Wall clock time and date at job start Tue Mar 31 2020 15:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47072 * 2 1 4 4 H 1.09000 * 109.46761 * 55.00327 * 3 2 1 5 5 C 1.50703 * 109.47109 * 174.99731 * 3 2 1 6 6 H 1.08003 * 119.99509 * 120.00059 * 5 3 2 7 7 C 1.37870 * 120.00336 * 300.00643 * 5 3 2 8 8 N 1.31521 * 119.99891 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00123 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46855 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47065 * 119.99995 * 9 7 5 12 12 H 1.48504 * 109.47106 * 239.99748 * 9 7 5 13 13 N 1.46494 * 109.47514 * 295.00041 * 3 2 1 14 14 C 1.34780 * 119.99792 * 84.99907 * 13 3 2 15 15 O 1.21559 * 119.99884 * 0.02562 * 14 13 3 16 16 C 1.47820 * 120.00093 * 180.02562 * 14 13 3 17 17 C 1.38952 * 121.11409 * 354.14433 * 16 14 13 18 18 C 1.39199 * 119.56020 * 179.97438 * 17 16 14 19 19 C 1.50700 * 119.04493 * 179.97438 * 18 17 16 20 20 N 1.31007 * 121.90907 * 359.97375 * 18 17 16 21 21 C 1.33494 * 121.87946 * 0.02597 * 20 18 17 22 22 C 1.40782 * 120.84784 * 179.97438 * 21 20 18 23 23 C 1.35895 * 119.96211 * 180.02562 * 22 21 20 24 24 C 1.39908 * 120.98961 * 359.97438 * 23 22 21 25 25 O 1.35835 * 119.71127 * 180.02562 * 24 23 22 26 26 C 1.42896 * 117.00228 * 0.02562 * 25 24 23 27 27 C 1.37750 * 120.57037 * 0.02739 * 24 23 22 28 28 C 1.39956 * 119.50734 * 359.69777 * 27 24 23 29 29 H 1.09000 * 109.47033 * 300.00061 * 1 2 3 30 30 H 1.09001 * 109.47522 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47285 * 59.99462 * 1 2 3 32 32 H 1.08994 * 109.46977 * 120.00543 * 2 1 3 33 33 H 1.09000 * 109.46830 * 240.00698 * 2 1 3 34 34 H 0.97001 * 119.99695 * 180.02562 * 8 7 5 35 35 H 0.96993 * 120.00334 * 265.00029 * 13 3 2 36 36 H 1.07997 * 120.21806 * 359.97438 * 17 16 14 37 37 H 1.09005 * 109.47327 * 89.99631 * 19 18 17 38 38 H 1.08993 * 109.47191 * 209.99680 * 19 18 17 39 39 H 1.08993 * 109.47185 * 330.00068 * 19 18 17 40 40 H 1.08004 * 120.01965 * 0.03620 * 22 21 20 41 41 H 1.08000 * 119.50526 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47296 * 179.97438 * 26 25 24 43 43 H 1.08996 * 109.47277 * 300.00166 * 26 25 24 44 44 H 1.09008 * 109.46982 * 59.99722 * 26 25 24 45 45 H 1.08008 * 120.24528 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3364 2.1728 9 14 6.0050 0.8800 1.3811 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6092 12 1 6.4962 -0.5191 1.4626 13 7 1.6525 2.0976 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3410 2.6326 -0.4318 16 6 0.0438 3.3250 -2.6300 17 6 0.9521 3.4813 -3.6699 18 6 0.5488 4.1078 -4.8457 19 6 1.5435 4.2717 -5.9658 20 7 -0.6705 4.5590 -5.0067 21 6 -1.5966 4.4444 -4.0521 22 6 -2.9005 4.9377 -4.2482 23 6 -3.8290 4.8119 -3.2640 24 6 -3.5115 4.1956 -2.0487 25 8 -4.4599 4.0833 -1.0828 26 6 -5.7530 4.6147 -1.3783 27 6 -2.2454 3.7018 -1.8233 28 6 -1.2734 3.8143 -2.8239 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.8293 -0.0614 2.9497 35 1 2.2719 2.1233 -1.9977 36 1 1.9643 3.1192 -3.5665 37 1 1.4982 3.4026 -6.6221 38 1 1.3047 5.1698 -6.5352 39 1 2.5472 4.3611 -5.5502 40 1 -3.1628 5.4157 -5.1805 41 1 -4.8269 5.1933 -3.4222 42 1 -6.4134 4.4593 -0.5252 43 1 -5.6690 5.6819 -1.5836 44 1 -6.1632 4.1079 -2.2520 45 1 -2.0059 3.2274 -0.8830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358041113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:39 Heat of formation + Delta-G solvation = -20.357095 kcal Electronic energy + Delta-G solvation = -27899.476534 eV Core-core repulsion = 24075.333491 eV Total energy + Delta-G solvation = -3824.143043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10868 -39.45432 -38.76413 -36.32209 -35.22361 -33.38504 -32.46977 -31.61160 -31.10631 -30.00076 -27.94606 -27.01917 -26.84255 -24.48247 -23.29547 -22.50684 -22.40922 -20.30943 -19.56969 -18.52365 -17.85267 -17.53004 -16.39577 -15.98874 -15.84494 -15.57476 -15.21988 -14.96764 -14.63322 -14.40748 -14.31243 -13.91864 -13.58116 -13.21022 -13.06670 -12.97518 -12.73887 -12.67234 -12.27333 -12.10469 -11.93426 -11.81459 -11.57169 -11.29608 -11.15407 -10.98434 -10.89432 -10.62086 -10.36405 -10.27976 -10.19372 -9.93563 -9.64004 -9.09918 -8.84392 -8.66517 -8.54869 -7.99382 -7.72194 -6.16688 -4.26556 0.18480 0.80433 1.80082 2.79288 3.20386 3.21313 3.29433 3.31556 3.55592 3.80089 4.10669 4.18793 4.31593 4.55512 4.63781 4.76902 4.90778 4.97590 4.97926 5.05023 5.05710 5.15208 5.29842 5.44733 5.50317 5.53222 5.61713 5.71517 5.84097 6.03549 6.05279 6.10636 6.32897 6.36974 6.43102 6.59455 6.66137 6.70218 7.00621 7.15179 7.26639 7.33298 7.40770 7.56395 7.66171 7.83863 7.89947 8.12500 8.52054 8.70162 8.97603 9.40599 10.88618 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.003581 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.724972 B = 7817.545350 C = 9491.110624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.693 5.693 14 C 0.544 3.456 15 O -0.530 6.530 16 C -0.063 4.063 17 C -0.132 4.132 18 C 0.142 3.858 19 C -0.104 4.104 20 N -0.461 5.461 21 C 0.100 3.900 22 C -0.063 4.063 23 C -0.171 4.171 24 C 0.115 3.885 25 O -0.310 6.310 26 C 0.026 3.974 27 C -0.134 4.134 28 C -0.037 4.037 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.037 0.963 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.389 0.611 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.099 0.901 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 7.816 -13.613 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.340 5.340 14 C 0.329 3.671 15 O -0.409 6.409 16 C -0.074 4.074 17 C -0.153 4.153 18 C -0.010 4.010 19 C -0.161 4.161 20 N -0.171 5.171 21 C -0.022 4.022 22 C -0.082 4.082 23 C -0.191 4.191 24 C 0.069 3.931 25 O -0.223 6.223 26 C -0.069 4.069 27 C -0.153 4.153 28 C -0.040 4.040 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.162 0.838 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.118 0.882 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.153 8.005 -13.273 19.696 hybrid contribution 1.292 -0.291 0.297 1.357 sum -10.861 7.714 -12.976 18.597 Atomic orbital electron populations 1.21855 0.98267 0.98246 1.01245 1.21943 0.92673 0.99566 1.02450 1.18899 0.94465 0.89295 0.80544 0.92900 1.21234 0.90496 1.39236 1.06448 0.91969 1.24878 0.98670 0.94709 0.95337 1.69903 1.35093 1.37447 1.09316 0.86394 0.84753 0.77802 0.78166 1.19710 1.20854 1.20850 1.46489 1.13919 1.54793 1.18828 1.17917 0.83300 0.79636 0.86275 1.90575 1.50574 1.60030 1.39756 1.20692 0.93229 0.98060 0.95436 1.22301 1.00725 0.99088 0.93168 1.21289 0.91800 0.93552 0.94403 1.20757 0.96245 1.03468 0.95629 1.67509 1.01340 1.17420 1.30822 1.18738 0.94161 0.99419 0.89924 1.20506 0.90323 0.98273 0.99113 1.21102 1.00836 1.03360 0.93792 1.19105 0.89600 0.96642 0.87705 1.86143 1.20170 1.76664 1.39317 1.23065 0.82711 0.98388 1.02770 1.21553 0.89235 1.02006 1.02512 1.18334 0.93166 0.98013 0.94438 0.92968 0.95718 0.94383 0.88087 0.94946 0.92542 0.77762 0.83830 0.90181 0.90403 0.90291 0.84448 0.84859 0.88214 0.92746 0.92761 0.80140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.49 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 13 N -0.69 -13.99 4.98 -55.89 -0.28 -14.27 16 14 C 0.54 10.86 6.31 -12.34 -0.08 10.78 16 15 O -0.53 -11.95 10.66 5.31 0.06 -11.89 16 16 C -0.06 -1.07 5.94 -104.33 -0.62 -1.69 16 17 C -0.13 -1.84 9.20 -38.96 -0.36 -2.20 16 18 C 0.14 1.86 6.78 -82.59 -0.56 1.30 16 19 C -0.10 -0.94 10.14 36.01 0.37 -0.57 16 20 N -0.46 -6.71 10.18 -7.24 -0.07 -6.78 16 21 C 0.10 1.52 6.61 -84.83 -0.56 0.95 16 22 C -0.06 -0.79 9.96 -39.46 -0.39 -1.19 16 23 C -0.17 -2.00 8.94 -39.80 -0.36 -2.36 16 24 C 0.11 1.67 6.68 -39.13 -0.26 1.41 16 25 O -0.31 -4.23 10.48 -19.22 -0.20 -4.43 16 26 C 0.03 0.21 9.80 101.05 0.99 1.20 16 27 C -0.13 -2.32 9.21 -39.12 -0.36 -2.68 16 28 C -0.04 -0.62 5.76 -106.52 -0.61 -1.24 16 29 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 32 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.39 6.75 6.71 -40.82 -0.27 6.47 16 36 H 0.14 1.66 6.55 -52.49 -0.34 1.32 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.13 1.10 6.23 -52.49 -0.33 0.77 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.37 7.64 -51.93 -0.40 -0.02 16 44 H 0.05 0.37 7.64 -51.92 -0.40 -0.03 16 45 H 0.18 3.57 4.98 -52.48 -0.26 3.31 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -30.86 363.65 -8.50 -39.36 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.90 Total: 9.01 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.18 Total: -8.12 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.27 Total: -44.54 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.14 Total: -16.33 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.86 -8.50 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358041113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.000 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds