10 1 2.8801 -1.3232 2.2702 11 1 3.7905 0.2463 3.8792 12 1 1.7851 0.8091 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3671 15 8 -0.3391 2.6327 -0.4343 16 6 0.0369 3.3386 -2.6546 17 1 0.0683 2.6144 -3.4687 18 6 1.0075 4.4832 -2.9525 19 8 -1.2887 3.8576 -2.5302 20 6 -1.9976 4.0209 -3.6782 21 6 -1.3887 3.7947 -4.9166 22 7 -2.0428 3.9434 -6.0421 23 6 -3.3258 4.3187 -6.0577 24 6 -4.0199 4.4752 -7.2704 25 6 -5.3257 4.8577 -7.2568 26 6 -5.9920 5.0992 -6.0569 27 6 -5.3535 4.9583 -4.8628 28 6 -4.0057 4.5637 -4.8387 29 6 -3.3125 4.4022 -3.6252 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 5.8763 0.4955 2.1204 36 1 2.2721 2.1229 -1.9978 37 1 0.7196 4.9705 -3.8840 38 1 0.9762 5.2073 -2.1384 39 1 2.0184 4.0869 -3.0475 40 1 -0.3528 3.4906 -4.9461 41 1 -3.5185 4.2927 -8.2093 42 1 -5.8544 4.9760 -8.1911 43 1 -7.0285 5.4021 -6.0744 44 1 -5.8805 5.1480 -3.9394 45 1 -3.8022 4.5770 -2.6786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350932654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:51 Heat of formation + Delta-G solvation = -14.225547 kcal Electronic energy + Delta-G solvation = -27325.139739 eV Core-core repulsion = 23501.262580 eV Total energy + Delta-G solvation = -3823.877159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36021 -39.96939 -38.61806 -36.73441 -35.34339 -33.71829 -32.80298 -32.08494 -30.93466 -30.51556 -29.55457 -27.56777 -24.89165 -24.74276 -23.38906 -22.67412 -22.35548 -20.89119 -19.70864 -18.79510 -18.20690 -18.05557 -16.92392 -16.23299 -15.98582 -15.89883 -15.38932 -14.94342 -14.77661 -14.73717 -14.22126 -14.05944 -13.92496 -13.73135 -13.51941 -13.15792 -13.00615 -12.60771 -12.32051 -12.27746 -12.06443 -11.94848 -11.87216 -11.81213 -11.61341 -11.40125 -11.12797 -10.94619 -10.68354 -10.29133 -9.98241 -9.80939 -9.60684 -9.30801 -9.18481 -8.83275 -8.81024 -8.23726 -8.18233 -6.26210 -4.29377 0.10333 0.57077 1.74053 2.59021 2.68475 3.01780 3.20128 3.32525 3.37066 3.82940 3.84607 4.02935 4.23496 4.27074 4.37536 4.51926 4.64198 4.72789 4.82832 4.85041 4.89902 5.03354 5.07531 5.13432 5.31343 5.49250 5.52240 5.55419 5.70345 5.78158 5.90434 5.97038 5.99056 5.99852 6.11811 6.12742 6.18779 6.50551 6.58841 6.64265 6.76614 6.88245 7.00583 7.18602 7.21379 7.42956 7.55400 8.04619 8.40833 8.67765 8.79154 9.33960 10.85592 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030123 B = 0.002426 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.309645 B =11538.302099 C =11944.140056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.245 3.755 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.694 5.694 14 C 0.509 3.491 15 O -0.525 6.525 16 C 0.060 3.940 17 H 0.096 0.904 18 C -0.177 4.177 19 O -0.274 6.274 20 C 0.084 3.916 21 C 0.066 3.934 22 N -0.439 5.439 23 C 0.090 3.910 24 C -0.079 4.079 25 C -0.117 4.117 26 C -0.108 4.108 27 C -0.105 4.105 28 C -0.061 4.061 29 C -0.109 4.109 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.268 0.732 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.249 7.496 -16.048 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.344 5.344 14 C 0.292 3.708 15 O -0.402 6.402 16 C 0.000 4.000 17 H 0.113 0.887 18 C -0.235 4.235 19 O -0.185 6.185 20 C 0.036 3.964 21 C -0.108 4.108 22 N -0.147 5.147 23 C -0.032 4.032 24 C -0.097 4.097 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.063 4.063 29 C -0.135 4.135 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.183 0.817 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.343 7.324 -15.881 25.344 hybrid contribution -0.266 -0.443 1.065 1.184 sum -18.609 6.881 -14.816 24.762 Atomic orbital electron populations 1.21881 0.96930 0.99173 1.02213 1.22303 0.94333 0.99894 1.01287 1.19198 0.95769 0.88474 0.82400 0.93146 1.21006 0.88403 1.40198 1.07828 0.90080 1.24822 0.94872 0.95096 0.97648 1.69857 1.08692 1.44405 1.29708 0.86920 0.81004 0.79990 0.80957 1.20192 1.22096 1.18423 1.46075 1.14094 1.55846 1.18346 1.19759 0.83238 0.79677 0.88163 1.90717 1.51137 1.58654 1.39653 1.22435 0.81717 0.97017 0.98825 0.88657 1.22371 0.99336 0.98438 1.03331 1.86285 1.26373 1.78562 1.27306 1.19786 0.92464 0.97329 0.86818 1.23353 1.00964 0.99399 0.87087 1.67925 1.07575 1.10240 1.28945 1.18860 0.90322 1.00928 0.93085 1.20776 0.94106 0.98293 0.96570 1.20864 0.94528 0.99853 0.98478 1.20937 1.00216 0.99112 0.92292 1.20968 0.92816 0.99650 0.98905 1.18595 0.95221 0.99735 0.92727 1.20689 0.91696 1.02514 0.98646 0.92796 0.93131 0.94831 0.92166 0.92616 0.92209 0.77056 0.91175 0.90336 0.89466 0.81651 0.84777 0.85360 0.85494 0.85064 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.16 0.32 -2.54 16 2 C -0.14 -3.00 5.11 -26.73 -0.14 -3.14 16 3 C 0.24 5.55 1.83 -69.09 -0.13 5.42 16 4 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 5 C -0.54 -13.90 9.31 -34.44 -0.32 -14.22 16 6 H 0.08 2.19 7.98 -52.48 -0.42 1.77 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 9 Si 0.88 21.28 24.41 -169.99 -4.15 17.13 16 10 H -0.28 -6.45 6.84 56.52 0.39 -6.06 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.22 6.52 56.52 0.37 -5.85 16 13 N -0.69 -12.70 4.91 -54.94 -0.27 -12.97 16 14 C 0.51 9.04 5.80 -10.98 -0.06 8.97 16 15 O -0.53 -11.38 13.64 -14.35 -0.20 -11.58 16 16 C 0.06 0.79 2.64 -27.89 -0.07 0.72 16 17 H 0.10 1.02 6.31 -51.93 -0.33 0.69 16 18 C -0.18 -1.93 9.06 37.16 0.34 -1.59 16 19 O -0.27 -4.02 9.33 -39.36 -0.37 -4.39 16 20 C 0.08 1.08 6.57 -39.43 -0.26 0.82 16 21 C 0.07 0.78 9.39 -17.29 -0.16 0.61 16 22 N -0.44 -5.52 10.33 -10.85 -0.11 -5.64 16 23 C 0.09 1.06 6.60 -84.84 -0.56 0.50 16 24 C -0.08 -0.74 9.98 -39.47 -0.39 -1.14 16 25 C -0.12 -0.87 9.94 -39.94 -0.40 -1.27 16 26 C -0.11 -0.78 9.96 -39.92 -0.40 -1.18 16 27 C -0.10 -0.91 9.77 -39.50 -0.39 -1.30 16 28 C -0.06 -0.68 5.74 -106.81 -0.61 -1.30 16 29 C -0.11 -1.29 9.82 -39.10 -0.38 -1.68 16 30 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 31 H 0.05 0.98 5.65 -51.93 -0.29 0.68 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.27 3.24 -51.93 -0.17 1.10 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.40 6.16 7.96 -40.82 -0.32 5.83 16 37 H 0.07 0.63 6.90 -51.93 -0.36 0.28 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.84 7.57 -51.93 -0.39 0.45 16 40 H 0.17 1.56 5.37 -52.49 -0.28 1.28 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -32.54 361.01 -8.48 -41.02 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.88 Total: 6.17 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.72 Total: -10.23 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.39 Total: -43.57 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.56 Total: -15.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.15 Total: 17.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.54 -8.48 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350932654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.796 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds