Wall clock time and date at job start Tue Mar 31 2020 15:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46920 * 2 1 4 4 H 1.08996 * 109.47499 * 304.99883 * 3 2 1 5 5 C 1.50704 * 109.46945 * 184.99927 * 3 2 1 6 6 H 1.08004 * 120.00030 * 239.99872 * 5 3 2 7 7 C 1.37878 * 119.99747 * 60.00378 * 5 3 2 8 8 N 1.31510 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99778 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46754 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46885 * 119.99724 * 9 7 5 12 12 H 1.48493 * 109.46921 * 239.99889 * 9 7 5 13 13 N 1.46506 * 109.47340 * 65.00259 * 3 2 1 14 14 C 1.34777 * 119.99901 * 275.00201 * 13 3 2 15 15 O 1.21553 * 119.99897 * 359.97438 * 14 13 3 16 16 C 1.47816 * 120.00200 * 180.02562 * 14 13 3 17 17 C 1.38957 * 121.11226 * 354.13540 * 16 14 13 18 18 C 1.39197 * 119.55893 * 180.02562 * 17 16 14 19 19 C 1.50701 * 119.04630 * 180.02562 * 18 17 16 20 20 N 1.31012 * 121.90987 * 359.97438 * 18 17 16 21 21 C 1.33496 * 121.87810 * 0.03016 * 20 18 17 22 22 C 1.40783 * 120.84444 * 179.97438 * 21 20 18 23 23 C 1.35893 * 119.95527 * 179.97438 * 22 21 20 24 24 C 1.39907 * 120.99558 * 359.97438 * 23 22 21 25 25 O 1.35829 * 119.71417 * 179.97438 * 24 23 22 26 26 C 1.42900 * 117.00393 * 359.97438 * 25 24 23 27 27 C 1.37748 * 120.57240 * 0.02665 * 24 23 22 28 28 C 1.39961 * 119.50057 * 359.66891 * 27 24 23 29 29 H 1.09003 * 109.46741 * 299.99770 * 1 2 3 30 30 H 1.08994 * 109.46931 * 60.00042 * 1 2 3 31 31 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47247 * 239.99975 * 2 1 3 33 33 H 1.09001 * 109.47282 * 119.99960 * 2 1 3 34 34 H 0.97005 * 119.99911 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99730 * 94.71662 * 13 3 2 36 36 H 1.08001 * 120.22193 * 0.02562 * 17 16 14 37 37 H 1.08993 * 109.47285 * 89.99381 * 19 18 17 38 38 H 1.09003 * 109.47377 * 209.99881 * 19 18 17 39 39 H 1.09007 * 109.47083 * 329.99361 * 19 18 17 40 40 H 1.07997 * 120.01962 * 0.02562 * 22 21 20 41 41 H 1.08008 * 119.49996 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47131 * 300.00250 * 26 25 24 43 43 H 1.09006 * 109.46650 * 59.99994 * 26 25 24 44 44 H 1.08999 * 109.47649 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.24940 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8813 -1.3818 10 1 6.5986 1.5473 -0.1948 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6168 -2.6102 13 7 1.6525 2.0975 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3410 2.6325 0.4321 16 6 0.0443 3.3257 2.6299 17 6 0.8630 3.2729 3.7514 18 6 0.4628 3.9069 4.9242 19 6 1.3599 3.8427 6.1334 20 7 -0.6706 4.5586 5.0071 21 6 -1.5077 4.6518 3.9713 22 6 -2.7206 5.3574 4.0847 23 6 -3.5591 5.4412 3.0185 24 6 -3.2372 4.8350 1.7994 25 8 -4.0947 4.9348 0.7507 26 6 -5.3005 5.6706 0.9664 27 6 -2.0587 4.1369 1.6536 28 6 -1.1756 4.0418 2.7354 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0617 -2.9495 35 1 2.2705 2.1196 1.9992 36 1 1.8035 2.7434 3.7134 37 1 2.0481 4.6878 6.1206 38 1 0.7535 3.8816 7.0383 39 1 1.9272 2.9120 6.1160 40 1 -2.9842 5.8324 5.0181 41 1 -4.4876 5.9847 3.1135 42 1 -5.8722 5.2042 1.7688 43 1 -5.0558 6.6961 1.2432 44 1 -5.8932 5.6732 0.0516 45 1 -1.8156 3.6706 0.7103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358041112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:32 Heat of formation + Delta-G solvation = -20.339367 kcal Electronic energy + Delta-G solvation = -27880.791402 eV Core-core repulsion = 24056.649128 eV Total energy + Delta-G solvation = -3824.142274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10769 -39.45446 -38.76385 -36.32191 -35.22565 -33.38568 -32.47005 -31.61162 -31.09572 -30.01005 -27.94903 -27.01604 -26.84094 -24.48306 -23.29257 -22.51041 -22.40988 -20.30220 -19.57483 -18.52173 -17.85063 -17.53094 -16.39052 -15.98255 -15.84464 -15.58358 -15.28724 -14.89480 -14.63799 -14.41544 -14.29580 -13.94327 -13.57133 -13.22747 -13.05435 -12.94951 -12.74710 -12.65332 -12.27593 -12.14677 -11.93472 -11.80648 -11.57479 -11.29637 -11.15716 -10.97705 -10.88807 -10.61996 -10.35752 -10.26038 -10.21470 -9.94074 -9.63949 -9.10051 -8.84791 -8.66463 -8.55159 -7.98955 -7.72084 -6.16643 -4.26462 0.18504 0.80478 1.80143 2.79331 3.20508 3.21401 3.29532 3.31683 3.55595 3.80170 4.10677 4.18894 4.31669 4.55414 4.63861 4.76849 4.90785 4.97738 4.97895 5.04968 5.05695 5.15287 5.29953 5.44413 5.50351 5.53258 5.61672 5.71439 5.83938 6.03519 6.05320 6.10619 6.32953 6.36811 6.42928 6.59400 6.66146 6.70264 7.00317 7.15138 7.26580 7.33202 7.40871 7.56326 7.66222 7.83957 7.89930 8.12442 8.52054 8.70284 8.97607 9.40693 10.88662 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013041 B = 0.003564 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.545011 B = 7854.917091 C = 9383.202927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.693 5.693 14 C 0.544 3.456 15 O -0.530 6.530 16 C -0.063 4.063 17 C -0.132 4.132 18 C 0.142 3.858 19 C -0.104 4.104 20 N -0.461 5.461 21 C 0.100 3.900 22 C -0.064 4.064 23 C -0.171 4.171 24 C 0.115 3.885 25 O -0.310 6.310 26 C 0.026 3.974 27 C -0.134 4.134 28 C -0.037 4.037 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.389 0.611 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 8.609 13.301 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.340 5.340 14 C 0.329 3.671 15 O -0.409 6.409 16 C -0.074 4.074 17 C -0.153 4.153 18 C -0.010 4.010 19 C -0.161 4.161 20 N -0.171 5.171 21 C -0.022 4.022 22 C -0.082 4.082 23 C -0.191 4.191 24 C 0.069 3.931 25 O -0.223 6.223 26 C -0.069 4.069 27 C -0.153 4.153 28 C -0.040 4.040 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.161 0.839 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.806 8.828 12.950 19.621 hybrid contribution 1.310 -0.252 -0.313 1.370 sum -10.496 8.576 12.637 18.531 Atomic orbital electron populations 1.21855 0.98264 0.98233 1.01261 1.21945 0.92668 0.99564 1.02457 1.18900 0.94467 0.89280 0.80549 0.92899 1.21238 0.90503 1.39233 1.06452 0.91965 1.24876 0.98664 0.94712 0.95326 1.69898 1.35094 1.37440 1.09329 0.86395 0.84765 0.77799 0.78172 1.19712 1.20842 1.20858 1.46492 1.13990 1.54809 1.18737 1.17913 0.83307 0.79629 0.86278 1.90573 1.50752 1.59789 1.39818 1.20692 0.94095 0.97347 0.95266 1.22297 1.00369 0.99890 0.92739 1.21288 0.92116 0.92749 0.94896 1.20757 0.97805 1.03134 0.94394 1.67512 1.03360 1.15954 1.30264 1.18738 0.95282 0.99273 0.88943 1.20505 0.91566 0.97364 0.98785 1.21101 1.01549 1.03383 0.93050 1.19103 0.91057 0.96388 0.86505 1.86142 1.30326 1.70764 1.35062 1.23067 0.85098 0.95397 1.03372 1.21552 0.91212 1.00367 1.02163 1.18336 0.94095 0.97391 0.94132 0.94375 0.92973 0.95725 0.88086 0.94940 0.92540 0.77763 0.83851 0.90159 0.90409 0.90318 0.84446 0.84858 0.92750 0.92754 0.88213 0.80144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.12 11.29 55.43 0.63 -23.49 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.69 -13.99 4.98 -55.89 -0.28 -14.27 16 14 C 0.54 10.86 6.31 -12.34 -0.08 10.78 16 15 O -0.53 -11.94 10.66 5.32 0.06 -11.89 16 16 C -0.06 -1.07 5.94 -104.33 -0.62 -1.69 16 17 C -0.13 -1.84 9.20 -38.96 -0.36 -2.20 16 18 C 0.14 1.85 6.78 -82.59 -0.56 1.29 16 19 C -0.10 -0.93 10.14 36.01 0.37 -0.57 16 20 N -0.46 -6.71 10.18 -7.24 -0.07 -6.78 16 21 C 0.10 1.52 6.61 -84.83 -0.56 0.96 16 22 C -0.06 -0.79 9.96 -39.46 -0.39 -1.19 16 23 C -0.17 -2.00 8.94 -39.80 -0.36 -2.36 16 24 C 0.11 1.67 6.68 -39.14 -0.26 1.41 16 25 O -0.31 -4.24 10.48 -19.20 -0.20 -4.44 16 26 C 0.03 0.21 9.80 101.05 0.99 1.21 16 27 C -0.13 -2.32 9.21 -39.12 -0.36 -2.68 16 28 C -0.04 -0.62 5.76 -106.52 -0.61 -1.24 16 29 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 30 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.39 6.75 6.71 -40.82 -0.27 6.47 16 36 H 0.14 1.65 6.55 -52.49 -0.34 1.31 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 40 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.13 1.10 6.23 -52.48 -0.33 0.77 16 42 H 0.05 0.37 7.64 -51.93 -0.40 -0.02 16 43 H 0.05 0.37 7.64 -51.93 -0.40 -0.02 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.18 3.57 4.98 -52.49 -0.26 3.31 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -30.88 363.66 -8.50 -39.38 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.90 Total: 8.99 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.18 Total: -8.12 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.27 Total: -44.54 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.14 Total: -16.33 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.88 -8.50 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358041112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.036 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds