Wall clock time and date at job start Tue Mar 31 2020 15:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47082 * 90.00754 * 9 7 5 11 11 H 1.48501 * 109.47111 * 210.00281 * 9 7 5 12 12 H 1.48494 * 109.47432 * 330.00650 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 S 1.81396 * 109.46989 * 179.72353 * 16 14 13 18 18 C 1.81397 * 102.99966 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47440 * 179.97438 * 18 17 16 20 20 O 1.21284 * 119.99373 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00084 * 179.97438 * 19 18 17 22 22 C 1.46925 * 120.63175 * 359.71906 * 21 19 18 23 23 C 1.53622 * 108.54258 * 126.37012 * 22 21 19 24 24 C 1.53038 * 109.24290 * 54.85202 * 23 22 21 25 25 C 1.53039 * 109.54150 * 298.51432 * 24 23 22 26 26 C 1.46927 * 120.62698 * 180.02562 * 21 19 18 27 27 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 28 28 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 29 29 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 31 31 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 32 32 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 34 34 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 35 35 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 36 36 H 1.09007 * 109.47210 * 299.99795 * 18 17 16 37 37 H 1.08994 * 109.47231 * 59.99692 * 18 17 16 38 38 H 1.08996 * 109.58796 * 246.20024 * 22 21 19 39 39 H 1.08997 * 109.58487 * 6.62880 * 22 21 19 40 40 H 1.09004 * 109.63277 * 294.86480 * 23 22 21 41 41 H 1.08992 * 109.45969 * 174.73952 * 23 22 21 42 42 H 1.09001 * 109.46187 * 178.48929 * 24 23 22 43 43 H 1.09004 * 109.45702 * 58.53157 * 24 23 22 44 44 H 1.09001 * 109.49808 * 301.41181 * 25 24 23 45 45 H 1.08997 * 109.49723 * 181.31284 * 25 24 23 46 46 H 1.09001 * 109.59162 * 353.37172 * 26 21 19 47 47 H 1.08995 * 109.58787 * 113.80131 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1543 12 1 6.6131 0.8394 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 16 -1.6508 3.9866 -2.5004 18 6 -1.9480 4.7406 -4.1232 19 6 -3.3312 5.3381 -4.1539 20 8 -4.0458 5.2631 -3.1768 21 7 -3.7735 5.9567 -5.2666 22 6 -2.9167 6.0619 -6.4555 23 6 -3.6852 5.5027 -7.6625 24 6 -5.0258 6.2301 -7.7879 25 6 -5.8613 5.9843 -6.5295 26 6 -5.1193 6.5445 -5.3114 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8294 -0.0619 2.9494 33 1 2.2719 2.1232 -1.9977 34 1 0.7225 4.1501 -2.8716 35 1 0.0680 2.6061 -3.4682 36 1 -1.2099 5.5228 -4.3012 37 1 -1.8644 3.9790 -4.8985 38 1 -2.6638 7.1072 -6.6323 39 1 -2.0054 5.4842 -6.3013 40 1 -3.8617 4.4362 -7.5222 41 1 -3.1005 5.6585 -8.5690 42 1 -5.5625 5.8548 -8.6592 43 1 -4.8492 7.2996 -7.9033 44 1 -6.0173 4.9133 -6.3998 45 1 -6.8251 6.4834 -6.6295 46 1 -5.6618 6.2855 -4.4021 47 1 -5.0420 7.6284 -5.3970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358061011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:16 Heat of formation + Delta-G solvation = -80.024066 kcal Electronic energy + Delta-G solvation = -25412.955401 eV Core-core repulsion = 21721.668956 eV Total energy + Delta-G solvation = -3691.286446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42824 -38.95081 -37.66107 -35.06480 -33.46056 -32.44499 -31.86074 -31.22048 -29.94810 -29.16405 -26.69293 -25.59708 -23.64867 -23.01203 -21.49802 -20.53776 -19.45667 -19.30840 -17.65650 -17.26768 -16.47472 -16.04860 -15.92029 -15.54271 -15.20205 -15.06015 -14.99228 -14.59326 -14.39235 -14.12792 -13.85181 -13.56427 -13.22406 -13.09700 -12.88579 -12.71752 -12.60542 -12.37707 -11.77348 -11.71946 -11.45646 -11.39276 -11.23870 -11.21072 -11.04707 -10.96142 -10.83914 -10.32199 -10.16143 -10.10355 -9.77422 -9.61059 -9.11225 -9.03499 -9.03367 -8.50077 -7.86267 -7.47513 -6.12453 -4.22258 1.36012 2.33794 2.55061 2.67868 3.23990 3.30374 3.31716 3.33491 4.04870 4.09096 4.24560 4.36258 4.36983 4.45697 4.59974 4.74612 4.79687 4.88360 4.99318 5.03256 5.17373 5.20174 5.25948 5.26464 5.30927 5.37729 5.45900 5.53478 5.55455 5.62799 5.83286 6.12029 6.42472 6.49276 6.69105 6.97128 7.06030 7.21948 7.37594 7.44018 7.61606 7.72013 7.86382 7.89789 8.18198 8.62126 8.76147 9.09078 9.44856 10.92821 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030173 B = 0.002049 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.747644 B =13659.137275 C =14056.597031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.518 3.482 15 O -0.526 6.526 16 C -0.147 4.147 17 S -0.101 6.101 18 C -0.154 4.154 19 C 0.536 3.464 20 O -0.513 6.513 21 N -0.614 5.614 22 C 0.105 3.895 23 C -0.137 4.137 24 C -0.120 4.120 25 C -0.136 4.136 26 C 0.112 3.888 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.272 11.455 -23.217 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.300 3.700 15 O -0.403 6.403 16 C -0.299 4.299 17 S 0.124 5.876 18 C -0.305 4.305 19 C 0.322 3.678 20 O -0.387 6.387 21 N -0.349 5.349 22 C -0.018 4.018 23 C -0.175 4.175 24 C -0.158 4.158 25 C -0.174 4.174 26 C -0.011 4.011 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.859 11.218 -20.912 27.482 hybrid contribution 2.345 0.043 -1.660 2.873 sum -11.514 11.262 -22.572 27.729 Atomic orbital electron populations 1.21844 0.98195 0.98125 1.01357 1.21939 0.92698 0.99712 1.02268 1.18823 0.94217 0.89212 0.80796 0.93181 1.21211 0.90639 1.39136 1.06330 0.92110 1.24891 0.98614 0.94815 0.95406 1.69897 1.35130 1.37455 1.09314 0.86450 0.84837 0.77659 0.78141 1.20568 1.21071 1.19909 1.46422 1.14169 1.55975 1.18729 1.19364 0.83310 0.79712 0.87600 1.90735 1.50952 1.58913 1.39743 1.23758 0.99712 1.04134 1.02295 1.88343 1.14762 1.72023 1.12442 1.23652 0.98634 1.04351 1.03824 1.19708 0.87647 0.77864 0.82569 1.90771 1.57095 1.57232 1.33643 1.48023 1.16149 1.57409 1.13364 1.21881 0.93494 1.01759 0.84679 1.22006 0.96879 1.00789 0.97822 1.21520 0.95781 1.00669 0.97839 1.21934 0.98765 1.02127 0.94553 1.21614 0.82428 0.97139 0.99875 0.93075 0.94254 0.95812 0.95073 0.88248 0.92524 0.77964 0.87862 0.87952 0.87444 0.87480 0.90989 0.89583 0.91254 0.90537 0.91573 0.91688 0.91367 0.90607 0.88727 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.03 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.70 -14.22 5.02 -54.93 -0.28 -14.50 16 14 C 0.52 10.15 6.42 -10.98 -0.07 10.08 16 15 O -0.53 -12.55 13.00 5.55 0.07 -12.48 16 16 C -0.15 -2.06 6.42 36.01 0.23 -1.83 16 17 S -0.10 -1.58 20.01 -107.50 -2.15 -3.73 16 18 C -0.15 -1.57 4.77 36.01 0.17 -1.40 16 19 C 0.54 6.45 7.72 -10.98 -0.08 6.36 16 20 O -0.51 -8.51 15.28 5.55 0.08 -8.42 16 21 N -0.61 -5.27 2.97 -172.48 -0.51 -5.78 16 22 C 0.11 0.55 6.37 -3.49 -0.02 0.53 16 23 C -0.14 -0.60 6.10 -26.39 -0.16 -0.76 16 24 C -0.12 -0.54 5.88 -26.69 -0.16 -0.70 16 25 C -0.14 -0.78 6.08 -26.59 -0.16 -0.94 16 26 C 0.11 0.86 6.43 -3.69 -0.02 0.84 16 27 H 0.05 1.25 7.85 -51.93 -0.41 0.84 16 28 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16 34 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.11 0.83 7.93 -51.92 -0.41 0.42 16 37 H 0.11 0.83 7.70 -51.93 -0.40 0.43 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.36 5.93 -51.93 -0.31 0.05 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.93 7.01 -51.93 -0.36 0.56 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -33.79 382.73 -9.92 -43.71 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.85 Total: 3.87 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.66 Total: 0.14 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.16 Total: -44.31 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.16 Total: -20.90 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.15 Total: -3.73 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.79 -9.92 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358061011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.317 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds