Wall clock time and date at job start Tue Mar 31 2020 15:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47266 * 2 1 4 4 H 1.08997 * 109.46939 * 55.00069 * 3 2 1 5 5 C 1.50697 * 109.47177 * 175.00470 * 3 2 1 6 6 H 1.08002 * 120.00154 * 120.00084 * 5 3 2 7 7 C 1.37878 * 119.99957 * 299.99858 * 5 3 2 8 8 N 1.31509 * 120.00066 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99859 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.47113 * 90.00218 * 9 7 5 11 11 H 1.48501 * 109.47569 * 209.99981 * 9 7 5 12 12 H 1.48497 * 109.47399 * 330.00237 * 9 7 5 13 13 N 1.46497 * 109.46963 * 295.00458 * 3 2 1 14 14 C 1.34773 * 120.00311 * 84.99911 * 13 3 2 15 15 O 1.21278 * 119.99934 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00333 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.47185 * 305.00185 * 16 14 13 18 18 C 1.52997 * 109.47116 * 64.99607 * 16 14 13 19 19 O 1.42898 * 109.47250 * 185.00084 * 16 14 13 20 20 C 1.35912 * 117.00048 * 155.26715 * 19 16 14 21 21 C 1.39844 * 120.09354 * 5.36495 * 20 19 16 22 22 N 1.31021 * 121.66358 * 180.02562 * 21 20 19 23 23 C 1.33685 * 121.40113 * 0.02562 * 22 21 20 24 24 C 1.40601 * 121.00148 * 180.02562 * 23 22 21 25 25 C 1.36075 * 119.76781 * 179.97438 * 24 23 22 26 26 C 1.39360 * 121.06756 * 0.04378 * 25 24 23 27 27 C 1.36129 * 120.86480 * 359.97438 * 26 25 24 28 28 C 1.40467 * 119.62127 * 0.02562 * 27 26 25 29 29 C 1.37006 * 120.09317 * 185.09135 * 20 19 16 30 30 H 1.09003 * 109.46561 * 299.99777 * 1 2 3 31 31 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47080 * 59.99893 * 1 2 3 33 33 H 1.08997 * 109.47274 * 120.00608 * 2 1 3 34 34 H 1.09003 * 109.47044 * 240.00002 * 2 1 3 35 35 H 0.96998 * 119.99947 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99992 * 264.99877 * 13 3 2 37 37 H 1.09003 * 109.47749 * 300.00342 * 18 16 14 38 38 H 1.09007 * 109.47213 * 60.00653 * 18 16 14 39 39 H 1.09003 * 109.47369 * 180.02562 * 18 16 14 40 40 H 1.08005 * 119.17015 * 359.97438 * 21 20 19 41 41 H 1.07998 * 120.11681 * 359.97438 * 24 23 22 42 42 H 1.07990 * 119.46838 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.57068 * 180.02562 * 26 25 24 44 44 H 1.08008 * 120.19091 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.93382 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8784 1.2278 8 7 5.4540 0.8803 1.3360 9 14 3.0965 0.1088 2.5700 10 1 2.8757 -1.3274 2.2632 11 1 3.7937 0.2346 3.8751 12 1 1.7878 0.8072 2.6386 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3395 2.6319 -0.4343 16 6 0.0366 3.3387 -2.6543 17 1 0.7774 4.0953 -2.9127 18 6 -0.0403 2.2975 -3.7728 19 8 -1.2407 3.9586 -2.4919 20 6 -1.5266 5.0060 -3.3093 21 6 -0.6391 5.3617 -4.3299 22 7 -0.8837 6.3659 -5.1351 23 6 -1.9957 7.0985 -5.0170 24 6 -2.2501 8.1741 -5.8861 25 6 -3.3904 8.9027 -5.7436 26 6 -4.3161 8.6020 -4.7461 27 6 -4.1046 7.5686 -3.8856 28 6 -2.9382 6.7948 -4.0033 29 6 -2.6879 5.7129 -3.1395 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 5.8771 0.4825 2.1130 36 1 2.2719 2.1232 -1.9978 37 1 0.9339 1.8246 -3.8967 38 1 -0.7812 1.5408 -3.5145 39 1 -0.3282 2.7853 -4.7041 40 1 0.2714 4.7948 -4.4570 41 1 -1.5429 8.4210 -6.6640 42 1 -3.5811 9.7276 -6.4140 43 1 -5.2134 9.1961 -4.6551 44 1 -4.8291 7.3455 -3.1163 45 1 -3.3883 5.4509 -2.3604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350932655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:57 Heat of formation + Delta-G solvation = -35.437620 kcal Electronic energy + Delta-G solvation = -27307.955831 eV Core-core repulsion = 23483.158847 eV Total energy + Delta-G solvation = -3824.796984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22839 -41.16879 -39.78410 -37.56907 -37.00981 -34.69373 -34.36607 -33.63872 -32.24488 -31.26045 -30.37437 -29.35874 -25.96633 -25.56449 -24.66757 -24.07041 -23.16022 -22.32784 -21.28362 -19.67795 -19.49170 -18.96522 -18.35923 -17.54821 -17.26034 -16.91318 -16.81248 -16.26951 -15.96878 -15.63726 -15.26440 -15.23843 -14.92193 -14.85403 -14.69003 -14.39406 -14.16137 -14.01866 -13.76079 -13.69458 -13.32729 -13.05914 -12.98529 -12.79560 -12.69048 -12.63489 -12.43639 -12.36448 -12.24274 -11.86750 -11.39382 -11.25054 -11.10720 -10.87247 -10.74679 -10.55054 -9.83938 -9.58519 -9.03179 -8.38449 -6.43791 -0.65072 -0.20948 0.97242 1.26392 1.35325 1.44311 1.55837 1.61649 1.91493 2.25394 2.62063 2.97506 3.06629 3.23784 3.37234 3.63101 3.64464 3.75937 3.84099 3.89264 4.02546 4.21151 4.23357 4.29488 4.31896 4.43906 4.45327 4.55193 4.64497 4.74780 4.78594 4.83157 4.98821 5.00789 5.08472 5.10640 5.11562 5.21751 5.33682 5.38688 5.44936 5.49855 5.51259 5.60130 5.86995 6.05658 6.16520 6.58226 6.72442 6.79916 7.18025 7.37501 8.76409 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026614 B = 0.002420 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.831022 B =11565.933981 C =11829.687260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.021 0.979 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.031 3.969 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.262 1.262 13 N -0.690 5.690 14 C 0.508 3.492 15 O -0.567 6.567 16 C 0.067 3.933 17 H 0.120 0.880 18 C -0.170 4.170 19 O -0.298 6.298 20 C 0.065 3.935 21 C 0.062 3.938 22 N -0.456 5.456 23 C 0.067 3.933 24 C -0.100 4.100 25 C -0.104 4.104 26 C -0.100 4.100 27 C -0.115 4.115 28 C -0.078 4.078 29 C -0.114 4.114 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.270 0.730 36 H 0.410 0.590 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.185 0.815 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.150 0.850 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.707 11.858 -16.504 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.039 0.961 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.760 3.240 10 H -0.184 1.184 11 H -0.223 1.223 12 H -0.187 1.187 13 N -0.341 5.341 14 C 0.293 3.707 15 O -0.446 6.446 16 C 0.008 3.992 17 H 0.137 0.863 18 C -0.227 4.227 19 O -0.210 6.210 20 C 0.017 3.983 21 C -0.112 4.112 22 N -0.165 5.165 23 C -0.054 4.054 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.134 4.134 28 C -0.079 4.079 29 C -0.141 4.141 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.246 0.754 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.202 0.798 41 H 0.161 0.839 42 H 0.179 0.821 43 H 0.179 0.821 44 H 0.167 0.833 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.668 11.978 -16.275 27.511 hybrid contribution 0.150 -0.823 1.404 1.635 sum -18.518 11.155 -14.871 26.239 Atomic orbital electron populations 1.21774 0.95373 1.00592 1.01505 1.22211 0.95640 0.98353 1.01336 1.18815 0.93345 0.89708 0.83508 0.96145 1.21260 0.90126 1.38526 1.07039 0.92055 1.25503 0.95657 0.95940 0.99763 1.69962 1.10184 1.46101 1.30818 0.86094 0.79290 0.80073 0.78506 1.18431 1.22266 1.18697 1.45836 1.14971 1.55892 1.17380 1.20484 0.82121 0.79012 0.89059 1.90695 1.52201 1.60011 1.41681 1.22379 0.85446 0.97189 0.94224 0.86274 1.22365 1.05437 0.98375 0.96541 1.86228 1.35040 1.43275 1.56446 1.19884 0.96400 0.89650 0.92345 1.23566 1.00152 0.95856 0.91647 1.67945 1.18968 1.04788 1.24751 1.19295 0.91324 0.97800 0.96982 1.21017 0.98882 0.93429 0.98471 1.21309 0.92835 0.99780 0.98453 1.21387 1.00228 0.96440 0.93743 1.21269 0.95597 0.95665 1.00859 1.18824 0.97140 0.96244 0.95740 1.20924 0.96988 0.94912 1.01245 0.94795 0.92207 0.92641 0.93857 0.90706 0.92087 0.75355 0.87855 0.91448 0.89056 0.79848 0.83941 0.82093 0.82129 0.83252 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.51 71.98 0.61 -4.50 16 2 C -0.14 -5.70 5.11 30.60 0.16 -5.54 16 3 C 0.25 11.41 1.83 44.25 0.08 11.49 16 4 H 0.02 1.07 6.64 -2.39 -0.02 1.05 16 5 C -0.53 -28.00 9.31 25.60 0.24 -27.76 16 6 H 0.06 3.40 7.98 -2.91 -0.02 3.38 16 7 C 0.03 1.74 5.45 84.66 0.46 2.20 16 8 N -0.93 -55.01 13.96 21.45 0.30 -54.71 16 9 Si 0.93 44.26 24.41 68.60 1.67 45.93 16 10 H -0.26 -11.51 6.83 99.48 0.68 -10.83 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.26 -12.45 6.53 99.48 0.65 -11.80 16 13 N -0.69 -24.99 4.98 -446.11 -2.22 -27.21 16 14 C 0.51 17.89 5.75 87.66 0.50 18.40 16 15 O -0.57 -24.86 13.64 15.97 0.22 -24.65 16 16 C 0.07 1.71 2.64 29.85 0.08 1.79 16 17 H 0.12 2.46 6.31 -2.39 -0.02 2.45 16 18 C -0.17 -3.20 9.12 71.98 0.66 -2.54 16 19 O -0.30 -8.70 9.33 -73.57 -0.69 -9.39 16 20 C 0.06 1.66 6.57 22.37 0.15 1.81 16 21 C 0.06 1.43 9.39 85.20 0.80 2.23 16 22 N -0.46 -11.44 10.33 -188.24 -1.95 -13.38 16 23 C 0.07 1.57 6.60 40.29 0.27 1.83 16 24 C -0.10 -1.74 9.98 22.34 0.22 -1.52 16 25 C -0.10 -1.24 9.94 22.04 0.22 -1.02 16 26 C -0.10 -1.14 9.95 22.05 0.22 -0.92 16 27 C -0.12 -1.80 9.77 22.32 0.22 -1.58 16 28 C -0.08 -1.70 5.74 -21.28 -0.12 -1.82 16 29 C -0.11 -2.73 9.82 22.58 0.22 -2.51 16 30 H 0.03 1.39 7.85 -2.39 -0.02 1.38 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 2.04 5.64 -2.39 -0.01 2.03 16 33 H 0.04 1.91 3.21 -2.39 -0.01 1.90 16 34 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 36 H 0.41 12.40 8.32 -92.70 -0.77 11.62 16 37 H 0.10 1.58 7.92 -2.39 -0.02 1.56 16 38 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.09 1.38 6.89 -2.39 -0.02 1.36 16 40 H 0.18 3.27 5.37 -2.91 -0.02 3.26 16 41 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.16 0.84 8.06 -2.92 -0.02 0.82 16 43 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 44 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -72.79 361.77 2.49 -70.30 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.17 Total: 23.07 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.98 Total: -9.97 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -3.87 Total: -95.30 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.47 Total: -34.04 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.67 Total: 45.93 kcal Total: -72.79 2.49 -70.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350932655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.864 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds