Wall clock time and date at job start Tue Mar 31 2020 15:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47072 * 2 1 4 4 H 1.09000 * 109.46761 * 55.00327 * 3 2 1 5 5 C 1.50703 * 109.47109 * 174.99731 * 3 2 1 6 6 H 1.08003 * 119.99509 * 120.00059 * 5 3 2 7 7 C 1.37870 * 120.00336 * 300.00643 * 5 3 2 8 8 N 1.31521 * 119.99891 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00123 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46855 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47065 * 119.99995 * 9 7 5 12 12 H 1.48504 * 109.47106 * 239.99748 * 9 7 5 13 13 N 1.46494 * 109.47514 * 295.00041 * 3 2 1 14 14 C 1.34780 * 119.99792 * 84.99907 * 13 3 2 15 15 O 1.21559 * 119.99884 * 0.02562 * 14 13 3 16 16 C 1.47820 * 120.00093 * 180.02562 * 14 13 3 17 17 C 1.38952 * 121.11409 * 354.14433 * 16 14 13 18 18 C 1.39199 * 119.56020 * 179.97438 * 17 16 14 19 19 C 1.50700 * 119.04493 * 179.97438 * 18 17 16 20 20 N 1.31007 * 121.90907 * 359.97375 * 18 17 16 21 21 C 1.33494 * 121.87946 * 0.02597 * 20 18 17 22 22 C 1.40782 * 120.84784 * 179.97438 * 21 20 18 23 23 C 1.35895 * 119.96211 * 180.02562 * 22 21 20 24 24 C 1.39908 * 120.98961 * 359.97438 * 23 22 21 25 25 O 1.35835 * 119.71127 * 180.02562 * 24 23 22 26 26 C 1.42896 * 117.00228 * 0.02562 * 25 24 23 27 27 C 1.37750 * 120.57037 * 0.02739 * 24 23 22 28 28 C 1.39956 * 119.50734 * 359.69777 * 27 24 23 29 29 H 1.09000 * 109.47033 * 300.00061 * 1 2 3 30 30 H 1.09001 * 109.47522 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47285 * 59.99462 * 1 2 3 32 32 H 1.08994 * 109.46977 * 120.00543 * 2 1 3 33 33 H 1.09000 * 109.46830 * 240.00698 * 2 1 3 34 34 H 0.97001 * 119.99695 * 180.02562 * 8 7 5 35 35 H 0.96993 * 120.00334 * 265.00029 * 13 3 2 36 36 H 1.07997 * 120.21806 * 359.97438 * 17 16 14 37 37 H 1.09005 * 109.47327 * 89.99631 * 19 18 17 38 38 H 1.08993 * 109.47191 * 209.99680 * 19 18 17 39 39 H 1.08993 * 109.47185 * 330.00068 * 19 18 17 40 40 H 1.08004 * 120.01965 * 0.03620 * 22 21 20 41 41 H 1.08000 * 119.50526 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47296 * 179.97438 * 26 25 24 43 43 H 1.08996 * 109.47277 * 300.00166 * 26 25 24 44 44 H 1.09008 * 109.46982 * 59.99722 * 26 25 24 45 45 H 1.08008 * 120.24528 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3364 2.1728 9 14 6.0050 0.8800 1.3811 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6092 12 1 6.4962 -0.5191 1.4626 13 7 1.6525 2.0976 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3410 2.6326 -0.4318 16 6 0.0438 3.3250 -2.6300 17 6 0.9521 3.4813 -3.6699 18 6 0.5488 4.1078 -4.8457 19 6 1.5435 4.2717 -5.9658 20 7 -0.6705 4.5590 -5.0067 21 6 -1.5966 4.4444 -4.0521 22 6 -2.9005 4.9377 -4.2482 23 6 -3.8290 4.8119 -3.2640 24 6 -3.5115 4.1956 -2.0487 25 8 -4.4599 4.0833 -1.0828 26 6 -5.7530 4.6147 -1.3783 27 6 -2.2454 3.7018 -1.8233 28 6 -1.2734 3.8143 -2.8239 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.8293 -0.0614 2.9497 35 1 2.2719 2.1233 -1.9977 36 1 1.9643 3.1192 -3.5665 37 1 1.4982 3.4026 -6.6221 38 1 1.3047 5.1698 -6.5352 39 1 2.5472 4.3611 -5.5502 40 1 -3.1628 5.4157 -5.1805 41 1 -4.8269 5.1933 -3.4222 42 1 -6.4134 4.4593 -0.5252 43 1 -5.6690 5.6819 -1.5836 44 1 -6.1632 4.1079 -2.2520 45 1 -2.0059 3.2274 -0.8830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358041113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:36 Heat of formation + Delta-G solvation = -40.045414 kcal Electronic energy + Delta-G solvation = -27900.330284 eV Core-core repulsion = 24075.333491 eV Total energy + Delta-G solvation = -3824.996792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26065 -40.69346 -40.09901 -37.39999 -36.97599 -34.72873 -34.22728 -32.83733 -32.54877 -31.20160 -29.10583 -28.60738 -27.69192 -25.84949 -24.93247 -23.80938 -23.52384 -21.90685 -21.32335 -19.52732 -19.23107 -18.76240 -17.91425 -17.38351 -16.94881 -16.77029 -16.68791 -16.40608 -16.19518 -15.63295 -15.49382 -15.28856 -14.64597 -14.54496 -14.43486 -14.17062 -13.91623 -13.75315 -13.62083 -13.48683 -13.19415 -12.97080 -12.87162 -12.76008 -12.72761 -12.71250 -12.18657 -12.11619 -12.03831 -11.67128 -11.56405 -11.36281 -11.24182 -11.05746 -10.56366 -10.24421 -9.80452 -9.66745 -8.86321 -8.16416 -6.33959 -0.96439 -0.26789 0.63707 1.45196 1.46569 1.58128 1.69787 2.14130 2.23919 2.30870 2.48708 3.02265 3.13648 3.15445 3.50314 3.63449 3.65651 3.79229 3.95496 4.09004 4.32444 4.40831 4.40937 4.46224 4.47464 4.53428 4.58816 4.72198 4.72523 4.84406 4.86414 4.89685 5.00513 5.03495 5.12201 5.17707 5.23001 5.26361 5.40126 5.46301 5.57041 5.62586 5.64606 5.76088 5.88395 6.14079 6.37580 6.72260 6.80933 6.84869 7.29822 7.45499 8.89264 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.003581 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.724972 B = 7817.545350 C = 9491.110624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.690 5.690 14 C 0.543 3.457 15 O -0.564 6.564 16 C -0.096 4.096 17 C -0.113 4.113 18 C 0.136 3.864 19 C -0.100 4.100 20 N -0.460 5.460 21 C 0.081 3.919 22 C -0.053 4.053 23 C -0.162 4.162 24 C 0.125 3.875 25 O -0.337 6.337 26 C 0.013 3.987 27 C -0.183 4.183 28 C -0.050 4.050 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.404 0.596 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.171 0.829 41 H 0.177 0.823 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.349 9.067 -17.036 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.339 5.339 14 C 0.330 3.670 15 O -0.445 6.445 16 C -0.107 4.107 17 C -0.134 4.134 18 C -0.016 4.016 19 C -0.157 4.157 20 N -0.170 5.170 21 C -0.041 4.041 22 C -0.071 4.071 23 C -0.182 4.182 24 C 0.080 3.920 25 O -0.251 6.251 26 C -0.081 4.081 27 C -0.202 4.202 28 C -0.052 4.052 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.184 0.816 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.188 0.812 41 H 0.194 0.806 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.184 9.271 -16.733 22.681 hybrid contribution 1.135 -0.613 1.355 1.871 sum -11.049 8.658 -15.379 20.822 Atomic orbital electron populations 1.21685 0.97228 0.99150 1.00095 1.21791 0.93482 0.99070 1.01549 1.18467 0.94015 0.89156 0.80800 0.98014 1.21579 0.91049 1.39039 1.06877 0.90690 1.25765 1.03335 0.94310 0.94980 1.70058 1.37039 1.38284 1.09878 0.85314 0.79060 0.77803 0.78263 1.18170 1.21199 1.20505 1.46183 1.14640 1.55066 1.18007 1.18397 0.82510 0.78937 0.87163 1.90583 1.51461 1.61050 1.41435 1.20436 0.94641 1.00681 0.94975 1.22624 1.00991 0.97401 0.92398 1.21943 0.92146 0.92524 0.95022 1.20885 0.95844 1.04518 0.94450 1.67622 1.01777 1.17263 1.30320 1.19090 0.95693 0.99952 0.89363 1.20930 0.89018 0.96848 1.00307 1.21433 1.02646 1.02171 0.91954 1.19246 0.88793 0.95239 0.88761 1.86122 1.22032 1.77017 1.39935 1.23470 0.80442 0.99625 1.04561 1.21279 0.91500 1.05444 1.01991 1.18461 0.92958 0.98567 0.95263 0.95361 0.93576 0.94309 0.90653 0.93874 0.92593 0.75998 0.81562 0.88542 0.89627 0.88363 0.81164 0.80593 0.86626 0.90821 0.90768 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.51 71.98 0.61 -5.15 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.24 2.24 44.25 0.10 14.34 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 5 C -0.55 -28.45 8.73 25.60 0.22 -28.22 16 6 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.87 5.29 84.65 0.45 1.31 16 8 N -0.91 -51.89 11.29 21.45 0.24 -51.65 16 9 Si 0.97 41.44 29.54 68.60 2.03 43.47 16 10 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.69 -28.89 4.98 -449.00 -2.24 -31.12 16 14 C 0.54 23.02 6.31 86.78 0.55 23.56 16 15 O -0.56 -27.84 10.66 -3.90 -0.04 -27.88 16 16 C -0.10 -3.39 5.94 -19.68 -0.12 -3.51 16 17 C -0.11 -3.05 9.20 22.67 0.21 -2.84 16 18 C 0.14 3.25 6.78 42.91 0.29 3.54 16 19 C -0.10 -1.44 10.14 71.24 0.72 -0.72 16 20 N -0.46 -12.38 10.18 -176.81 -1.80 -14.18 16 21 C 0.08 2.37 6.61 40.39 0.27 2.64 16 22 C -0.05 -1.17 9.96 22.35 0.22 -0.95 16 23 C -0.16 -3.39 8.94 22.13 0.20 -3.19 16 24 C 0.13 3.67 6.68 22.56 0.15 3.82 16 25 O -0.34 -9.25 10.48 -91.70 -0.96 -10.21 16 26 C 0.01 0.18 9.80 113.37 1.11 1.30 16 27 C -0.18 -6.76 9.21 22.57 0.21 -6.55 16 28 C -0.05 -1.74 5.76 -21.10 -0.12 -1.86 16 29 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.76 5.65 -2.39 -0.01 1.75 16 32 H 0.08 4.15 5.95 -2.39 -0.01 4.14 16 33 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.40 14.02 6.71 -92.71 -0.62 13.40 16 36 H 0.17 3.52 6.55 -2.91 -0.02 3.50 16 37 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.06 8.07 -2.39 -0.02 1.04 16 40 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.18 2.09 6.23 -2.91 -0.02 2.07 16 42 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 0.79 7.64 -2.39 -0.02 0.77 16 44 H 0.07 0.78 7.64 -2.38 -0.02 0.76 16 45 H 0.14 6.35 4.98 -2.91 -0.01 6.33 16 Total: -1.00 -72.65 363.65 2.88 -69.76 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.41 Total: 30.07 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.24 Total: -8.25 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.79 Total: -96.96 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.00 Total: -38.09 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -72.65 2.88 -69.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358041113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.718 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds