Wall clock time and date at job start Tue Mar 31 2020 15:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.50703 * 109.47304 * 175.00079 * 3 2 1 6 6 H 1.07994 * 119.99399 * 120.00023 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31512 * 119.99734 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00111 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47123 * 89.99915 * 9 7 5 11 11 H 1.48498 * 109.47161 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47329 * 329.99749 * 9 7 5 13 13 N 1.46506 * 109.46831 * 295.00216 * 3 2 1 14 14 C 1.34774 * 120.00251 * 84.99772 * 13 3 2 15 15 O 1.21644 * 119.99653 * 0.02562 * 14 13 3 16 16 C 1.47126 * 120.00223 * 179.97438 * 14 13 3 17 17 C 1.36627 * 126.97367 * 359.69005 * 16 14 13 18 18 N 1.34700 * 108.68410 * 179.83536 * 17 16 14 19 19 H 0.96999 * 124.72997 * 180.17460 * 18 17 16 20 20 C 1.36218 * 110.54825 * 0.44426 * 18 17 16 21 21 C 1.35745 * 108.67709 * 359.72820 * 20 18 17 22 22 C 1.48286 * 126.98080 * 179.97438 * 21 20 18 23 23 C 1.39439 * 120.09827 * 129.75247 * 22 21 20 24 24 C 1.38018 * 119.97996 * 179.73894 * 23 22 21 25 25 C 1.38260 * 120.18683 * 0.53951 * 24 23 22 26 26 C 1.38800 * 120.19759 * 359.71407 * 25 24 23 27 27 O 1.35902 * 119.99470 * 180.02562 * 26 25 24 28 28 C 1.42905 * 116.99968 * 0.02562 * 27 26 25 29 29 C 1.38528 * 120.01261 * 0.02728 * 26 25 24 30 30 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 31 31 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 32 32 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47359 * 240.00028 * 2 1 3 34 34 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 35 35 H 0.97007 * 120.00011 * 180.02562 * 8 7 5 36 36 H 0.97006 * 119.99584 * 264.99701 * 13 3 2 37 37 H 1.07997 * 125.65652 * 359.95830 * 17 16 14 38 38 H 1.07997 * 125.66361 * 179.71474 * 20 18 17 39 39 H 1.07995 * 120.01114 * 359.97438 * 23 22 21 40 40 H 1.08006 * 119.90614 * 180.25180 * 24 23 22 41 41 H 1.07997 * 119.90156 * 179.69715 * 25 24 23 42 42 H 1.09001 * 109.46545 * 60.00190 * 28 27 26 43 43 H 1.08994 * 109.47276 * 179.97438 * 28 27 26 44 44 H 1.08997 * 109.47096 * 300.00460 * 28 27 26 45 45 H 1.08008 * 120.08868 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 5.4540 0.8797 1.3358 9 14 3.0964 0.1091 2.5701 10 1 2.8757 -1.3271 2.2634 11 1 3.7937 0.2350 3.8751 12 1 1.7877 0.8074 2.6387 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6325 -0.4313 16 6 0.0460 3.3226 -2.6240 17 6 0.8026 3.4472 -3.7548 18 7 0.0859 4.1103 -4.6827 19 1 0.4004 4.3243 -5.5749 20 6 -1.1401 4.4438 -4.1914 21 6 -1.2366 3.9869 -2.9168 22 6 -2.3968 4.1280 -2.0041 23 6 -2.9024 3.0122 -1.3381 24 6 -3.9789 3.1473 -0.4850 25 6 -4.5656 4.3849 -0.2967 26 6 -4.0718 5.4998 -0.9598 27 8 -4.6514 6.7145 -0.7713 28 6 -5.7642 6.7705 0.1235 29 6 -2.9883 5.3746 -1.8139 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 5.8772 0.4813 2.1124 36 1 2.2719 2.1232 -1.9978 37 1 1.8078 3.0740 -3.8840 38 1 -1.9077 4.9826 -4.7270 39 1 -2.4494 2.0432 -1.4869 40 1 -4.3670 2.2829 0.0333 41 1 -5.4108 4.4845 0.3681 42 1 -5.4513 6.4384 1.1135 43 1 -6.1310 7.7951 0.1836 44 1 -6.5586 6.1207 -0.2435 45 1 -2.6033 6.2413 -2.3308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358042494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:13 Heat of formation + Delta-G solvation = -22.762600 kcal Electronic energy + Delta-G solvation = -27842.490357 eV Core-core repulsion = 24018.243004 eV Total energy + Delta-G solvation = -3824.247353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.10291 -40.79928 -40.13470 -38.21371 -36.88749 -34.34190 -33.35252 -33.21577 -31.51076 -30.69863 -29.40650 -29.03229 -27.97065 -24.88744 -23.92727 -23.83967 -23.08142 -21.86197 -20.73172 -20.50346 -19.68599 -18.59088 -18.11147 -17.38159 -17.06514 -16.94689 -16.76090 -16.56847 -16.11286 -15.86662 -15.23890 -15.11565 -14.85409 -14.76984 -14.43568 -14.32103 -14.17686 -13.87436 -13.75526 -13.60895 -13.49365 -13.06973 -12.88563 -12.79902 -12.72990 -12.44118 -12.31547 -11.90787 -11.82205 -11.72762 -11.34280 -11.18659 -10.83097 -10.58365 -10.17357 -9.69392 -9.36562 -9.19378 -8.82506 -8.36378 -6.40457 0.27003 0.61771 0.94816 1.27114 1.35522 1.46251 1.55566 2.27776 2.36195 2.44578 2.72146 2.76005 2.97856 3.01576 3.91018 3.95503 4.12392 4.17766 4.26988 4.29461 4.36048 4.37078 4.42271 4.45609 4.50030 4.59400 4.62181 4.70708 4.75164 4.84781 4.91098 5.04051 5.06314 5.17781 5.21538 5.30196 5.37215 5.47153 5.55556 5.56921 5.65074 5.78827 5.82195 5.91405 5.99595 6.22514 6.53001 6.61566 6.71816 7.09196 7.24560 7.69976 8.78848 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.003564 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.648378 B = 7855.405820 C = 9075.050669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 C 0.254 3.746 4 H 0.016 0.984 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.030 3.970 8 N -0.935 5.935 9 Si 0.934 3.066 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.569 3.431 15 O -0.575 6.575 16 C -0.244 4.244 17 C 0.063 3.937 18 N -0.525 5.525 19 H 0.441 0.559 20 C 0.021 3.979 21 C -0.123 4.123 22 C 0.026 3.974 23 C -0.121 4.121 24 C -0.093 4.093 25 C -0.214 4.214 26 C 0.110 3.890 27 O -0.335 6.335 28 C 0.019 3.981 29 C -0.157 4.157 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.269 0.731 36 H 0.401 0.599 37 H 0.200 0.800 38 H 0.205 0.795 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.056 0.944 43 H 0.120 0.880 44 H 0.066 0.934 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.019 8.359 -13.491 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.173 4.173 3 C 0.149 3.851 4 H 0.034 0.966 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.574 5.574 9 Si 0.762 3.238 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.189 1.189 13 N -0.351 5.351 14 C 0.359 3.641 15 O -0.457 6.457 16 C -0.254 4.254 17 C -0.074 4.074 18 N -0.120 5.120 19 H 0.282 0.718 20 C -0.109 4.109 21 C -0.130 4.130 22 C 0.025 3.975 23 C -0.139 4.139 24 C -0.111 4.111 25 C -0.232 4.232 26 C 0.065 3.935 27 O -0.249 6.249 28 C -0.075 4.075 29 C -0.176 4.176 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.236 0.764 37 H 0.217 0.783 38 H 0.222 0.778 39 H 0.122 0.878 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.075 0.925 43 H 0.138 0.862 44 H 0.085 0.915 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.320 8.510 -12.952 25.555 hybrid contribution 0.564 -0.599 0.710 1.087 sum -19.755 7.911 -12.242 24.550 Atomic orbital electron populations 1.21728 0.95276 1.00182 1.01569 1.22183 0.95797 0.98575 1.00776 1.18685 0.92957 0.89462 0.83959 0.96571 1.21319 0.90426 1.38156 1.06847 0.92404 1.25506 0.95674 0.95979 0.99761 1.69973 1.10158 1.46389 1.30859 0.86064 0.79271 0.79984 0.78463 1.18485 1.22151 1.18870 1.45814 1.15650 1.56897 1.16741 1.17858 0.81326 0.77657 0.87289 1.90733 1.52210 1.61255 1.41456 1.20467 0.97510 1.12254 0.95169 1.22208 0.98502 0.98515 0.88141 1.41388 1.12184 1.43329 1.15110 0.71771 1.22167 0.89805 1.04846 0.94070 1.19194 0.93014 1.05757 0.94990 1.17912 0.92251 0.92096 0.95207 1.21041 0.96459 0.98373 0.98061 1.21048 0.95449 0.97645 0.96982 1.21405 1.04354 0.92508 1.04947 1.18952 0.93745 0.84726 0.96066 1.86017 1.47248 1.27689 1.63994 1.23306 0.86637 1.05277 0.92278 1.20491 0.97182 0.97455 1.02431 0.94711 0.92655 0.92584 0.91357 0.94078 0.92162 0.76369 0.78349 0.77788 0.87795 0.84766 0.83547 0.92508 0.86196 0.91503 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.51 71.98 0.61 -4.65 16 2 C -0.13 -6.00 5.11 30.60 0.16 -5.84 16 3 C 0.25 12.38 1.83 44.25 0.08 12.46 16 4 H 0.02 0.91 6.63 -2.39 -0.02 0.89 16 5 C -0.53 -29.31 9.31 25.60 0.24 -29.08 16 6 H 0.06 3.37 7.98 -2.91 -0.02 3.35 16 7 C 0.03 1.74 5.45 84.65 0.46 2.20 16 8 N -0.93 -56.73 13.96 21.45 0.30 -56.43 16 9 Si 0.93 46.07 24.41 68.60 1.67 47.75 16 10 H -0.26 -11.98 6.83 99.48 0.68 -11.30 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 12 H -0.26 -13.12 6.53 99.48 0.65 -12.47 16 13 N -0.70 -28.45 5.01 -449.63 -2.25 -30.71 16 14 C 0.57 22.69 6.37 86.58 0.55 23.24 16 15 O -0.58 -26.57 11.20 -4.17 -0.05 -26.62 16 16 C -0.24 -7.56 6.29 -18.91 -0.12 -7.68 16 17 C 0.06 1.32 11.38 83.88 0.95 2.27 16 18 N -0.52 -7.32 5.88 -193.89 -1.14 -8.46 16 19 H 0.44 2.24 8.96 -92.71 -0.83 1.40 16 20 C 0.02 0.39 11.80 83.43 0.98 1.37 16 21 C -0.12 -3.48 5.78 -18.77 -0.11 -3.59 16 22 C 0.03 0.81 5.40 -20.06 -0.11 0.71 16 23 C -0.12 -3.97 7.93 22.51 0.18 -3.79 16 24 C -0.09 -2.66 10.03 22.22 0.22 -2.44 16 25 C -0.21 -5.46 9.03 22.41 0.20 -5.26 16 26 C 0.11 2.99 6.68 22.47 0.15 3.14 16 27 O -0.34 -8.01 10.49 -92.44 -0.97 -8.98 16 28 C 0.02 0.28 9.81 113.37 1.11 1.40 16 29 C -0.16 -4.48 9.66 22.59 0.22 -4.26 16 30 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 31 H 0.05 2.22 5.64 -2.39 -0.01 2.21 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.04 1.91 3.21 -2.39 -0.01 1.90 16 35 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 36 H 0.40 13.99 7.47 -92.70 -0.69 13.30 16 37 H 0.20 3.04 7.44 -2.91 -0.02 3.02 16 38 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.10 3.73 7.48 -2.91 -0.02 3.71 16 40 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 41 H 0.15 2.83 6.28 -2.91 -0.02 2.82 16 42 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 43 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 45 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -78.44 362.98 2.79 -75.65 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.56 Total: 27.61 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.79 Total: -19.80 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -3.09 Total: -95.60 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.02 Total: -35.59 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.75 kcal Total: -78.44 2.79 -75.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358042494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.884 kcal (2) G-P(sol) polarization free energy of solvation -78.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds