Wall clock time and date at job start Tue Mar 31 2020 15:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00294 * 2 1 4 4 H 1.09000 * 109.46682 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46972 * 240.00082 * 3 2 1 6 6 O 1.42894 * 109.47210 * 304.99969 * 5 3 2 7 7 N 1.46502 * 109.47008 * 120.00087 * 3 2 1 8 8 C 1.34781 * 119.99888 * 205.00287 * 7 3 2 9 9 O 1.21668 * 119.99616 * 359.97438 * 8 7 3 10 10 C 1.46902 * 119.99908 * 180.02562 * 8 7 3 11 11 C 1.36374 * 126.77213 * 0.02562 * 10 8 7 12 12 N 1.35474 * 109.77305 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.24565 * 12 11 10 24 24 C 1.39120 * 133.18667 * 180.39443 * 23 12 11 25 25 C 1.37765 * 119.93588 * 179.61054 * 24 23 12 26 26 C 1.38758 * 120.62864 * 359.78442 * 25 24 23 27 27 C 1.37756 * 120.30310 * 359.97385 * 26 25 24 28 28 C 1.39276 * 119.67023 * 0.02562 * 27 26 25 29 29 H 1.07993 * 120.00359 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99859 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99859 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47003 * 65.00348 * 5 3 2 33 33 H 1.09006 * 109.46589 * 185.00080 * 5 3 2 34 34 H 0.96701 * 114.00032 * 180.02562 * 6 5 3 35 35 H 0.96995 * 120.00309 * 24.99878 * 7 3 2 36 36 H 1.08000 * 125.11237 * 0.02562 * 11 10 8 37 37 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 38 38 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 39 39 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 40 40 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.03485 * 359.36813 * 24 23 12 43 43 H 1.07997 * 119.69111 * 179.75670 * 25 24 23 44 44 H 1.08007 * 119.84714 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.16533 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9432 1.3860 -1.2493 6 8 3.7919 0.2380 -1.3095 7 7 2.9058 1.3826 1.1962 8 6 3.2693 2.5838 1.6877 9 8 2.8983 3.6036 1.1377 10 6 4.1143 2.6615 2.8868 11 6 4.6070 1.6139 3.6077 12 7 5.3443 2.0780 4.6452 13 6 6.0252 1.2340 5.6301 14 6 5.1299 1.0599 6.8585 15 6 5.8307 0.1922 7.8720 16 1 6.8163 -0.1960 7.6612 17 6 5.2162 -0.1011 9.0709 18 7 4.0162 0.3719 9.3277 19 14 6.0880 -1.1703 10.3303 20 1 7.4170 -1.5720 9.8035 21 1 6.2661 -0.4053 11.5906 22 1 5.2741 -2.3832 10.5983 23 6 5.3585 3.4575 4.6467 24 6 5.9592 4.4026 5.4722 25 6 5.7957 5.7456 5.2123 26 6 5.0388 6.1690 4.1291 27 6 4.4401 5.2485 3.2972 28 6 4.5972 3.8876 3.5483 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 2.3114 1.4179 -2.1370 33 1 3.5541 2.2877 -1.2056 34 1 4.3789 0.2228 -2.0778 35 1 3.2019 0.5695 1.6345 36 1 4.4357 0.5712 3.3846 37 1 6.9619 1.7057 5.9271 38 1 6.2332 0.2583 5.1908 39 1 4.1932 0.5881 6.5615 40 1 4.9221 2.0355 7.2978 41 1 3.5837 0.1653 10.1711 42 1 6.5501 4.0838 6.3182 43 1 6.2605 6.4759 5.8580 44 1 4.9185 7.2250 3.9373 45 1 3.8511 5.5805 2.4550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356854363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:54 Heat of formation + Delta-G solvation = -36.604446 kcal Electronic energy + Delta-G solvation = -27110.203636 eV Core-core repulsion = 23285.356055 eV Total energy + Delta-G solvation = -3824.847581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.49566 -40.53625 -38.19659 -38.12962 -36.02755 -35.84098 -34.18023 -33.55312 -31.89800 -30.31414 -30.26375 -28.98007 -26.89568 -24.77407 -23.95745 -23.49771 -22.78636 -21.73149 -21.22428 -20.36964 -18.83527 -18.39407 -18.29546 -17.68098 -17.05951 -16.68399 -16.63290 -16.40529 -16.20693 -15.77306 -15.46041 -15.28349 -15.06361 -14.87238 -14.44642 -14.39189 -14.27847 -14.02648 -13.60034 -13.46337 -13.41665 -12.92406 -12.90566 -12.81755 -12.56874 -12.34757 -12.06021 -11.95629 -11.90176 -11.66409 -11.38490 -11.19379 -10.82483 -10.64561 -10.56824 -10.44464 -10.06736 -9.20903 -8.63487 -8.25283 -6.39052 0.04349 0.61865 1.04828 1.19901 1.40794 1.42065 1.54361 1.82698 2.37947 2.40848 2.45548 3.00919 3.09541 3.39106 3.68805 3.71031 3.75378 3.85725 4.09774 4.13121 4.24257 4.28966 4.32432 4.44001 4.45634 4.51279 4.62788 4.65475 4.68774 4.71668 4.81551 4.82991 5.03052 5.13873 5.35647 5.37625 5.43829 5.52830 5.64757 5.66572 5.69969 5.71117 5.80064 5.84617 6.02992 6.23701 6.27938 6.61386 6.77771 6.87987 7.29974 7.32170 8.86279 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.003301 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.098595 B = 8480.978189 C =10472.638242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.090 0.910 5 C 0.074 3.926 6 O -0.577 6.577 7 N -0.708 5.708 8 C 0.599 3.401 9 O -0.586 6.586 10 C -0.272 4.272 11 C 0.130 3.870 12 N -0.459 5.459 13 C 0.118 3.882 14 C 0.021 3.979 15 C -0.540 4.540 16 H 0.074 0.926 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.967 3.033 20 H -0.255 1.255 21 H -0.283 1.283 22 H -0.280 1.280 23 C 0.066 3.934 24 C -0.132 4.132 25 C -0.105 4.105 26 C -0.137 4.137 27 C -0.090 4.090 28 C -0.087 4.087 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.395 0.605 35 H 0.409 0.591 36 H 0.205 0.795 37 H 0.087 0.913 38 H 0.109 0.891 39 H -0.004 1.004 40 H -0.011 1.011 41 H 0.264 0.736 42 H 0.122 0.878 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 1.540 -19.347 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.185 4.185 3 C 0.069 3.931 4 H 0.108 0.892 5 C -0.005 4.005 6 O -0.385 6.385 7 N -0.358 5.358 8 C 0.389 3.611 9 O -0.468 6.468 10 C -0.282 4.282 11 C -0.004 4.004 12 N -0.137 5.137 13 C -0.002 4.002 14 C -0.017 4.017 15 C -0.579 4.579 16 H 0.092 0.908 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.179 1.179 21 H -0.209 1.209 22 H -0.206 1.206 23 C -0.038 4.038 24 C -0.152 4.152 25 C -0.124 4.124 26 C -0.156 4.156 27 C -0.109 4.109 28 C -0.091 4.091 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.244 0.756 35 H 0.245 0.755 36 H 0.222 0.778 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.014 0.986 40 H 0.007 0.993 41 H 0.073 0.927 42 H 0.140 0.860 43 H 0.172 0.828 44 H 0.170 0.830 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.659 1.909 -18.833 18.941 hybrid contribution 0.400 -0.668 0.708 1.052 sum -0.259 1.241 -18.125 18.169 Atomic orbital electron populations 1.24157 0.95525 1.03171 0.97285 1.22819 0.95977 0.97284 1.02458 1.20234 0.91512 0.97428 0.83916 0.89237 1.22468 0.92816 0.87864 0.97346 1.86412 1.56163 1.43884 1.52059 1.45699 1.52714 1.07737 1.29664 1.17219 0.78406 0.83322 0.82128 1.90684 1.58038 1.35890 1.62191 1.19930 1.13086 0.92566 1.02658 1.22583 0.91244 0.99995 0.86624 1.44311 1.41366 1.04664 1.23388 1.22146 0.95614 0.94456 0.87969 1.19251 0.94653 0.95595 0.92159 1.21496 1.03582 1.31314 1.01474 0.90770 1.25963 0.95484 0.97368 1.00668 1.70126 1.15623 1.46290 1.25072 0.85359 0.79070 0.78090 0.78287 1.17898 1.20869 1.20589 1.18593 1.02670 0.83645 0.98879 1.20385 1.02615 0.92615 0.99623 1.21145 0.99019 0.94159 0.98037 1.21263 0.98695 1.00314 0.95318 1.20714 0.99557 0.90657 0.99962 1.19063 1.00547 0.93724 0.95796 0.86210 0.88253 0.85817 0.90882 0.94643 0.75583 0.75492 0.77822 0.89417 0.87299 0.98555 0.99278 0.92732 0.86002 0.82789 0.82998 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 14.32 67.78 0.97 -1.50 16 2 C -0.17 -2.90 8.52 25.65 0.22 -2.68 16 3 C 0.17 3.69 2.73 44.25 0.12 3.81 16 4 H 0.09 2.13 7.22 -2.39 -0.02 2.11 16 5 C 0.07 1.37 6.84 71.98 0.49 1.86 16 6 O -0.58 -9.72 13.01 -148.98 -1.94 -11.66 16 7 N -0.71 -17.49 5.00 -449.85 -2.25 -19.74 16 8 C 0.60 19.43 7.76 86.51 0.67 20.10 16 9 O -0.59 -22.16 15.82 -4.25 -0.07 -22.23 16 10 C -0.27 -9.30 6.27 -19.02 -0.12 -9.42 16 11 C 0.13 4.05 10.75 83.70 0.90 4.95 16 12 N -0.46 -16.36 2.74 -515.30 -1.41 -17.77 16 13 C 0.12 4.32 5.89 86.38 0.51 4.83 16 14 C 0.02 1.03 5.30 29.85 0.16 1.19 16 15 C -0.54 -28.07 9.11 25.60 0.23 -27.84 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C 0.00 0.21 5.46 84.66 0.46 0.67 16 18 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 19 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 C 0.07 2.48 6.79 38.91 0.26 2.74 16 24 C -0.13 -4.51 9.97 22.37 0.22 -4.29 16 25 C -0.10 -2.98 10.01 22.28 0.22 -2.75 16 26 C -0.14 -3.87 10.03 22.28 0.22 -3.64 16 27 C -0.09 -3.05 9.85 22.41 0.22 -2.83 16 28 C -0.09 -3.23 6.27 -20.08 -0.13 -3.36 16 29 H 0.12 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.10 1.47 7.83 -2.91 -0.02 1.45 16 31 H 0.12 2.06 7.96 -2.91 -0.02 2.04 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.39 3.37 9.12 -74.06 -0.68 2.70 16 35 H 0.41 8.59 7.47 -92.71 -0.69 7.90 16 36 H 0.21 4.59 7.38 -2.91 -0.02 4.56 16 37 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 38 H 0.11 3.42 8.11 -2.39 -0.02 3.40 16 39 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 42 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 44 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 45 H 0.12 4.16 7.45 -2.91 -0.02 4.14 16 Total: -1.00 -72.89 388.13 1.93 -70.96 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.36 Total: 29.37 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 5.65 Total: -18.14 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -3.38 Total: -92.08 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -2.01 Total: -33.89 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -72.89 1.93 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356854363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.353 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds