Wall clock time and date at job start Tue Mar 31 2020 15:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46920 * 2 1 4 4 H 1.08996 * 109.47499 * 304.99883 * 3 2 1 5 5 C 1.50704 * 109.46945 * 184.99927 * 3 2 1 6 6 H 1.08004 * 120.00030 * 239.99872 * 5 3 2 7 7 C 1.37878 * 119.99747 * 60.00378 * 5 3 2 8 8 N 1.31510 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99778 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46754 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46885 * 119.99724 * 9 7 5 12 12 H 1.48493 * 109.46921 * 239.99889 * 9 7 5 13 13 N 1.46506 * 109.47340 * 65.00259 * 3 2 1 14 14 C 1.34777 * 119.99901 * 275.00201 * 13 3 2 15 15 O 1.21553 * 119.99897 * 359.97438 * 14 13 3 16 16 C 1.47816 * 120.00200 * 180.02562 * 14 13 3 17 17 C 1.38957 * 121.11226 * 354.13540 * 16 14 13 18 18 C 1.39197 * 119.55893 * 180.02562 * 17 16 14 19 19 C 1.50701 * 119.04630 * 180.02562 * 18 17 16 20 20 N 1.31012 * 121.90987 * 359.97438 * 18 17 16 21 21 C 1.33496 * 121.87810 * 0.03016 * 20 18 17 22 22 C 1.40783 * 120.84444 * 179.97438 * 21 20 18 23 23 C 1.35893 * 119.95527 * 179.97438 * 22 21 20 24 24 C 1.39907 * 120.99558 * 359.97438 * 23 22 21 25 25 O 1.35829 * 119.71417 * 179.97438 * 24 23 22 26 26 C 1.42900 * 117.00393 * 359.97438 * 25 24 23 27 27 C 1.37748 * 120.57240 * 0.02665 * 24 23 22 28 28 C 1.39961 * 119.50057 * 359.66891 * 27 24 23 29 29 H 1.09003 * 109.46741 * 299.99770 * 1 2 3 30 30 H 1.08994 * 109.46931 * 60.00042 * 1 2 3 31 31 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47247 * 239.99975 * 2 1 3 33 33 H 1.09001 * 109.47282 * 119.99960 * 2 1 3 34 34 H 0.97005 * 119.99911 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99730 * 94.71662 * 13 3 2 36 36 H 1.08001 * 120.22193 * 0.02562 * 17 16 14 37 37 H 1.08993 * 109.47285 * 89.99381 * 19 18 17 38 38 H 1.09003 * 109.47377 * 209.99881 * 19 18 17 39 39 H 1.09007 * 109.47083 * 329.99361 * 19 18 17 40 40 H 1.07997 * 120.01962 * 0.02562 * 22 21 20 41 41 H 1.08008 * 119.49996 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47131 * 300.00250 * 26 25 24 43 43 H 1.09006 * 109.46650 * 59.99994 * 26 25 24 44 44 H 1.08999 * 109.47649 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.24940 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8813 -1.3818 10 1 6.5986 1.5473 -0.1948 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6168 -2.6102 13 7 1.6525 2.0975 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3410 2.6325 0.4321 16 6 0.0443 3.3257 2.6299 17 6 0.8630 3.2729 3.7514 18 6 0.4628 3.9069 4.9242 19 6 1.3599 3.8427 6.1334 20 7 -0.6706 4.5586 5.0071 21 6 -1.5077 4.6518 3.9713 22 6 -2.7206 5.3574 4.0847 23 6 -3.5591 5.4412 3.0185 24 6 -3.2372 4.8350 1.7994 25 8 -4.0947 4.9348 0.7507 26 6 -5.3005 5.6706 0.9664 27 6 -2.0587 4.1369 1.6536 28 6 -1.1756 4.0418 2.7354 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0617 -2.9495 35 1 2.2705 2.1196 1.9992 36 1 1.8035 2.7434 3.7134 37 1 2.0481 4.6878 6.1206 38 1 0.7535 3.8816 7.0383 39 1 1.9272 2.9120 6.1160 40 1 -2.9842 5.8324 5.0181 41 1 -4.4876 5.9847 3.1135 42 1 -5.8722 5.2042 1.7688 43 1 -5.0558 6.6961 1.2432 44 1 -5.8932 5.6732 0.0516 45 1 -1.8156 3.6706 0.7103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358041112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:30 Heat of formation + Delta-G solvation = -40.058890 kcal Electronic energy + Delta-G solvation = -27881.646505 eV Core-core repulsion = 24056.649128 eV Total energy + Delta-G solvation = -3824.997377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.26017 -40.69540 -40.09896 -37.40213 -36.97601 -34.72945 -34.23057 -32.82500 -32.54894 -31.21087 -29.10895 -28.60318 -27.69261 -25.84931 -24.93027 -23.81599 -23.52201 -21.89869 -21.32621 -19.52682 -19.22911 -18.76351 -17.91536 -17.38751 -16.95251 -16.80215 -16.70903 -16.36682 -16.16267 -15.62574 -15.51310 -15.31370 -14.64278 -14.50878 -14.44096 -14.13335 -13.96064 -13.77398 -13.60204 -13.50625 -13.19417 -12.96839 -12.86549 -12.75716 -12.73281 -12.71070 -12.19201 -12.09618 -12.04680 -11.66610 -11.56580 -11.36462 -11.24834 -11.05534 -10.56267 -10.25637 -9.79797 -9.66533 -8.86418 -8.16603 -6.34117 -0.96463 -0.26817 0.63641 1.44901 1.46364 1.57859 1.69742 2.13537 2.24582 2.30835 2.48410 3.02253 3.13477 3.15415 3.50245 3.63394 3.65602 3.79153 3.95456 4.08874 4.32329 4.40710 4.40932 4.46405 4.47585 4.53818 4.58820 4.72092 4.72768 4.84405 4.86441 4.89652 5.00449 5.03644 5.12154 5.17634 5.23313 5.26379 5.40350 5.46374 5.57129 5.62373 5.64575 5.76283 5.88629 6.14242 6.37475 6.72146 6.80900 6.84852 7.29736 7.45445 8.89052 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013041 B = 0.003564 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.545011 B = 7854.917091 C = 9383.202927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.286 1.286 13 N -0.690 5.690 14 C 0.543 3.457 15 O -0.564 6.564 16 C -0.096 4.096 17 C -0.113 4.113 18 C 0.136 3.864 19 C -0.100 4.100 20 N -0.460 5.460 21 C 0.081 3.919 22 C -0.053 4.053 23 C -0.162 4.162 24 C 0.125 3.875 25 O -0.337 6.337 26 C 0.013 3.987 27 C -0.183 4.183 28 C -0.050 4.050 29 H 0.038 0.962 30 H 0.027 0.973 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.404 0.596 36 H 0.167 0.833 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.171 0.829 41 H 0.177 0.823 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 9.887 16.718 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.212 1.212 13 N -0.339 5.339 14 C 0.330 3.670 15 O -0.445 6.445 16 C -0.107 4.107 17 C -0.134 4.134 18 C -0.016 4.016 19 C -0.157 4.157 20 N -0.170 5.170 21 C -0.041 4.041 22 C -0.071 4.071 23 C -0.182 4.182 24 C 0.080 3.920 25 O -0.251 6.251 26 C -0.081 4.081 27 C -0.202 4.202 28 C -0.053 4.053 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.185 0.815 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.188 0.812 41 H 0.194 0.806 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.134 0.866 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.808 10.122 16.403 22.604 hybrid contribution 1.154 -0.562 -1.376 1.882 sum -10.654 9.561 15.026 20.753 Atomic orbital electron populations 1.21688 0.97226 0.99166 1.00098 1.21789 0.93477 0.99000 1.01606 1.18468 0.93982 0.89192 0.80791 0.98071 1.21578 0.91078 1.39052 1.06877 0.90766 1.25758 1.03311 0.94311 0.94965 1.70053 1.37032 1.38258 1.09882 0.85318 0.79091 0.77834 0.78230 1.18243 1.20416 1.21224 1.46187 1.14705 1.55092 1.17918 1.18393 0.82533 0.78918 0.87162 1.90581 1.51668 1.60771 1.41505 1.20437 0.95829 0.99712 0.94756 1.22625 1.00281 0.98583 0.91902 1.21947 0.92199 0.91695 0.95800 1.20887 0.97454 1.04859 0.92496 1.67626 1.03730 1.15932 1.29696 1.19089 0.96697 0.99969 0.88335 1.20930 0.90148 0.95883 1.00135 1.21433 1.02909 1.02641 0.91223 1.19245 0.90069 0.94986 0.87746 1.86121 1.31931 1.71519 1.35550 1.23472 0.83376 0.96026 1.05223 1.21277 0.93806 1.03738 1.01417 1.18466 0.93998 0.97899 0.94911 0.94265 0.95425 0.93532 0.90672 0.93752 0.92581 0.75998 0.81528 0.88647 0.89592 0.88279 0.81152 0.80587 0.90770 0.90805 0.86628 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.51 71.98 0.61 -5.13 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.28 14.25 2.24 44.24 0.10 14.35 16 4 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 5 C -0.55 -28.53 8.73 25.60 0.22 -28.31 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -51.88 11.29 21.45 0.24 -51.64 16 9 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.69 -28.89 4.98 -449.00 -2.23 -31.13 16 14 C 0.54 23.02 6.31 86.78 0.55 23.57 16 15 O -0.56 -27.85 10.66 -3.88 -0.04 -27.89 16 16 C -0.10 -3.39 5.94 -19.68 -0.12 -3.51 16 17 C -0.11 -3.03 9.20 22.67 0.21 -2.82 16 18 C 0.14 3.24 6.78 42.91 0.29 3.53 16 19 C -0.10 -1.43 10.14 71.24 0.72 -0.71 16 20 N -0.46 -12.38 10.18 -176.81 -1.80 -14.18 16 21 C 0.08 2.37 6.61 40.39 0.27 2.64 16 22 C -0.05 -1.17 9.96 22.35 0.22 -0.95 16 23 C -0.16 -3.40 8.94 22.13 0.20 -3.21 16 24 C 0.13 3.68 6.68 22.56 0.15 3.83 16 25 O -0.34 -9.29 10.48 -91.63 -0.96 -10.25 16 26 C 0.01 0.19 9.80 113.37 1.11 1.30 16 27 C -0.18 -6.79 9.21 22.57 0.21 -6.58 16 28 C -0.05 -1.75 5.76 -21.10 -0.12 -1.87 16 29 H 0.04 1.77 5.65 -2.39 -0.01 1.76 16 30 H 0.03 1.36 7.84 -2.39 -0.02 1.35 16 31 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.07 4.13 5.95 -2.39 -0.01 4.11 16 33 H 0.04 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 35 H 0.40 14.02 6.71 -92.71 -0.62 13.39 16 36 H 0.17 3.50 6.55 -2.91 -0.02 3.48 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.04 8.07 -2.38 -0.02 1.02 16 40 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.18 2.10 6.23 -2.91 -0.02 2.08 16 42 H 0.07 0.79 7.64 -2.39 -0.02 0.77 16 43 H 0.07 0.79 7.64 -2.38 -0.02 0.77 16 44 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.14 6.36 4.98 -2.92 -0.01 6.34 16 Total: -1.00 -72.78 363.66 2.88 -69.89 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.41 Total: 29.93 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 5.24 Total: -8.28 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.79 Total: -96.95 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.00 Total: -38.14 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -72.78 2.88 -69.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358041112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.835 kcal (2) G-P(sol) polarization free energy of solvation -72.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds