Wall clock time and date at job start Tue Mar 31 2020 15:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00294 * 2 1 4 4 H 1.09000 * 109.46682 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46972 * 240.00082 * 3 2 1 6 6 O 1.42894 * 109.47210 * 304.99969 * 5 3 2 7 7 N 1.46502 * 109.47008 * 120.00087 * 3 2 1 8 8 C 1.34781 * 119.99888 * 205.00287 * 7 3 2 9 9 O 1.21668 * 119.99616 * 359.97438 * 8 7 3 10 10 C 1.46902 * 119.99908 * 180.02562 * 8 7 3 11 11 C 1.36374 * 126.77213 * 0.02562 * 10 8 7 12 12 N 1.35474 * 109.77305 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.24565 * 12 11 10 24 24 C 1.39120 * 133.18667 * 180.39443 * 23 12 11 25 25 C 1.37765 * 119.93588 * 179.61054 * 24 23 12 26 26 C 1.38758 * 120.62864 * 359.78442 * 25 24 23 27 27 C 1.37756 * 120.30310 * 359.97385 * 26 25 24 28 28 C 1.39276 * 119.67023 * 0.02562 * 27 26 25 29 29 H 1.07993 * 120.00359 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99859 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99859 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47003 * 65.00348 * 5 3 2 33 33 H 1.09006 * 109.46589 * 185.00080 * 5 3 2 34 34 H 0.96701 * 114.00032 * 180.02562 * 6 5 3 35 35 H 0.96995 * 120.00309 * 24.99878 * 7 3 2 36 36 H 1.08000 * 125.11237 * 0.02562 * 11 10 8 37 37 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 38 38 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 39 39 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 40 40 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.03485 * 359.36813 * 24 23 12 43 43 H 1.07997 * 119.69111 * 179.75670 * 25 24 23 44 44 H 1.08007 * 119.84714 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.16533 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9432 1.3860 -1.2493 6 8 3.7919 0.2380 -1.3095 7 7 2.9058 1.3826 1.1962 8 6 3.2693 2.5838 1.6877 9 8 2.8983 3.6036 1.1377 10 6 4.1143 2.6615 2.8868 11 6 4.6070 1.6139 3.6077 12 7 5.3443 2.0780 4.6452 13 6 6.0252 1.2340 5.6301 14 6 5.1299 1.0599 6.8585 15 6 5.8307 0.1922 7.8720 16 1 6.8163 -0.1960 7.6612 17 6 5.2162 -0.1011 9.0709 18 7 4.0162 0.3719 9.3277 19 14 6.0880 -1.1703 10.3303 20 1 7.4170 -1.5720 9.8035 21 1 6.2661 -0.4053 11.5906 22 1 5.2741 -2.3832 10.5983 23 6 5.3585 3.4575 4.6467 24 6 5.9592 4.4026 5.4722 25 6 5.7957 5.7456 5.2123 26 6 5.0388 6.1690 4.1291 27 6 4.4401 5.2485 3.2972 28 6 4.5972 3.8876 3.5483 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 2.3114 1.4179 -2.1370 33 1 3.5541 2.2877 -1.2056 34 1 4.3789 0.2228 -2.0778 35 1 3.2019 0.5695 1.6345 36 1 4.4357 0.5712 3.3846 37 1 6.9619 1.7057 5.9271 38 1 6.2332 0.2583 5.1908 39 1 4.1932 0.5881 6.5615 40 1 4.9221 2.0355 7.2978 41 1 3.5837 0.1653 10.1711 42 1 6.5501 4.0838 6.3182 43 1 6.2605 6.4759 5.8580 44 1 4.9185 7.2250 3.9373 45 1 3.8511 5.5805 2.4550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356854363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:55 Heat of formation + Delta-G solvation = -15.424777 kcal Electronic energy + Delta-G solvation = -27109.285217 eV Core-core repulsion = 23285.356055 eV Total energy + Delta-G solvation = -3823.929162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20598 -39.42348 -37.28465 -36.85692 -35.17726 -34.07658 -32.85352 -32.24618 -30.42632 -29.24805 -28.82289 -27.87292 -25.21405 -23.67895 -22.60432 -22.10395 -21.56917 -20.47665 -20.17585 -19.25364 -17.61184 -17.38715 -16.64511 -16.55779 -15.97619 -15.35630 -15.22747 -15.15147 -14.88832 -14.63458 -14.34440 -13.99993 -13.81660 -13.57073 -13.31847 -13.11739 -12.89668 -12.59126 -12.46655 -12.31903 -12.11466 -11.80492 -11.40160 -11.20337 -11.18312 -11.10768 -10.70685 -10.61579 -10.33249 -10.28520 -9.93077 -9.88846 -9.54191 -9.42904 -9.21238 -9.02060 -8.56479 -7.92574 -7.31968 -6.19853 -4.26305 1.30452 1.88086 1.92874 2.34226 3.14127 3.19598 3.28315 3.30986 3.43149 3.67971 4.08253 4.29018 4.30351 4.50767 4.88774 4.91174 5.01262 5.02939 5.07211 5.16417 5.21508 5.34644 5.43127 5.46055 5.50390 5.59491 5.72886 5.78885 5.87847 5.98622 6.02971 6.04664 6.35104 6.36115 6.37481 6.39064 6.57514 6.74479 6.90300 6.98355 7.04946 7.33173 7.37665 7.39155 7.54026 7.55856 7.69705 7.78075 8.10016 8.47598 8.79678 9.39786 10.90930 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.003301 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.098595 B = 8480.978189 C =10472.638242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.158 4.158 3 C 0.180 3.820 4 H 0.102 0.898 5 C 0.067 3.933 6 O -0.567 6.567 7 N -0.721 5.721 8 C 0.600 3.400 9 O -0.555 6.555 10 C -0.256 4.256 11 C 0.126 3.874 12 N -0.450 5.450 13 C 0.101 3.899 14 C 0.011 3.989 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.887 5.887 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.092 3.908 24 C -0.112 4.112 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.073 4.073 28 C -0.061 4.061 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.377 0.623 35 H 0.401 0.599 36 H 0.171 0.829 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.023 0.977 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 2.483 -18.751 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.075 3.925 4 H 0.120 0.880 5 C -0.012 4.012 6 O -0.372 6.372 7 N -0.372 5.372 8 C 0.391 3.609 9 O -0.434 6.434 10 C -0.267 4.267 11 C -0.010 4.010 12 N -0.127 5.127 13 C -0.018 4.018 14 C -0.026 4.026 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.013 4.013 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.165 4.165 27 C -0.092 4.092 28 C -0.066 4.066 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.223 0.777 35 H 0.235 0.765 36 H 0.188 0.812 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.617 2.881 -18.194 18.492 hybrid contribution 0.748 -1.028 0.581 1.398 sum -0.869 1.853 -17.614 17.732 Atomic orbital electron populations 1.23959 0.95769 1.02266 0.99093 1.22922 0.95751 0.98139 1.00841 1.20083 0.91473 0.96828 0.84142 0.88006 1.22619 0.92895 0.88472 0.97215 1.86464 1.55741 1.44404 1.50638 1.45766 1.53463 1.08547 1.29462 1.17258 0.78528 0.82766 0.82383 1.90712 1.56707 1.34676 1.61327 1.19709 1.12563 0.92462 1.02007 1.22067 0.92585 0.98623 0.87738 1.44371 1.40509 1.04813 1.22982 1.22471 0.96869 0.92869 0.89634 1.19462 0.94778 0.98243 0.90126 1.21019 1.03073 1.31753 1.01097 0.92203 1.25006 0.94865 0.95930 0.98263 1.69981 1.13738 1.44411 1.24361 0.86463 0.79701 0.80169 0.81250 1.19598 1.20823 1.20824 1.18271 1.01769 0.83110 0.98172 1.20143 1.01999 0.91625 0.99482 1.20746 0.99853 0.94424 0.97958 1.20877 1.00275 0.98962 0.96390 1.20545 0.98758 0.90592 0.99291 1.18686 0.99957 0.92641 0.95272 0.87905 0.88361 0.86263 0.93006 0.92692 0.77658 0.76458 0.81216 0.90155 0.89853 0.95847 0.95636 0.92684 0.85852 0.86007 0.86335 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 14.32 29.02 0.42 -1.03 16 2 C -0.16 -1.48 8.52 -36.03 -0.31 -1.79 16 3 C 0.18 1.96 2.73 -69.08 -0.19 1.77 16 4 H 0.10 1.20 7.22 -51.93 -0.37 0.82 16 5 C 0.07 0.65 6.84 37.16 0.25 0.90 16 6 O -0.57 -5.20 13.01 -35.23 -0.46 -5.66 16 7 N -0.72 -9.03 5.00 -56.17 -0.28 -9.31 16 8 C 0.60 9.58 7.76 -12.75 -0.10 9.48 16 9 O -0.55 -10.18 15.82 5.22 0.08 -10.10 16 10 C -0.26 -4.32 6.27 -103.31 -0.65 -4.97 16 11 C 0.13 1.98 10.75 -16.62 -0.18 1.80 16 12 N -0.45 -7.99 2.74 -114.23 -0.31 -8.30 16 13 C 0.10 1.87 5.89 -4.05 -0.02 1.85 16 14 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 15 C -0.53 -13.84 9.11 -34.44 -0.31 -14.16 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 19 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.09 1.68 6.79 -83.97 -0.57 1.11 16 24 C -0.11 -1.91 9.97 -39.43 -0.39 -2.30 16 25 C -0.11 -1.64 10.01 -39.56 -0.40 -2.03 16 26 C -0.15 -2.15 10.03 -39.57 -0.40 -2.54 16 27 C -0.07 -1.23 9.85 -39.37 -0.39 -1.62 16 28 C -0.06 -1.12 6.27 -104.95 -0.66 -1.77 16 29 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.10 0.79 7.83 -52.48 -0.41 0.38 16 31 H 0.12 1.10 7.96 -52.48 -0.42 0.68 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.38 1.93 9.12 45.56 0.42 2.34 16 35 H 0.40 4.40 7.47 -40.82 -0.31 4.10 16 36 H 0.17 2.04 7.38 -52.49 -0.39 1.65 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 45 H 0.13 2.08 7.45 -52.48 -0.39 1.69 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -32.92 388.13 -9.18 -42.10 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.64 Total: 8.37 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -4.14 Total: -13.59 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.14 Total: -42.47 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.38 Total: -15.76 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.92 -9.18 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356854363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.672 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds