Wall clock time and date at job start Tue Mar 31 2020 16:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00031 * 2 1 4 4 N 1.46503 * 109.46866 * 125.00309 * 3 2 1 5 5 C 1.46500 * 120.00037 * 270.00048 * 4 3 2 6 6 C 1.50703 * 109.47089 * 270.00183 * 5 4 3 7 7 H 1.07995 * 120.00095 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00165 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00125 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47116 * 89.99959 * 10 8 6 12 12 H 1.48502 * 109.47133 * 210.00379 * 10 8 6 13 13 H 1.48497 * 109.47116 * 330.00494 * 10 8 6 14 14 C 1.34772 * 119.99990 * 90.00607 * 4 3 2 15 15 O 1.21287 * 120.00039 * 180.02562 * 14 4 3 16 16 C 1.50706 * 120.00180 * 359.97438 * 14 4 3 17 17 N 1.46498 * 109.47027 * 180.02562 * 16 14 4 18 18 C 1.46042 * 119.40986 * 90.00444 * 17 16 14 19 19 C 1.52695 * 111.04589 * 142.27840 * 18 17 16 20 20 C 1.50554 * 109.92403 * 51.16162 * 19 18 17 21 21 C 1.37767 * 120.95293 * 146.00296 * 20 19 18 22 22 C 1.38431 * 119.93308 * 179.97438 * 21 20 19 23 23 C 1.38385 * 120.44519 * 359.97438 * 22 21 20 24 24 C 1.38088 * 120.18023 * 0.02562 * 23 22 21 25 25 C 1.39236 * 119.56756 * 0.02562 * 24 23 22 26 26 C 1.34824 * 119.41437 * 270.01954 * 17 16 14 27 27 O 1.21560 * 120.44713 * 2.71687 * 26 17 16 28 28 H 1.08008 * 119.99964 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99802 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00136 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47523 * 5.00563 * 3 2 1 32 32 H 1.08997 * 109.47572 * 245.00176 * 3 2 1 33 33 H 1.08993 * 109.47461 * 30.00286 * 5 4 3 34 34 H 1.09001 * 109.47389 * 150.00350 * 5 4 3 35 35 H 0.96995 * 119.99993 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.46484 * 60.00520 * 16 14 4 37 37 H 1.08996 * 109.46772 * 300.00689 * 16 14 4 38 38 H 1.08997 * 109.16434 * 21.87121 * 18 17 16 39 39 H 1.08998 * 109.16055 * 262.67719 * 18 17 16 40 40 H 1.09002 * 109.39362 * 291.02188 * 19 18 17 41 41 H 1.09004 * 109.32418 * 171.25325 * 19 18 17 42 42 H 1.08004 * 120.03433 * 359.97438 * 21 20 19 43 43 H 1.07997 * 119.78167 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.90792 * 179.73189 * 23 22 21 45 45 H 1.08001 * 120.22127 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3040 3.8368 1.6370 8 6 2.5195 4.0663 3.6088 9 7 2.7690 5.3567 3.6576 10 14 1.7250 3.2129 5.0682 11 1 2.7810 2.7216 5.9894 12 1 0.8489 4.1731 5.7864 13 1 0.9133 2.0654 4.5889 14 6 4.2497 0.8662 0.9823 15 8 5.0197 0.8878 1.9191 16 6 4.6969 0.3175 -0.3482 17 7 6.0912 -0.1216 -0.2515 18 6 6.3844 -1.4967 0.1433 19 6 7.5795 -2.0468 -0.6317 20 6 8.7371 -1.0888 -0.5373 21 6 10.0355 -1.5478 -0.4993 22 6 11.0840 -0.6481 -0.4129 23 6 10.8380 0.7128 -0.3648 24 6 9.5411 1.1856 -0.4021 25 6 8.4834 0.2842 -0.4879 26 6 7.0809 0.7512 -0.5283 27 8 6.8237 1.9060 -0.8075 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6212 1.4027 -0.9313 33 1 1.4889 1.6965 2.5461 34 1 3.0990 1.3601 3.2260 35 1 2.5401 5.8652 4.4511 36 1 4.6120 1.0939 -1.1084 37 1 4.0677 -0.5294 -0.6219 38 1 5.5121 -2.1195 -0.0549 39 1 6.6068 -1.5230 1.2100 40 1 7.3030 -2.1785 -1.6778 41 1 7.8707 -3.0090 -0.2103 42 1 10.2352 -2.6086 -0.5368 43 1 12.1009 -1.0107 -0.3828 44 1 11.6624 1.4069 -0.2930 45 1 9.3484 2.2476 -0.3642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359446453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:45 Heat of formation + Delta-G solvation = -8.138635 kcal Electronic energy + Delta-G solvation = -27943.837360 eV Core-core repulsion = 24120.224149 eV Total energy + Delta-G solvation = -3823.613211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84130 -39.22024 -38.06980 -36.29573 -35.66346 -33.27176 -32.84728 -32.09631 -31.33965 -29.49338 -28.84425 -27.11270 -25.49172 -24.24094 -23.56598 -22.08010 -21.70585 -20.10413 -19.17344 -18.34563 -17.68224 -16.90041 -16.80705 -16.68394 -15.88415 -15.59420 -15.07473 -14.99844 -14.61456 -14.38024 -14.33515 -13.95565 -13.75859 -13.63877 -13.31250 -13.16723 -12.79549 -12.59937 -12.55471 -12.30578 -11.99511 -11.79007 -11.74835 -11.57675 -11.37338 -11.15856 -11.10662 -10.92073 -10.51368 -10.12557 -9.79866 -9.57078 -9.40482 -9.29643 -9.11049 -8.93749 -8.54453 -8.40555 -7.73861 -6.03430 -4.02053 0.76702 1.18228 2.32169 2.76255 2.94724 3.31037 3.31341 3.37283 3.38773 3.76239 3.97318 4.34022 4.43073 4.43433 4.51031 4.78102 4.86286 4.91433 5.01217 5.13731 5.17519 5.17796 5.24533 5.28028 5.32079 5.36600 5.41762 5.46157 5.62461 5.69661 5.77964 5.85548 5.92115 6.11945 6.17823 6.24247 6.27479 6.35469 6.67038 6.71122 6.74104 6.82100 6.96114 7.36042 7.36768 7.65427 8.18911 8.27789 8.51994 8.95055 9.03139 9.56300 11.10102 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.003540 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.056266 B = 7908.291964 C = 9114.417010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.171 4.171 3 C 0.134 3.866 4 N -0.588 5.588 5 C 0.219 3.781 6 C -0.528 4.528 7 H 0.075 0.925 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.096 3.904 17 N -0.591 5.591 18 C 0.117 3.883 19 C -0.098 4.098 20 C -0.053 4.053 21 C -0.127 4.127 22 C -0.096 4.096 23 C -0.132 4.132 24 C -0.055 4.055 25 C -0.124 4.124 26 C 0.565 3.435 27 O -0.521 6.521 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 -19.270 -12.448 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.010 3.990 4 N -0.320 5.320 5 C 0.099 3.901 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.279 3.721 15 O -0.405 6.405 16 C -0.030 4.030 17 N -0.324 5.324 18 C -0.006 4.006 19 C -0.135 4.135 20 C -0.054 4.054 21 C -0.145 4.145 22 C -0.115 4.115 23 C -0.150 4.150 24 C -0.074 4.074 25 C -0.128 4.128 26 C 0.354 3.646 27 O -0.398 6.398 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.842 -18.467 -11.951 23.707 hybrid contribution -0.483 -0.293 0.951 1.106 sum 8.359 -18.761 -10.999 23.298 Atomic orbital electron populations 1.23852 0.95851 1.01889 1.00278 1.23432 0.96446 0.98918 1.00188 1.20640 0.93279 0.95463 0.89644 1.47898 1.10623 1.60458 1.13011 1.19630 0.94750 0.95184 0.80564 1.21356 1.40946 0.91152 1.03184 0.90653 1.24856 0.95351 0.94720 0.98059 1.69907 1.47814 1.06615 1.29193 0.86871 0.79829 0.79666 0.83440 1.19998 1.21061 1.19062 1.20775 0.82243 0.78950 0.90169 1.90673 1.52179 1.55893 1.41717 1.21488 0.82270 1.01735 0.97543 1.47137 1.05279 1.11478 1.68506 1.21356 0.97910 0.81631 0.99708 1.20844 0.92584 0.98002 1.02069 1.20003 0.95037 0.93015 0.97306 1.20883 0.91583 0.99879 1.02200 1.21323 0.99136 0.93330 0.97675 1.21178 0.96576 0.95780 1.01469 1.21251 0.91429 1.00313 0.94379 1.19783 0.93415 0.93559 1.05993 1.18174 0.85042 0.84727 0.76620 1.90816 1.84092 1.17023 1.47823 0.88146 0.88714 0.87783 0.89025 0.90436 0.95221 0.94764 0.92617 0.87149 0.88026 0.89509 0.90942 0.89460 0.88546 0.85442 0.85660 0.85316 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 14.32 29.02 0.42 -1.68 16 2 C -0.17 -2.17 9.74 -36.03 -0.35 -2.52 16 3 C 0.13 2.10 5.65 -5.19 -0.03 2.07 16 4 N -0.59 -12.29 2.44 -176.43 -0.43 -12.72 16 5 C 0.22 5.50 4.23 -5.19 -0.02 5.48 16 6 C -0.53 -15.72 9.94 -34.44 -0.34 -16.07 16 7 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 8 C 0.07 2.17 5.47 -17.82 -0.10 2.08 16 9 N -0.90 -28.51 13.96 55.43 0.77 -27.74 16 10 Si 0.87 22.11 27.47 -169.99 -4.67 17.44 16 11 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 C 0.49 10.34 7.74 -10.98 -0.08 10.26 16 15 O -0.53 -13.52 16.01 5.55 0.09 -13.43 16 16 C 0.10 1.48 4.41 -5.19 -0.02 1.45 16 17 N -0.59 -9.03 2.29 -176.70 -0.40 -9.43 16 18 C 0.12 1.28 6.44 -4.45 -0.03 1.25 16 19 C -0.10 -0.81 6.04 -28.11 -0.17 -0.98 16 20 C -0.05 -0.59 5.68 -104.32 -0.59 -1.18 16 21 C -0.13 -1.15 9.73 -39.68 -0.39 -1.53 16 22 C -0.10 -0.86 10.04 -39.46 -0.40 -1.25 16 23 C -0.13 -1.38 10.04 -39.58 -0.40 -1.78 16 24 C -0.05 -0.75 9.65 -39.27 -0.38 -1.13 16 25 C -0.12 -1.82 5.78 -105.03 -0.61 -2.43 16 26 C 0.57 10.03 7.48 -12.29 -0.09 9.94 16 27 O -0.52 -11.31 16.22 5.31 0.09 -11.22 16 28 H 0.10 1.17 7.84 -52.48 -0.41 0.76 16 29 H 0.09 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.10 1.16 7.83 -52.49 -0.41 0.75 16 31 H 0.09 1.53 7.72 -51.93 -0.40 1.13 16 32 H 0.08 1.04 6.44 -51.93 -0.33 0.71 16 33 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 34 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.11 1.73 6.70 -51.93 -0.35 1.38 16 37 H 0.10 1.11 7.42 -51.93 -0.39 0.72 16 38 H 0.09 0.69 7.74 -51.93 -0.40 0.29 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 42 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.14 1.96 7.85 -52.49 -0.41 1.55 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -39.40 377.97 -8.82 -48.22 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.38 Total: 1.20 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -3.58 Total: 1.98 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.06 Total: -49.89 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.18 Total: -24.65 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.40 -8.82 -48.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359446453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.078 kcal (2) G-P(sol) polarization free energy of solvation -39.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds