Wall clock time and date at job start Tue Mar 31 2020 15:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47266 * 2 1 4 4 H 1.08997 * 109.46939 * 55.00069 * 3 2 1 5 5 C 1.50697 * 109.47177 * 175.00470 * 3 2 1 6 6 H 1.08002 * 120.00154 * 120.00084 * 5 3 2 7 7 C 1.37878 * 119.99957 * 299.99858 * 5 3 2 8 8 N 1.31509 * 120.00066 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99859 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.47113 * 90.00218 * 9 7 5 11 11 H 1.48501 * 109.47569 * 209.99981 * 9 7 5 12 12 H 1.48497 * 109.47399 * 330.00237 * 9 7 5 13 13 N 1.46497 * 109.46963 * 295.00458 * 3 2 1 14 14 C 1.34773 * 120.00311 * 84.99911 * 13 3 2 15 15 O 1.21278 * 119.99934 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00333 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.47185 * 305.00185 * 16 14 13 18 18 C 1.52997 * 109.47116 * 64.99607 * 16 14 13 19 19 O 1.42898 * 109.47250 * 185.00084 * 16 14 13 20 20 C 1.35912 * 117.00048 * 155.26715 * 19 16 14 21 21 C 1.39844 * 120.09354 * 5.36495 * 20 19 16 22 22 N 1.31021 * 121.66358 * 180.02562 * 21 20 19 23 23 C 1.33685 * 121.40113 * 0.02562 * 22 21 20 24 24 C 1.40601 * 121.00148 * 180.02562 * 23 22 21 25 25 C 1.36075 * 119.76781 * 179.97438 * 24 23 22 26 26 C 1.39360 * 121.06756 * 0.04378 * 25 24 23 27 27 C 1.36129 * 120.86480 * 359.97438 * 26 25 24 28 28 C 1.40467 * 119.62127 * 0.02562 * 27 26 25 29 29 C 1.37006 * 120.09317 * 185.09135 * 20 19 16 30 30 H 1.09003 * 109.46561 * 299.99777 * 1 2 3 31 31 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47080 * 59.99893 * 1 2 3 33 33 H 1.08997 * 109.47274 * 120.00608 * 2 1 3 34 34 H 1.09003 * 109.47044 * 240.00002 * 2 1 3 35 35 H 0.96998 * 119.99947 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99992 * 264.99877 * 13 3 2 37 37 H 1.09003 * 109.47749 * 300.00342 * 18 16 14 38 38 H 1.09007 * 109.47213 * 60.00653 * 18 16 14 39 39 H 1.09003 * 109.47369 * 180.02562 * 18 16 14 40 40 H 1.08005 * 119.17015 * 359.97438 * 21 20 19 41 41 H 1.07998 * 120.11681 * 359.97438 * 24 23 22 42 42 H 1.07990 * 119.46838 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.57068 * 180.02562 * 26 25 24 44 44 H 1.08008 * 120.19091 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.93382 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8784 1.2278 8 7 5.4540 0.8803 1.3360 9 14 3.0965 0.1088 2.5700 10 1 2.8757 -1.3274 2.2632 11 1 3.7937 0.2346 3.8751 12 1 1.7878 0.8072 2.6386 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3395 2.6319 -0.4343 16 6 0.0366 3.3387 -2.6543 17 1 0.7774 4.0953 -2.9127 18 6 -0.0403 2.2975 -3.7728 19 8 -1.2407 3.9586 -2.4919 20 6 -1.5266 5.0060 -3.3093 21 6 -0.6391 5.3617 -4.3299 22 7 -0.8837 6.3659 -5.1351 23 6 -1.9957 7.0985 -5.0170 24 6 -2.2501 8.1741 -5.8861 25 6 -3.3904 8.9027 -5.7436 26 6 -4.3161 8.6020 -4.7461 27 6 -4.1046 7.5686 -3.8856 28 6 -2.9382 6.7948 -4.0033 29 6 -2.6879 5.7129 -3.1395 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 5.8771 0.4825 2.1130 36 1 2.2719 2.1232 -1.9978 37 1 0.9339 1.8246 -3.8967 38 1 -0.7812 1.5408 -3.5145 39 1 -0.3282 2.7853 -4.7041 40 1 0.2714 4.7948 -4.4570 41 1 -1.5429 8.4210 -6.6640 42 1 -3.5811 9.7276 -6.4140 43 1 -5.2134 9.1961 -4.6551 44 1 -4.8291 7.3455 -3.1163 45 1 -3.3883 5.4509 -2.3604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350932655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:58 Heat of formation + Delta-G solvation = -14.237614 kcal Electronic energy + Delta-G solvation = -27307.036530 eV Core-core repulsion = 23483.158847 eV Total energy + Delta-G solvation = -3823.877682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35225 -39.96919 -38.61643 -36.72533 -35.34261 -33.70254 -32.77241 -32.05993 -31.01199 -30.51135 -29.56412 -27.53915 -24.91080 -24.73510 -23.38006 -22.67908 -22.34804 -20.87747 -19.71573 -18.78678 -18.19628 -18.05404 -16.91922 -16.25709 -15.92720 -15.78170 -15.54824 -14.98822 -14.92690 -14.49884 -14.32941 -13.94427 -13.90803 -13.71954 -13.45766 -13.17671 -13.12712 -12.59892 -12.38830 -12.18260 -12.05713 -12.00602 -11.85967 -11.83553 -11.62675 -11.38165 -11.11295 -10.95003 -10.67714 -10.28903 -9.98011 -9.79421 -9.60549 -9.30680 -9.18319 -8.82118 -8.81051 -8.22427 -8.18830 -6.26133 -4.29379 0.11441 0.58124 1.75066 2.59643 2.69618 3.00763 3.19975 3.32553 3.37062 3.84081 3.84879 4.03822 4.24467 4.27050 4.38516 4.52973 4.64280 4.73207 4.82138 4.85990 4.90798 5.03630 5.07486 5.14364 5.29737 5.46080 5.52346 5.53571 5.71176 5.78858 5.88444 5.94786 5.97586 6.00771 6.12167 6.13759 6.19688 6.51547 6.59194 6.64485 6.76830 6.89015 7.00689 7.18807 7.21549 7.42937 7.56638 8.04698 8.40865 8.67854 8.79204 9.33971 10.85717 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026614 B = 0.002420 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.831022 B =11565.933981 C =11829.687260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.245 3.755 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.694 5.694 14 C 0.509 3.491 15 O -0.525 6.525 16 C 0.059 3.941 17 H 0.097 0.903 18 C -0.176 4.176 19 O -0.275 6.275 20 C 0.084 3.916 21 C 0.066 3.934 22 N -0.439 5.439 23 C 0.090 3.910 24 C -0.079 4.079 25 C -0.117 4.117 26 C -0.108 4.108 27 C -0.105 4.105 28 C -0.061 4.061 29 C -0.109 4.109 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.268 0.732 36 H 0.396 0.604 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.167 0.833 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.600 11.002 -14.762 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.344 5.344 14 C 0.292 3.708 15 O -0.401 6.401 16 C -0.001 4.001 17 H 0.114 0.886 18 C -0.234 4.234 19 O -0.185 6.185 20 C 0.036 3.964 21 C -0.108 4.108 22 N -0.147 5.147 23 C -0.032 4.032 24 C -0.097 4.097 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.063 4.063 29 C -0.135 4.135 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.184 0.816 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.557 11.116 -14.488 24.649 hybrid contribution -0.408 -0.759 0.953 1.285 sum -16.965 10.357 -13.535 24.048 Atomic orbital electron populations 1.21888 0.96892 0.99161 1.02288 1.22297 0.94368 0.99828 1.01266 1.19198 0.95753 0.88515 0.82381 0.93181 1.21014 0.88419 1.40070 1.07990 0.90090 1.24824 0.94871 0.95095 0.97644 1.69858 1.08682 1.44309 1.29824 0.86916 0.80984 0.79986 0.80946 1.20177 1.22109 1.18432 1.46071 1.14082 1.55895 1.18317 1.19749 0.83187 0.79967 0.87913 1.90717 1.51127 1.58580 1.39717 1.22430 0.84990 0.96184 0.96454 0.88566 1.22359 1.04660 0.99328 0.97044 1.86282 1.34595 1.42375 1.55291 1.19785 0.95499 0.89448 0.91691 1.23355 0.99703 0.95737 0.91982 1.67927 1.18232 1.04263 1.24242 1.18860 0.91209 0.97012 0.96099 1.20778 0.97490 0.93343 0.98123 1.20864 0.94142 1.00032 0.98684 1.20934 0.99413 0.97207 0.95002 1.20966 0.96068 0.95482 0.99828 1.18596 0.96055 0.95878 0.95756 1.20681 0.97021 0.94803 1.01035 0.92842 0.94855 0.92963 0.92655 0.92160 0.92203 0.77060 0.89579 0.90494 0.91095 0.81636 0.84767 0.85357 0.85497 0.85070 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.51 37.16 0.32 -2.52 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.10 16 3 C 0.24 5.55 1.83 -69.08 -0.13 5.42 16 4 H 0.05 1.27 6.64 -51.93 -0.34 0.93 16 5 C -0.54 -13.97 9.31 -34.44 -0.32 -14.30 16 6 H 0.08 2.20 7.98 -52.49 -0.42 1.79 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.83 13.96 55.43 0.77 -25.05 16 9 Si 0.88 21.31 24.41 -169.99 -4.15 17.16 16 10 H -0.27 -6.43 6.83 56.52 0.39 -6.05 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.69 -12.71 4.98 -54.94 -0.27 -12.98 16 14 C 0.51 9.04 5.75 -10.99 -0.06 8.97 16 15 O -0.52 -11.37 13.64 -14.30 -0.20 -11.57 16 16 C 0.06 0.79 2.64 -27.88 -0.07 0.71 16 17 H 0.10 1.06 6.31 -51.93 -0.33 0.73 16 18 C -0.18 -1.82 9.12 37.16 0.34 -1.49 16 19 O -0.27 -4.03 9.33 -39.32 -0.37 -4.39 16 20 C 0.08 1.08 6.57 -39.43 -0.26 0.83 16 21 C 0.07 0.79 9.39 -17.30 -0.16 0.63 16 22 N -0.44 -5.60 10.33 -10.85 -0.11 -5.71 16 23 C 0.09 1.08 6.60 -84.85 -0.56 0.52 16 24 C -0.08 -0.75 9.98 -39.47 -0.39 -1.15 16 25 C -0.12 -0.89 9.94 -39.94 -0.40 -1.28 16 26 C -0.11 -0.79 9.95 -39.92 -0.40 -1.19 16 27 C -0.10 -0.92 9.77 -39.50 -0.39 -1.31 16 28 C -0.06 -0.69 5.74 -106.81 -0.61 -1.30 16 29 C -0.11 -1.30 9.82 -39.10 -0.38 -1.69 16 30 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.99 5.64 -51.93 -0.29 0.70 16 33 H 0.06 1.25 3.21 -51.93 -0.17 1.09 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.40 6.16 8.32 -40.82 -0.34 5.82 16 37 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.61 6.89 -51.93 -0.36 0.26 16 40 H 0.17 1.59 5.37 -52.48 -0.28 1.31 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 45 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -32.67 361.77 -8.50 -41.18 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.92 Total: 6.08 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.72 Total: -10.16 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.39 Total: -43.74 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.56 Total: -15.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.15 Total: 17.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.67 -8.50 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350932655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.938 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds