Wall clock time and date at job start Tue Mar 31 2020 15:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47082 * 90.00754 * 9 7 5 11 11 H 1.48501 * 109.47111 * 210.00281 * 9 7 5 12 12 H 1.48494 * 109.47432 * 330.00650 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 S 1.81396 * 109.46989 * 179.72353 * 16 14 13 18 18 C 1.81397 * 102.99966 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47440 * 179.97438 * 18 17 16 20 20 O 1.21284 * 119.99373 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00084 * 179.97438 * 19 18 17 22 22 C 1.46925 * 120.63175 * 359.71906 * 21 19 18 23 23 C 1.53622 * 108.54258 * 126.37012 * 22 21 19 24 24 C 1.53038 * 109.24290 * 54.85202 * 23 22 21 25 25 C 1.53039 * 109.54150 * 298.51432 * 24 23 22 26 26 C 1.46927 * 120.62698 * 180.02562 * 21 19 18 27 27 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 28 28 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 29 29 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 31 31 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 32 32 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 34 34 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 35 35 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 36 36 H 1.09007 * 109.47210 * 299.99795 * 18 17 16 37 37 H 1.08994 * 109.47231 * 59.99692 * 18 17 16 38 38 H 1.08996 * 109.58796 * 246.20024 * 22 21 19 39 39 H 1.08997 * 109.58487 * 6.62880 * 22 21 19 40 40 H 1.09004 * 109.63277 * 294.86480 * 23 22 21 41 41 H 1.08992 * 109.45969 * 174.73952 * 23 22 21 42 42 H 1.09001 * 109.46187 * 178.48929 * 24 23 22 43 43 H 1.09004 * 109.45702 * 58.53157 * 24 23 22 44 44 H 1.09001 * 109.49808 * 301.41181 * 25 24 23 45 45 H 1.08997 * 109.49723 * 181.31284 * 25 24 23 46 46 H 1.09001 * 109.59162 * 353.37172 * 26 21 19 47 47 H 1.08995 * 109.58787 * 113.80131 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1543 12 1 6.6131 0.8394 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 16 -1.6508 3.9866 -2.5004 18 6 -1.9480 4.7406 -4.1232 19 6 -3.3312 5.3381 -4.1539 20 8 -4.0458 5.2631 -3.1768 21 7 -3.7735 5.9567 -5.2666 22 6 -2.9167 6.0619 -6.4555 23 6 -3.6852 5.5027 -7.6625 24 6 -5.0258 6.2301 -7.7879 25 6 -5.8613 5.9843 -6.5295 26 6 -5.1193 6.5445 -5.3114 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8294 -0.0619 2.9494 33 1 2.2719 2.1232 -1.9977 34 1 0.7225 4.1501 -2.8716 35 1 0.0680 2.6061 -3.4682 36 1 -1.2099 5.5228 -4.3012 37 1 -1.8644 3.9790 -4.8985 38 1 -2.6638 7.1072 -6.6323 39 1 -2.0054 5.4842 -6.3013 40 1 -3.8617 4.4362 -7.5222 41 1 -3.1005 5.6585 -8.5690 42 1 -5.5625 5.8548 -8.6592 43 1 -4.8492 7.2996 -7.9033 44 1 -6.0173 4.9133 -6.3998 45 1 -6.8251 6.4834 -6.6295 46 1 -5.6618 6.2855 -4.4021 47 1 -5.0420 7.6284 -5.3970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358061011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:15 Heat of formation + Delta-G solvation = -102.565855 kcal Electronic energy + Delta-G solvation = -25413.932886 eV Core-core repulsion = 21721.668956 eV Total energy + Delta-G solvation = -3692.263931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18104 -40.60183 -38.36316 -36.93501 -34.32287 -34.10725 -33.04228 -32.36733 -30.93572 -30.35433 -28.57911 -26.15535 -24.97209 -24.12083 -22.39567 -21.94954 -21.14827 -20.07989 -18.99075 -18.36131 -17.68269 -17.53748 -17.01710 -16.87060 -16.51294 -16.42496 -15.88691 -15.42221 -15.12687 -15.04237 -14.80270 -14.64835 -14.54017 -14.27275 -14.15056 -13.85513 -13.54895 -13.48916 -13.21350 -13.12630 -13.06065 -12.82157 -12.67997 -12.20997 -12.15657 -12.02945 -11.87979 -11.64205 -11.57321 -11.49619 -11.04858 -11.01107 -10.76852 -10.74824 -10.51124 -9.71061 -9.64281 -8.65795 -8.14639 -6.32280 0.32584 1.46075 1.46447 1.48215 1.54720 1.57054 1.81989 1.98207 2.37302 2.65968 3.14921 3.40705 3.84849 3.96418 3.97844 4.01069 4.08602 4.13654 4.17685 4.21303 4.34567 4.36402 4.49583 4.52594 4.57761 4.62445 4.77431 4.82521 4.90616 4.93317 5.06571 5.06976 5.16585 5.23638 5.26790 5.44485 5.45481 5.53769 5.56908 5.63030 5.80325 5.93283 6.17927 6.26810 6.76186 6.96549 7.04723 7.34876 7.58946 8.90759 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030173 B = 0.002049 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.747644 B =13659.137275 C =14056.597031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.699 5.699 14 C 0.510 3.490 15 O -0.575 6.575 16 C -0.118 4.118 17 S -0.202 6.202 18 C -0.124 4.124 19 C 0.525 3.475 20 O -0.574 6.574 21 N -0.606 5.606 22 C 0.097 3.903 23 C -0.134 4.134 24 C -0.119 4.119 25 C -0.130 4.130 26 C 0.107 3.893 27 H 0.021 0.979 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 12.390 -27.467 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.188 4.188 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.349 5.349 14 C 0.295 3.705 15 O -0.455 6.455 16 C -0.268 4.268 17 S 0.023 5.977 18 C -0.275 4.275 19 C 0.312 3.688 20 O -0.453 6.453 21 N -0.339 5.339 22 C -0.025 4.025 23 C -0.172 4.172 24 C -0.157 4.157 25 C -0.169 4.169 26 C -0.016 4.016 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.050 12.180 -25.265 30.526 hybrid contribution 1.682 -0.165 -0.404 1.738 sum -10.367 12.015 -25.668 30.178 Atomic orbital electron populations 1.21675 0.97190 0.99030 1.00154 1.21783 0.93455 0.99239 1.01408 1.18367 0.93713 0.89096 0.81308 0.98734 1.21578 0.91267 1.38790 1.06718 0.90651 1.25811 1.03389 0.94468 0.95104 1.70064 1.37111 1.38392 1.09897 0.85354 0.79054 0.77276 0.78683 1.20581 1.21200 1.18138 1.46123 1.15138 1.55915 1.17734 1.20281 0.82206 0.78856 0.89151 1.90729 1.52244 1.60398 1.42146 1.23517 0.98470 1.05487 0.99359 1.88807 1.17011 1.73526 1.18342 1.23589 0.98161 1.05579 1.00160 1.20132 0.88096 0.77881 0.82643 1.90753 1.58755 1.59807 1.36019 1.48162 1.16642 1.55701 1.13430 1.22238 0.93567 1.03381 0.83305 1.22011 0.96945 1.00002 0.98282 1.21535 0.95702 1.01449 0.96972 1.21896 0.99484 1.01009 0.94472 1.21695 0.82275 0.98104 0.99511 0.96014 0.93696 0.93682 0.93681 0.91119 0.92681 0.75754 0.84347 0.84179 0.84042 0.84158 0.89196 0.87830 0.92304 0.88303 0.90783 0.90618 0.93020 0.89487 0.91768 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.13 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.28 14.22 2.24 44.24 0.10 14.32 16 4 H -0.01 -0.32 7.58 -2.38 -0.02 -0.34 16 5 C -0.55 -28.36 8.73 25.60 0.22 -28.14 16 6 H 0.08 3.61 7.74 -2.91 -0.02 3.58 16 7 C 0.01 0.66 5.29 84.65 0.45 1.10 16 8 N -0.92 -52.77 11.29 21.45 0.24 -52.52 16 9 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 N -0.70 -27.62 5.02 -446.09 -2.24 -29.86 16 14 C 0.51 19.71 6.42 87.66 0.56 20.27 16 15 O -0.57 -28.41 13.00 -3.04 -0.04 -28.45 16 16 C -0.12 -2.96 6.42 71.24 0.46 -2.50 16 17 S -0.20 -6.22 20.01 -56.49 -1.13 -7.35 16 18 C -0.12 -2.18 4.77 71.24 0.34 -1.84 16 19 C 0.52 12.21 7.72 87.66 0.68 12.88 16 20 O -0.57 -19.94 15.28 -3.04 -0.05 -19.98 16 21 N -0.61 -9.35 2.97 -817.99 -2.43 -11.78 16 22 C 0.10 0.64 6.37 86.51 0.55 1.19 16 23 C -0.13 -0.71 6.10 30.82 0.19 -0.52 16 24 C -0.12 -0.72 5.88 30.62 0.18 -0.54 16 25 C -0.13 -1.36 6.08 30.69 0.19 -1.17 16 26 C 0.11 1.59 6.43 86.38 0.56 2.15 16 27 H 0.02 1.09 7.85 -2.38 -0.02 1.07 16 28 H 0.04 2.01 5.64 -2.39 -0.01 2.00 16 29 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 3.94 5.95 -2.39 -0.01 3.92 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.41 12.88 8.54 -92.71 -0.79 12.08 16 34 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.14 1.54 7.93 -2.39 -0.02 1.52 16 37 H 0.14 1.55 7.70 -2.39 -0.02 1.53 16 38 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.10 0.34 5.93 -2.39 -0.01 0.32 16 40 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 1.36 7.01 -2.39 -0.02 1.34 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -80.58 382.73 1.80 -78.77 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.17 Total: 21.12 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.25 Total: 6.31 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -4.42 Total: -94.16 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -0.09 Total: -48.43 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: -6.22 SS G_CDS: -1.13 Total: -7.35 kcal Total: -80.58 1.80 -78.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358061011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.792 kcal (2) G-P(sol) polarization free energy of solvation -80.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds