Wall clock time and date at job start Tue Mar 31 2020 16:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99756 * 2 1 4 4 H 1.08993 * 109.47138 * 4.99888 * 3 2 1 5 5 C 1.53000 * 109.47125 * 125.00163 * 3 2 1 6 6 O 1.42904 * 109.47450 * 54.99810 * 5 3 2 7 7 N 1.46504 * 109.47039 * 244.99791 * 3 2 1 8 8 C 1.34777 * 120.00008 * 84.99908 * 7 3 2 9 9 O 1.21676 * 119.99997 * 359.97438 * 8 7 3 10 10 C 1.46909 * 120.00143 * 180.02562 * 8 7 3 11 11 C 1.36372 * 126.77013 * 0.02562 * 10 8 7 12 12 N 1.35475 * 109.76918 * 179.97438 * 11 10 8 13 13 C 1.46502 * 124.78462 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47216 * 265.02760 * 13 12 11 15 15 C 1.50703 * 109.46786 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00411 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99520 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99706 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47247 * 89.99936 * 19 17 15 21 21 H 1.48497 * 109.46970 * 209.99960 * 19 17 15 22 22 H 1.48494 * 109.47096 * 329.99706 * 19 17 15 23 23 C 1.37958 * 110.42631 * 0.02562 * 12 11 10 24 24 C 1.39121 * 133.18730 * 179.97438 * 23 12 11 25 25 C 1.37764 * 119.92746 * 179.91047 * 24 23 12 26 26 C 1.38755 * 120.63709 * 0.13948 * 25 24 23 27 27 C 1.37752 * 120.29992 * 359.93077 * 26 25 24 28 28 C 1.39274 * 119.67233 * 359.97438 * 27 26 25 29 29 H 1.08000 * 120.00336 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.99791 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00336 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47022 * 174.99473 * 5 3 2 33 33 H 1.09001 * 109.46893 * 294.99739 * 5 3 2 34 34 H 0.96696 * 114.00193 * 180.02562 * 6 5 3 35 35 H 0.96997 * 120.00482 * 265.00591 * 7 3 2 36 36 H 1.08004 * 125.11339 * 0.25244 * 11 10 8 37 37 H 1.09003 * 109.46837 * 25.03144 * 13 12 11 38 38 H 1.08998 * 109.47057 * 145.02572 * 13 12 11 39 39 H 1.08994 * 109.47024 * 300.00252 * 14 13 12 40 40 H 1.09000 * 109.47349 * 60.00478 * 14 13 12 41 41 H 0.97005 * 120.00307 * 180.02562 * 18 17 15 42 42 H 1.07995 * 120.03653 * 0.02625 * 24 23 12 43 43 H 1.08008 * 119.68267 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.84703 * 179.90704 * 26 25 24 45 45 H 1.08001 * 120.16191 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3585 2.1316 0.0895 5 6 3.0350 1.3332 1.1816 6 8 3.8841 0.1850 1.1275 7 7 2.8131 1.4362 -1.2518 8 6 2.2098 1.9331 -2.3498 9 8 1.0423 2.2724 -2.3015 10 6 2.9614 2.0640 -3.6053 11 6 4.2663 1.7274 -3.8144 12 7 4.6073 1.9907 -5.0988 13 6 5.9324 1.7540 -5.6771 14 6 6.7556 3.0418 -5.6098 15 6 8.1189 2.7981 -6.2041 16 1 8.3726 1.8224 -6.5915 17 6 9.0420 3.8211 -6.2542 18 7 10.2315 3.6086 -6.7733 19 14 8.6030 5.5089 -5.5848 20 1 8.9696 5.5821 -4.1476 21 1 9.3471 6.5494 -6.3390 22 1 7.1435 5.7369 -5.7355 23 6 3.5310 2.5142 -5.7850 24 6 3.3555 2.9430 -7.0968 25 6 2.1322 3.4291 -7.5032 26 6 1.0687 3.4992 -6.6148 27 6 1.2231 3.0809 -5.3114 28 6 2.4538 2.5854 -4.8876 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.6424 2.2369 1.1312 33 1 2.4721 1.3252 2.1150 34 1 4.5269 0.1369 1.8483 35 1 3.7437 1.1653 -1.2905 36 1 4.9271 1.3093 -3.0694 37 1 6.4389 0.9691 -5.1155 38 1 5.8251 1.4453 -6.7170 39 1 6.2490 3.8267 -6.1713 40 1 6.8630 3.3505 -4.5699 41 1 10.8811 4.3282 -6.8083 42 1 4.1768 2.8931 -7.7963 43 1 2.0002 3.7605 -8.5227 44 1 0.1156 3.8839 -6.9466 45 1 0.3939 3.1368 -4.6217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356854368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:00 Heat of formation + Delta-G solvation = -11.480082 kcal Electronic energy + Delta-G solvation = -27234.255632 eV Core-core repulsion = 23410.497525 eV Total energy + Delta-G solvation = -3823.758107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.30361 -39.46347 -37.46785 -36.95507 -35.09813 -34.16019 -32.86441 -32.27591 -30.65955 -29.37567 -29.08034 -28.10142 -25.39082 -23.47407 -22.70116 -22.07867 -21.54628 -20.38956 -20.08449 -19.57690 -17.71196 -17.55983 -16.90302 -16.68709 -15.96407 -15.40275 -15.33408 -15.22469 -14.87060 -14.77579 -14.31773 -14.09958 -13.89029 -13.68203 -13.37162 -13.15143 -13.11044 -12.77779 -12.58394 -12.44883 -11.99934 -11.77172 -11.49369 -11.42848 -11.33254 -11.19843 -10.74944 -10.45255 -10.43467 -10.29626 -10.01154 -9.90192 -9.50991 -9.46337 -9.33726 -9.08128 -8.74170 -8.02415 -7.42020 -6.24821 -4.26899 1.21617 1.79705 2.08250 2.26767 3.04052 3.18187 3.27333 3.31870 3.36068 3.60819 3.91800 4.20775 4.28143 4.56419 4.72831 4.79852 4.91804 4.97633 4.99069 5.08701 5.15677 5.22367 5.28187 5.40351 5.47653 5.60206 5.67985 5.78554 5.82938 5.85030 5.92799 5.95570 6.15168 6.29446 6.40371 6.50953 6.64794 6.66187 6.81101 6.86236 6.88957 6.90419 7.08345 7.24553 7.37142 7.42510 7.57138 7.65076 8.25282 8.43717 8.75656 9.35615 10.87495 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.003596 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.973768 B = 7784.250720 C = 9757.640556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.163 4.163 3 C 0.179 3.821 4 H 0.101 0.899 5 C 0.071 3.929 6 O -0.568 6.568 7 N -0.724 5.724 8 C 0.598 3.402 9 O -0.548 6.548 10 C -0.254 4.254 11 C 0.122 3.878 12 N -0.454 5.454 13 C 0.110 3.890 14 C -0.024 4.024 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.895 5.895 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.265 1.265 23 C 0.090 3.910 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.145 4.145 27 C -0.072 4.072 28 C -0.061 4.061 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.382 0.618 35 H 0.402 0.598 36 H 0.172 0.828 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.025 0.975 40 H 0.018 0.982 41 H 0.267 0.733 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.839 -5.009 12.667 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C 0.074 3.926 4 H 0.119 0.881 5 C -0.008 4.008 6 O -0.374 6.374 7 N -0.376 5.376 8 C 0.388 3.612 9 O -0.427 6.427 10 C -0.265 4.265 11 C -0.013 4.013 12 N -0.131 5.131 13 C -0.009 4.009 14 C -0.062 4.062 15 C -0.568 4.568 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.532 5.532 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.189 1.189 23 C -0.015 4.015 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.164 4.164 27 C -0.091 4.091 28 C -0.066 4.066 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.229 0.771 35 H 0.237 0.763 36 H 0.189 0.811 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.076 0.924 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.509 -4.845 11.957 20.952 hybrid contribution 0.959 0.866 0.820 1.530 sum -15.551 -3.979 12.777 20.516 Atomic orbital electron populations 1.23894 0.95946 1.01893 0.99134 1.23107 0.95807 0.98532 1.00783 1.20102 0.92820 0.96685 0.82984 0.88112 1.22460 0.92396 0.88497 0.97429 1.86487 1.51578 1.45340 1.53993 1.45815 1.15370 1.66489 1.09947 1.17254 0.85974 0.75831 0.82093 1.90719 1.16462 1.50741 1.84768 1.19764 0.94313 1.18218 0.94169 1.22094 0.95052 0.97597 0.86575 1.44373 1.10861 1.49460 1.08435 1.22240 0.77983 1.01349 0.99339 1.19929 0.95965 0.92620 0.97639 1.20845 0.95410 0.99490 1.41090 0.90581 1.24942 0.94673 0.98792 0.94385 1.69887 1.05416 1.33329 1.44578 0.86813 0.79258 0.84161 0.79366 1.20105 1.21026 1.18939 1.18291 0.86998 1.01989 0.94237 1.20160 0.98427 1.02071 0.92840 1.20767 0.92268 1.00314 0.99509 1.20893 0.98873 1.03135 0.93542 1.20561 0.95781 0.97155 0.95564 1.18694 0.93672 1.02641 0.91566 0.88328 0.88552 0.86853 0.92570 0.92120 0.77108 0.76311 0.81095 0.89265 0.89543 0.95700 0.96341 0.92359 0.85749 0.85918 0.86262 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 14.32 29.02 0.42 -1.32 16 2 C -0.16 -1.73 8.67 -36.02 -0.31 -2.04 16 3 C 0.18 1.84 2.73 -69.08 -0.19 1.65 16 4 H 0.10 1.12 7.23 -51.93 -0.38 0.74 16 5 C 0.07 0.51 6.78 37.16 0.25 0.76 16 6 O -0.57 -4.16 12.74 -35.23 -0.45 -4.61 16 7 N -0.72 -8.58 5.03 -56.17 -0.28 -8.86 16 8 C 0.60 9.21 7.75 -12.75 -0.10 9.11 16 9 O -0.55 -9.81 15.82 5.21 0.08 -9.73 16 10 C -0.25 -4.08 6.27 -103.31 -0.65 -4.73 16 11 C 0.12 1.80 10.75 -16.62 -0.18 1.63 16 12 N -0.45 -7.62 2.74 -114.22 -0.31 -7.93 16 13 C 0.11 1.95 5.89 -4.04 -0.02 1.93 16 14 C -0.02 -0.52 4.37 -27.88 -0.12 -0.64 16 15 C -0.53 -13.93 9.66 -34.44 -0.33 -14.26 16 16 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 17 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 19 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 C 0.09 1.57 6.79 -83.97 -0.57 1.00 16 24 C -0.11 -1.86 9.97 -39.43 -0.39 -2.25 16 25 C -0.11 -1.55 10.01 -39.56 -0.40 -1.94 16 26 C -0.15 -2.05 10.03 -39.57 -0.40 -2.44 16 27 C -0.07 -1.16 9.85 -39.37 -0.39 -1.55 16 28 C -0.06 -1.07 6.27 -104.95 -0.66 -1.73 16 29 H 0.10 1.03 7.84 -52.49 -0.41 0.62 16 30 H 0.10 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.11 1.22 7.86 -52.49 -0.41 0.81 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.38 1.19 9.12 45.56 0.42 1.61 16 35 H 0.40 4.12 7.26 -40.82 -0.30 3.82 16 36 H 0.17 1.88 7.38 -52.48 -0.39 1.50 16 37 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 40 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.13 2.02 7.45 -52.49 -0.39 1.63 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -33.45 384.07 -8.80 -42.25 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.59 Total: 7.13 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -4.14 Total: -14.87 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.18 Total: -42.24 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.37 Total: -14.34 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.45 -8.80 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356854368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.770 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds