Wall clock time and date at job start Tue Mar 31 2020 15:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47688 * 2 1 4 4 H 1.09003 * 109.46780 * 54.99586 * 3 2 1 5 5 C 1.50691 * 109.47113 * 174.99773 * 3 2 1 6 6 H 1.08004 * 120.00035 * 120.00491 * 5 3 2 7 7 C 1.37879 * 120.00371 * 299.71899 * 5 3 2 8 8 N 1.31508 * 120.00062 * 180.27756 * 7 5 3 9 9 Si 1.86799 * 119.99670 * 0.28195 * 7 5 3 10 10 H 1.48501 * 109.47055 * 89.99492 * 9 7 5 11 11 H 1.48502 * 109.46964 * 209.99763 * 9 7 5 12 12 H 1.48501 * 109.47253 * 329.99389 * 9 7 5 13 13 N 1.46496 * 109.46805 * 294.99886 * 3 2 1 14 14 C 1.34783 * 120.00253 * 84.99692 * 13 3 2 15 15 O 1.21277 * 119.99788 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00146 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.47002 * 59.99837 * 16 14 13 18 18 C 1.52998 * 109.47277 * 300.00295 * 16 14 13 19 19 O 1.42901 * 109.47087 * 179.97438 * 16 14 13 20 20 C 1.35908 * 116.99967 * 204.89235 * 19 16 14 21 21 C 1.39848 * 120.09574 * 354.56084 * 20 19 16 22 22 N 1.31023 * 121.66464 * 180.02562 * 21 20 19 23 23 C 1.33683 * 121.40137 * 359.97070 * 22 21 20 24 24 C 1.40606 * 121.00537 * 180.02562 * 23 22 21 25 25 C 1.36071 * 119.76373 * 179.97438 * 24 23 22 26 26 C 1.39358 * 121.07450 * 0.03100 * 25 24 23 27 27 C 1.36139 * 120.86281 * 359.97438 * 26 25 24 28 28 C 1.40457 * 119.61717 * 359.96279 * 27 26 25 29 29 C 1.37009 * 120.09300 * 174.28266 * 20 19 16 30 30 H 1.09000 * 109.47233 * 300.00298 * 1 2 3 31 31 H 1.09003 * 109.46788 * 60.00037 * 1 2 3 32 32 H 1.08994 * 109.47435 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47042 * 239.99245 * 2 1 3 34 34 H 1.09003 * 109.46788 * 119.99963 * 2 1 3 35 35 H 0.97001 * 119.99854 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99807 * 265.00082 * 13 3 2 37 37 H 1.09000 * 109.47457 * 179.97438 * 18 16 14 38 38 H 1.09004 * 109.47375 * 300.00098 * 18 16 14 39 39 H 1.09003 * 109.47442 * 59.99710 * 18 16 14 40 40 H 1.07998 * 119.16833 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.11801 * 359.96697 * 24 23 22 42 42 H 1.08002 * 119.46326 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.57101 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.18838 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.93341 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4441 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4534 0.8897 1.3414 9 14 3.0960 0.1145 2.5732 10 1 2.8801 -1.3232 2.2702 11 1 3.7905 0.2463 3.8792 12 1 1.7851 0.8091 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3671 15 8 -0.3391 2.6327 -0.4343 16 6 0.0369 3.3386 -2.6546 17 1 0.0683 2.6144 -3.4687 18 6 1.0075 4.4832 -2.9525 19 8 -1.2887 3.8576 -2.5302 20 6 -1.9976 4.0209 -3.6782 21 6 -1.3887 3.7947 -4.9166 22 7 -2.0428 3.9434 -6.0421 23 6 -3.3258 4.3187 -6.0577 24 6 -4.0199 4.4752 -7.2704 25 6 -5.3257 4.8577 -7.2568 26 6 -5.9920 5.0992 -6.0569 27 6 -5.3535 4.9583 -4.8628 28 6 -4.0057 4.5637 -4.8387 29 6 -3.3125 4.4022 -3.6252 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 5.8763 0.4955 2.1204 36 1 2.2721 2.1229 -1.9978 37 1 0.7196 4.9705 -3.8840 38 1 0.9762 5.2073 -2.1384 39 1 2.0184 4.0869 -3.0475 40 1 -0.3528 3.4906 -4.9461 41 1 -3.5185 4.2927 -8.2093 42 1 -5.8544 4.9760 -8.1911 43 1 -7.0285 5.4021 -6.0744 44 1 -5.8805 5.1480 -3.9394 45 1 -3.8022 4.5770 -2.6786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350932654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:49 Heat of formation + Delta-G solvation = -35.212313 kcal Electronic energy + Delta-G solvation = -27326.049793 eV Core-core repulsion = 23501.262580 eV Total energy + Delta-G solvation = -3824.787213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.22676 -41.16646 -39.78401 -37.56787 -37.01096 -34.71580 -34.36212 -33.68574 -32.17426 -31.25607 -30.36268 -29.39041 -25.97301 -25.56014 -24.67000 -24.06117 -23.15959 -22.34665 -21.27820 -19.67499 -19.49307 -18.95900 -18.35831 -17.58771 -17.27885 -17.00669 -16.56218 -16.22637 -16.09128 -15.63797 -15.39530 -15.10984 -14.98649 -14.83098 -14.69195 -14.39933 -14.09268 -14.02038 -13.85138 -13.66312 -13.33388 -13.05749 -12.98792 -12.78351 -12.69657 -12.63139 -12.44347 -12.37215 -12.26113 -11.86995 -11.40211 -11.25108 -11.10590 -10.87179 -10.75071 -10.54763 -9.83947 -9.58178 -9.02933 -8.37930 -6.43049 -0.64807 -0.20673 0.97576 1.26610 1.35504 1.44384 1.53271 1.64435 1.91832 2.25731 2.61739 2.97969 3.06919 3.23865 3.37396 3.63274 3.64628 3.75170 3.83728 3.88420 4.02466 4.21295 4.21738 4.29652 4.30402 4.43608 4.44479 4.54187 4.63459 4.74611 4.78869 4.82388 4.98730 4.99550 5.08463 5.09029 5.12178 5.19186 5.33889 5.38692 5.45258 5.49448 5.50175 5.60222 5.87236 6.06265 6.16843 6.58862 6.72668 6.79952 7.18519 7.37645 8.76798 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030123 B = 0.002426 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.309645 B =11538.302099 C =11944.140056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.022 0.978 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.932 3.068 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.262 1.262 13 N -0.690 5.690 14 C 0.507 3.493 15 O -0.567 6.567 16 C 0.069 3.931 17 H 0.126 0.874 18 C -0.172 4.172 19 O -0.298 6.298 20 C 0.065 3.935 21 C 0.062 3.938 22 N -0.455 5.455 23 C 0.068 3.932 24 C -0.099 4.099 25 C -0.104 4.104 26 C -0.100 4.100 27 C -0.116 4.116 28 C -0.077 4.077 29 C -0.114 4.114 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.270 0.730 36 H 0.410 0.590 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.185 0.815 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.149 0.851 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.722 7.543 -18.156 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.040 0.960 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.169 4.169 8 N -0.570 5.570 9 Si 0.759 3.241 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.187 1.187 13 N -0.341 5.341 14 C 0.293 3.707 15 O -0.446 6.446 16 C 0.009 3.991 17 H 0.143 0.857 18 C -0.229 4.229 19 O -0.210 6.210 20 C 0.018 3.982 21 C -0.112 4.112 22 N -0.164 5.164 23 C -0.054 4.054 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.134 4.134 28 C -0.079 4.079 29 C -0.141 4.141 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.247 0.753 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.202 0.798 41 H 0.161 0.839 42 H 0.179 0.821 43 H 0.178 0.822 44 H 0.167 0.833 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.820 7.377 -18.034 28.515 hybrid contribution 0.356 -0.350 1.592 1.668 sum -20.464 7.027 -16.442 27.175 Atomic orbital electron populations 1.21767 0.95473 1.00561 1.01411 1.22225 0.95558 0.98541 1.01339 1.18813 0.93426 0.89575 0.83551 0.96033 1.21247 0.90059 1.38619 1.06884 0.91929 1.25493 0.95651 0.95957 0.99753 1.69960 1.10162 1.46196 1.30681 0.86108 0.79355 0.80021 0.78581 1.18571 1.22224 1.18666 1.45839 1.15005 1.55804 1.17413 1.20494 0.82181 0.78699 0.89342 1.90695 1.52229 1.60037 1.41649 1.22364 0.82019 0.98189 0.96485 0.85661 1.22374 0.99441 0.97358 1.03764 1.86234 1.26933 1.79190 1.28668 1.19886 0.92781 0.98962 0.86615 1.23566 1.01725 0.99359 0.86524 1.67947 1.08268 1.10957 1.29212 1.19292 0.90445 1.01342 0.94291 1.21017 0.95151 0.99447 0.96144 1.21308 0.93731 0.97311 1.00044 1.21386 1.01639 0.97247 0.91528 1.21266 0.91942 0.99632 1.00575 1.18817 0.96449 1.00448 0.92204 1.20926 0.91727 1.02068 0.99370 0.94637 0.92951 0.92239 0.90815 0.93761 0.92105 0.75344 0.88905 0.91964 0.88084 0.79792 0.83911 0.82104 0.82165 0.83301 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.52 71.98 0.61 -4.56 16 2 C -0.14 -5.79 5.11 30.59 0.16 -5.64 16 3 C 0.25 11.40 1.83 44.24 0.08 11.49 16 4 H 0.02 1.12 6.63 -2.39 -0.02 1.11 16 5 C -0.53 -27.78 9.31 25.60 0.24 -27.54 16 6 H 0.06 3.44 7.98 -2.91 -0.02 3.42 16 7 C 0.03 1.74 5.45 84.66 0.46 2.20 16 8 N -0.93 -54.76 13.96 21.45 0.30 -54.46 16 9 Si 0.93 44.19 24.41 68.60 1.67 45.86 16 10 H -0.26 -11.61 6.84 99.48 0.68 -10.93 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.26 -12.42 6.52 99.48 0.65 -11.77 16 13 N -0.69 -24.96 4.91 -446.11 -2.19 -27.15 16 14 C 0.51 17.89 5.80 87.66 0.51 18.40 16 15 O -0.57 -24.89 13.64 16.02 0.22 -24.68 16 16 C 0.07 1.75 2.64 29.85 0.08 1.83 16 17 H 0.13 2.42 6.31 -2.39 -0.02 2.41 16 18 C -0.17 -3.52 9.06 71.98 0.65 -2.87 16 19 O -0.30 -8.69 9.33 -73.47 -0.69 -9.38 16 20 C 0.07 1.64 6.57 22.37 0.15 1.79 16 21 C 0.06 1.40 9.39 85.20 0.80 2.20 16 22 N -0.46 -11.12 10.33 -188.23 -1.95 -13.07 16 23 C 0.07 1.54 6.60 40.30 0.27 1.81 16 24 C -0.10 -1.69 9.98 22.34 0.22 -1.46 16 25 C -0.10 -1.20 9.94 22.04 0.22 -0.98 16 26 C -0.10 -1.11 9.96 22.05 0.22 -0.89 16 27 C -0.12 -1.77 9.77 22.32 0.22 -1.55 16 28 C -0.08 -1.67 5.74 -21.28 -0.12 -1.79 16 29 C -0.11 -2.70 9.82 22.58 0.22 -2.48 16 30 H 0.03 1.47 7.85 -2.39 -0.02 1.45 16 31 H 0.05 1.97 5.65 -2.39 -0.01 1.96 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.04 1.96 3.24 -2.39 -0.01 1.95 16 35 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.41 12.37 7.96 -92.71 -0.74 11.64 16 37 H 0.09 1.50 6.90 -2.39 -0.02 1.49 16 38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.10 1.77 7.57 -2.39 -0.02 1.75 16 40 H 0.19 3.15 5.37 -2.91 -0.02 3.13 16 41 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 43 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 44 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -72.34 361.01 2.56 -69.78 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.21 Total: 23.14 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.98 Total: -10.04 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -3.84 Total: -94.69 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.47 Total: -34.05 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.86 kcal Total: -72.34 2.56 -69.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350932654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.567 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds