Wall clock time and date at job start Tue Mar 31 2020 15:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99756 * 2 1 4 4 H 1.08993 * 109.47138 * 4.99888 * 3 2 1 5 5 C 1.53000 * 109.47125 * 125.00163 * 3 2 1 6 6 O 1.42904 * 109.47450 * 54.99810 * 5 3 2 7 7 N 1.46504 * 109.47039 * 244.99791 * 3 2 1 8 8 C 1.34777 * 120.00008 * 84.99908 * 7 3 2 9 9 O 1.21676 * 119.99997 * 359.97438 * 8 7 3 10 10 C 1.46909 * 120.00143 * 180.02562 * 8 7 3 11 11 C 1.36372 * 126.77013 * 0.02562 * 10 8 7 12 12 N 1.35475 * 109.76918 * 179.97438 * 11 10 8 13 13 C 1.46502 * 124.78462 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47216 * 265.02760 * 13 12 11 15 15 C 1.50703 * 109.46786 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00411 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99520 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99706 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47247 * 89.99936 * 19 17 15 21 21 H 1.48497 * 109.46970 * 209.99960 * 19 17 15 22 22 H 1.48494 * 109.47096 * 329.99706 * 19 17 15 23 23 C 1.37958 * 110.42631 * 0.02562 * 12 11 10 24 24 C 1.39121 * 133.18730 * 179.97438 * 23 12 11 25 25 C 1.37764 * 119.92746 * 179.91047 * 24 23 12 26 26 C 1.38755 * 120.63709 * 0.13948 * 25 24 23 27 27 C 1.37752 * 120.29992 * 359.93077 * 26 25 24 28 28 C 1.39274 * 119.67233 * 359.97438 * 27 26 25 29 29 H 1.08000 * 120.00336 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.99791 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00336 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47022 * 174.99473 * 5 3 2 33 33 H 1.09001 * 109.46893 * 294.99739 * 5 3 2 34 34 H 0.96696 * 114.00193 * 180.02562 * 6 5 3 35 35 H 0.96997 * 120.00482 * 265.00591 * 7 3 2 36 36 H 1.08004 * 125.11339 * 0.25244 * 11 10 8 37 37 H 1.09003 * 109.46837 * 25.03144 * 13 12 11 38 38 H 1.08998 * 109.47057 * 145.02572 * 13 12 11 39 39 H 1.08994 * 109.47024 * 300.00252 * 14 13 12 40 40 H 1.09000 * 109.47349 * 60.00478 * 14 13 12 41 41 H 0.97005 * 120.00307 * 180.02562 * 18 17 15 42 42 H 1.07995 * 120.03653 * 0.02625 * 24 23 12 43 43 H 1.08008 * 119.68267 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.84703 * 179.90704 * 26 25 24 45 45 H 1.08001 * 120.16191 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3585 2.1316 0.0895 5 6 3.0350 1.3332 1.1816 6 8 3.8841 0.1850 1.1275 7 7 2.8131 1.4362 -1.2518 8 6 2.2098 1.9331 -2.3498 9 8 1.0423 2.2724 -2.3015 10 6 2.9614 2.0640 -3.6053 11 6 4.2663 1.7274 -3.8144 12 7 4.6073 1.9907 -5.0988 13 6 5.9324 1.7540 -5.6771 14 6 6.7556 3.0418 -5.6098 15 6 8.1189 2.7981 -6.2041 16 1 8.3726 1.8224 -6.5915 17 6 9.0420 3.8211 -6.2542 18 7 10.2315 3.6086 -6.7733 19 14 8.6030 5.5089 -5.5848 20 1 8.9696 5.5821 -4.1476 21 1 9.3471 6.5494 -6.3390 22 1 7.1435 5.7369 -5.7355 23 6 3.5310 2.5142 -5.7850 24 6 3.3555 2.9430 -7.0968 25 6 2.1322 3.4291 -7.5032 26 6 1.0687 3.4992 -6.6148 27 6 1.2231 3.0809 -5.3114 28 6 2.4538 2.5854 -4.8876 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.6424 2.2369 1.1312 33 1 2.4721 1.3252 2.1150 34 1 4.5269 0.1369 1.8483 35 1 3.7437 1.1653 -1.2905 36 1 4.9271 1.3093 -3.0694 37 1 6.4389 0.9691 -5.1155 38 1 5.8251 1.4453 -6.7170 39 1 6.2490 3.8267 -6.1713 40 1 6.8630 3.3505 -4.5699 41 1 10.8811 4.3282 -6.8083 42 1 4.1768 2.8931 -7.7963 43 1 2.0002 3.7605 -8.5227 44 1 0.1156 3.8839 -6.9466 45 1 0.3939 3.1368 -4.6217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356854368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:59 Heat of formation + Delta-G solvation = -33.512061 kcal Electronic energy + Delta-G solvation = -27235.211010 eV Core-core repulsion = 23410.497525 eV Total energy + Delta-G solvation = -3824.713485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51210 -40.49866 -38.24030 -38.15013 -35.89250 -35.83847 -34.25386 -33.58297 -32.08571 -30.48464 -30.31731 -29.09818 -26.95663 -24.45553 -23.86796 -23.35187 -22.84369 -21.74051 -20.96847 -20.67429 -19.20525 -18.45979 -18.24963 -17.70075 -16.96854 -16.73409 -16.54492 -16.35945 -16.17110 -15.71982 -15.46822 -15.40768 -15.04348 -14.97652 -14.64733 -14.53923 -14.44196 -14.05200 -13.67239 -13.53154 -13.29860 -13.00453 -12.88072 -12.58595 -12.46675 -12.22031 -12.10955 -12.03185 -11.84088 -11.82522 -11.52471 -11.15297 -10.84051 -10.82780 -10.59579 -10.35888 -10.07757 -9.22274 -8.64459 -8.35883 -6.41176 0.03889 0.60956 1.04653 1.27408 1.30054 1.34606 1.43856 1.78631 2.29045 2.40242 2.44620 2.99842 3.00409 3.40230 3.68312 3.69667 3.80838 3.86021 4.04131 4.12257 4.23595 4.29488 4.31314 4.32690 4.46833 4.55858 4.60178 4.62077 4.66338 4.74234 4.80738 4.83238 5.05508 5.11249 5.15404 5.19317 5.46308 5.49335 5.52121 5.64239 5.69595 5.70449 5.82328 5.84884 6.12896 6.22344 6.24908 6.64264 6.66722 6.94023 7.24517 7.33839 8.79642 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.003596 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.973768 B = 7784.250720 C = 9757.640556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.090 0.910 5 C 0.079 3.921 6 O -0.583 6.583 7 N -0.710 5.710 8 C 0.596 3.404 9 O -0.581 6.581 10 C -0.270 4.270 11 C 0.131 3.869 12 N -0.461 5.461 13 C 0.124 3.876 14 C -0.016 4.016 15 C -0.529 4.529 16 H 0.050 0.950 17 C 0.019 3.981 18 N -0.941 5.941 19 Si 0.939 3.061 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.260 1.260 23 C 0.066 3.934 24 C -0.133 4.133 25 C -0.104 4.104 26 C -0.137 4.137 27 C -0.090 4.090 28 C -0.086 4.086 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.400 0.600 35 H 0.411 0.589 36 H 0.208 0.792 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.014 0.986 40 H 0.023 0.977 41 H 0.268 0.732 42 H 0.124 0.876 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.701 -4.730 13.827 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.067 3.933 4 H 0.108 0.892 5 C 0.001 3.999 6 O -0.392 6.392 7 N -0.361 5.361 8 C 0.386 3.614 9 O -0.463 6.463 10 C -0.280 4.280 11 C -0.004 4.004 12 N -0.139 5.139 13 C 0.004 3.996 14 C -0.054 4.054 15 C -0.567 4.567 16 H 0.068 0.932 17 C -0.180 4.180 18 N -0.581 5.581 19 Si 0.763 3.237 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.038 4.038 24 C -0.153 4.153 25 C -0.123 4.123 26 C -0.156 4.156 27 C -0.108 4.108 28 C -0.090 4.090 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.251 0.749 35 H 0.248 0.752 36 H 0.225 0.775 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.032 0.968 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.171 0.829 44 H 0.168 0.832 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.363 -4.588 13.161 22.265 hybrid contribution 1.168 0.708 0.432 1.433 sum -16.195 -3.880 13.593 21.497 Atomic orbital electron populations 1.24017 0.96060 1.02284 0.98732 1.23142 0.95945 0.98595 1.01164 1.20279 0.93544 0.96164 0.83292 0.89228 1.22355 0.92195 0.88863 0.96531 1.86432 1.52194 1.45249 1.55344 1.45731 1.15731 1.65029 1.09599 1.17265 0.85562 0.75871 0.82667 1.90695 1.17775 1.52461 1.85327 1.19955 0.95021 1.18765 0.94296 1.22617 0.95084 0.96364 0.86310 1.44275 1.10226 1.50293 1.09131 1.21942 0.78191 0.99468 1.00043 1.19774 0.94132 0.94548 0.96988 1.21157 0.97274 0.98250 1.40041 0.93214 1.25768 0.94593 1.02660 0.94956 1.70015 1.06716 1.34643 1.46679 0.85833 0.79055 0.79666 0.79143 1.18939 1.20913 1.18416 1.18574 0.87361 1.02926 0.94914 1.20400 0.99436 1.02859 0.92618 1.21148 0.91342 0.98923 1.00916 1.21255 1.00146 1.01614 0.92580 1.20706 0.95435 0.98091 0.96581 1.19051 0.94242 1.03321 0.92398 0.88907 0.87272 0.86860 0.91735 0.90280 0.74908 0.75245 0.77535 0.87358 0.89593 0.96805 0.95902 0.92257 0.85770 0.82860 0.83187 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 14.32 67.79 0.97 -2.44 16 2 C -0.17 -3.41 8.67 25.65 0.22 -3.19 16 3 C 0.17 3.32 2.73 44.25 0.12 3.44 16 4 H 0.09 1.95 7.23 -2.39 -0.02 1.93 16 5 C 0.08 0.97 6.78 71.98 0.49 1.46 16 6 O -0.58 -7.08 12.74 -148.98 -1.90 -8.98 16 7 N -0.71 -15.89 5.03 -449.84 -2.26 -18.15 16 8 C 0.60 18.06 7.75 86.51 0.67 18.73 16 9 O -0.58 -20.98 15.82 -4.27 -0.07 -21.05 16 10 C -0.27 -8.49 6.27 -19.02 -0.12 -8.61 16 11 C 0.13 3.63 10.75 83.70 0.90 4.53 16 12 N -0.46 -14.90 2.74 -515.28 -1.41 -16.31 16 13 C 0.12 4.21 5.89 86.38 0.51 4.72 16 14 C -0.02 -0.70 4.37 29.85 0.13 -0.57 16 15 C -0.53 -27.81 9.66 25.60 0.25 -27.56 16 16 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 17 C 0.02 1.04 5.47 84.66 0.46 1.50 16 18 N -0.94 -55.85 13.96 21.45 0.30 -55.55 16 19 Si 0.94 42.79 27.47 68.60 1.88 44.67 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.26 -11.54 6.54 99.48 0.65 -10.89 16 23 C 0.07 2.28 6.79 38.92 0.26 2.54 16 24 C -0.13 -4.18 9.97 22.37 0.22 -3.95 16 25 C -0.10 -2.75 10.01 22.28 0.22 -2.52 16 26 C -0.14 -3.61 10.03 22.28 0.22 -3.39 16 27 C -0.09 -2.84 9.85 22.40 0.22 -2.62 16 28 C -0.09 -2.96 6.27 -20.08 -0.13 -3.09 16 29 H 0.09 1.93 7.84 -2.91 -0.02 1.90 16 30 H 0.11 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.11 2.29 7.86 -2.91 -0.02 2.26 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.40 1.41 9.12 -74.06 -0.68 0.74 16 35 H 0.41 7.56 7.26 -92.71 -0.67 6.89 16 36 H 0.21 3.93 7.38 -2.91 -0.02 3.91 16 37 H 0.11 3.26 8.11 -2.39 -0.02 3.25 16 38 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 40 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 41 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 42 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 45 H 0.12 3.92 7.45 -2.91 -0.02 3.90 16 Total: -1.00 -72.92 384.07 1.78 -71.14 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.39 Total: 25.25 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.63 Total: -21.02 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -3.38 Total: -90.01 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.97 Total: -30.03 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -72.92 1.78 -71.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356854368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.629 kcal (2) G-P(sol) polarization free energy of solvation -72.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds