Wall clock time and date at job start Tue Mar 31 2020 15:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.50703 * 109.47304 * 175.00079 * 3 2 1 6 6 H 1.07994 * 119.99399 * 120.00023 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31512 * 119.99734 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00111 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47123 * 89.99915 * 9 7 5 11 11 H 1.48498 * 109.47161 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47329 * 329.99749 * 9 7 5 13 13 N 1.46506 * 109.46831 * 295.00216 * 3 2 1 14 14 C 1.34774 * 120.00251 * 84.99772 * 13 3 2 15 15 O 1.21644 * 119.99653 * 0.02562 * 14 13 3 16 16 C 1.47126 * 120.00223 * 179.97438 * 14 13 3 17 17 C 1.36627 * 126.97367 * 359.69005 * 16 14 13 18 18 N 1.34700 * 108.68410 * 179.83536 * 17 16 14 19 19 H 0.96999 * 124.72997 * 180.17460 * 18 17 16 20 20 C 1.36218 * 110.54825 * 0.44426 * 18 17 16 21 21 C 1.35745 * 108.67709 * 359.72820 * 20 18 17 22 22 C 1.48286 * 126.98080 * 179.97438 * 21 20 18 23 23 C 1.39439 * 120.09827 * 129.75247 * 22 21 20 24 24 C 1.38018 * 119.97996 * 179.73894 * 23 22 21 25 25 C 1.38260 * 120.18683 * 0.53951 * 24 23 22 26 26 C 1.38800 * 120.19759 * 359.71407 * 25 24 23 27 27 O 1.35902 * 119.99470 * 180.02562 * 26 25 24 28 28 C 1.42905 * 116.99968 * 0.02562 * 27 26 25 29 29 C 1.38528 * 120.01261 * 0.02728 * 26 25 24 30 30 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 31 31 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 32 32 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47359 * 240.00028 * 2 1 3 34 34 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 35 35 H 0.97007 * 120.00011 * 180.02562 * 8 7 5 36 36 H 0.97006 * 119.99584 * 264.99701 * 13 3 2 37 37 H 1.07997 * 125.65652 * 359.95830 * 17 16 14 38 38 H 1.07997 * 125.66361 * 179.71474 * 20 18 17 39 39 H 1.07995 * 120.01114 * 359.97438 * 23 22 21 40 40 H 1.08006 * 119.90614 * 180.25180 * 24 23 22 41 41 H 1.07997 * 119.90156 * 179.69715 * 25 24 23 42 42 H 1.09001 * 109.46545 * 60.00190 * 28 27 26 43 43 H 1.08994 * 109.47276 * 179.97438 * 28 27 26 44 44 H 1.08997 * 109.47096 * 300.00460 * 28 27 26 45 45 H 1.08008 * 120.08868 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 5.4540 0.8797 1.3358 9 14 3.0964 0.1091 2.5701 10 1 2.8757 -1.3271 2.2634 11 1 3.7937 0.2350 3.8751 12 1 1.7877 0.8074 2.6387 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6325 -0.4313 16 6 0.0460 3.3226 -2.6240 17 6 0.8026 3.4472 -3.7548 18 7 0.0859 4.1103 -4.6827 19 1 0.4004 4.3243 -5.5749 20 6 -1.1401 4.4438 -4.1914 21 6 -1.2366 3.9869 -2.9168 22 6 -2.3968 4.1280 -2.0041 23 6 -2.9024 3.0122 -1.3381 24 6 -3.9789 3.1473 -0.4850 25 6 -4.5656 4.3849 -0.2967 26 6 -4.0718 5.4998 -0.9598 27 8 -4.6514 6.7145 -0.7713 28 6 -5.7642 6.7705 0.1235 29 6 -2.9883 5.3746 -1.8139 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 5.8772 0.4813 2.1124 36 1 2.2719 2.1232 -1.9978 37 1 1.8078 3.0740 -3.8840 38 1 -1.9077 4.9826 -4.7270 39 1 -2.4494 2.0432 -1.4869 40 1 -4.3670 2.2829 0.0333 41 1 -5.4108 4.4845 0.3681 42 1 -5.4513 6.4384 1.1135 43 1 -6.1310 7.7951 0.1836 44 1 -6.5586 6.1207 -0.2435 45 1 -2.6033 6.2413 -2.3308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358042494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:15 Heat of formation + Delta-G solvation = 1.149935 kcal Electronic energy + Delta-G solvation = -27841.453432 eV Core-core repulsion = 24018.243004 eV Total energy + Delta-G solvation = -3823.210428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.12696 -39.83622 -38.58907 -37.23056 -35.10494 -32.35502 -32.24233 -31.62435 -30.47733 -29.52986 -28.32581 -27.29493 -27.18816 -23.22615 -22.84997 -22.34438 -22.00361 -20.30519 -19.54819 -19.09468 -18.66751 -17.20368 -16.74339 -16.07907 -15.77373 -15.73262 -15.54904 -15.36225 -14.67498 -14.19531 -14.18244 -13.89690 -13.63080 -13.49852 -13.24928 -13.09591 -12.74140 -12.72203 -12.22709 -12.15719 -11.98030 -11.78749 -11.67594 -11.35061 -11.01872 -10.97356 -10.81337 -10.75930 -10.54652 -9.85723 -9.48311 -9.21855 -9.14698 -8.95763 -8.69041 -8.42696 -8.20454 -7.87592 -7.80566 -6.16306 -4.17854 1.31925 1.70580 2.01706 2.53903 3.17442 3.27886 3.30087 3.39812 3.46315 4.00637 4.16602 4.23204 4.36984 4.84403 4.89123 5.00429 5.02725 5.09333 5.10681 5.18237 5.20266 5.32751 5.54443 5.61496 5.66032 5.70414 5.84776 6.03522 6.08259 6.11137 6.21965 6.29116 6.41319 6.61392 6.68896 6.75492 6.80244 6.84948 6.92899 6.96585 6.99803 7.07996 7.37386 7.40757 7.44903 7.48627 7.62974 8.27492 8.67437 8.83075 9.17609 9.46285 10.95905 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.003564 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.648378 B = 7855.405820 C = 9075.050669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.245 3.755 4 H 0.049 0.951 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.701 5.701 14 C 0.571 3.429 15 O -0.541 6.541 16 C -0.197 4.197 17 C 0.038 3.962 18 N -0.549 5.549 19 H 0.417 0.583 20 C -0.006 4.006 21 C -0.086 4.086 22 C 0.035 3.965 23 C -0.096 4.096 24 C -0.085 4.085 25 C -0.211 4.211 26 C 0.114 3.886 27 O -0.322 6.322 28 C 0.030 3.970 29 C -0.144 4.144 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.266 0.734 36 H 0.390 0.610 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.303 7.738 -11.713 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.141 3.859 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.349 5.349 14 C 0.358 3.642 15 O -0.420 6.420 16 C -0.207 4.207 17 C -0.096 4.096 18 N -0.143 5.143 19 H 0.253 0.747 20 C -0.135 4.135 21 C -0.093 4.093 22 C 0.035 3.965 23 C -0.115 4.115 24 C -0.103 4.103 25 C -0.230 4.230 26 C 0.070 3.930 27 O -0.236 6.236 28 C -0.066 4.066 29 C -0.162 4.162 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.222 0.778 37 H 0.192 0.808 38 H 0.187 0.813 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.595 7.872 -11.109 23.047 hybrid contribution 0.061 -0.538 0.253 0.598 sum -18.534 7.334 -10.857 22.697 Atomic orbital electron populations 1.21874 0.96910 0.98802 1.02435 1.22272 0.94437 1.00037 1.00851 1.19092 0.95352 0.88379 0.83036 0.93313 1.21075 0.88791 1.39465 1.07696 0.90322 1.24830 0.94842 0.95206 0.97681 1.69873 1.08704 1.44766 1.29850 0.86899 0.81069 0.79909 0.80843 1.20317 1.22302 1.18358 1.46014 1.14758 1.56450 1.17689 1.17317 0.82307 0.78420 0.86178 1.90762 1.51427 1.60044 1.39789 1.20714 0.95404 1.09249 0.95327 1.21969 0.98129 1.00331 0.89194 1.41377 1.13135 1.45266 1.14558 0.74667 1.21745 0.89153 1.07062 0.95506 1.19008 0.93362 1.03719 0.93233 1.17721 0.91856 0.92009 0.94958 1.21064 0.95272 0.98815 0.96329 1.20815 0.95740 0.96505 0.97263 1.21156 1.03784 0.93219 1.04813 1.18774 0.93848 0.83988 0.96413 1.86031 1.46058 1.28400 1.63117 1.22982 0.87499 1.03226 0.92851 1.20320 0.96670 0.97475 1.01780 0.92861 0.92680 0.95252 0.92473 0.92995 0.92382 0.77752 0.80795 0.81263 0.85735 0.86100 0.86110 0.92769 0.88633 0.92915 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.25 5.86 1.83 -69.08 -0.13 5.73 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.53 -14.44 9.31 -34.44 -0.32 -14.76 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 9 Si 0.88 22.07 24.41 -169.99 -4.15 17.92 16 10 H -0.28 -6.68 6.83 56.52 0.39 -6.30 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 13 N -0.70 -14.04 5.01 -56.10 -0.28 -14.32 16 14 C 0.57 11.17 6.37 -12.65 -0.08 11.09 16 15 O -0.54 -12.03 11.20 5.24 0.06 -11.97 16 16 C -0.20 -3.11 6.29 -103.15 -0.65 -3.76 16 17 C 0.04 0.45 11.38 -16.88 -0.19 0.26 16 18 N -0.55 -4.86 5.88 -12.64 -0.07 -4.94 16 19 H 0.42 2.04 8.96 -40.82 -0.37 1.68 16 20 C -0.01 -0.06 11.80 -16.50 -0.19 -0.25 16 21 C -0.09 -1.26 5.78 -102.94 -0.60 -1.85 16 22 C 0.04 0.55 5.40 -104.93 -0.57 -0.02 16 23 C -0.10 -1.53 7.93 -39.22 -0.31 -1.84 16 24 C -0.09 -1.20 10.03 -39.65 -0.40 -1.60 16 25 C -0.21 -2.78 9.03 -39.37 -0.36 -3.13 16 26 C 0.11 1.60 6.68 -39.27 -0.26 1.33 16 27 O -0.32 -4.08 10.49 -19.43 -0.20 -4.28 16 28 C 0.03 0.25 9.81 101.05 0.99 1.24 16 29 C -0.14 -2.08 9.66 -39.08 -0.38 -2.46 16 30 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 31 H 0.05 1.10 5.64 -51.93 -0.29 0.81 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.23 3.21 -51.93 -0.17 1.06 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.39 6.81 7.47 -40.82 -0.31 6.51 16 37 H 0.17 1.60 7.44 -52.49 -0.39 1.21 16 38 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 2.10 7.48 -52.49 -0.39 1.71 16 40 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.12 1.27 6.28 -52.49 -0.33 0.94 16 42 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 45 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -34.67 362.98 -7.69 -42.36 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.93 Total: 9.41 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -3.36 Total: -13.73 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.42 Total: -45.18 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.15 Total: -16.25 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.15 Total: 17.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.67 -7.69 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358042494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.511 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds