Wall clock time and date at job start Tue Mar 31 2020 16:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00031 * 2 1 4 4 N 1.46503 * 109.46866 * 125.00309 * 3 2 1 5 5 C 1.46500 * 120.00037 * 270.00048 * 4 3 2 6 6 C 1.50703 * 109.47089 * 270.00183 * 5 4 3 7 7 H 1.07995 * 120.00095 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00165 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00125 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47116 * 89.99959 * 10 8 6 12 12 H 1.48502 * 109.47133 * 210.00379 * 10 8 6 13 13 H 1.48497 * 109.47116 * 330.00494 * 10 8 6 14 14 C 1.34772 * 119.99990 * 90.00607 * 4 3 2 15 15 O 1.21287 * 120.00039 * 180.02562 * 14 4 3 16 16 C 1.50706 * 120.00180 * 359.97438 * 14 4 3 17 17 N 1.46498 * 109.47027 * 180.02562 * 16 14 4 18 18 C 1.46042 * 119.40986 * 90.00444 * 17 16 14 19 19 C 1.52695 * 111.04589 * 142.27840 * 18 17 16 20 20 C 1.50554 * 109.92403 * 51.16162 * 19 18 17 21 21 C 1.37767 * 120.95293 * 146.00296 * 20 19 18 22 22 C 1.38431 * 119.93308 * 179.97438 * 21 20 19 23 23 C 1.38385 * 120.44519 * 359.97438 * 22 21 20 24 24 C 1.38088 * 120.18023 * 0.02562 * 23 22 21 25 25 C 1.39236 * 119.56756 * 0.02562 * 24 23 22 26 26 C 1.34824 * 119.41437 * 270.01954 * 17 16 14 27 27 O 1.21560 * 120.44713 * 2.71687 * 26 17 16 28 28 H 1.08008 * 119.99964 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99802 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00136 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47523 * 5.00563 * 3 2 1 32 32 H 1.08997 * 109.47572 * 245.00176 * 3 2 1 33 33 H 1.08993 * 109.47461 * 30.00286 * 5 4 3 34 34 H 1.09001 * 109.47389 * 150.00350 * 5 4 3 35 35 H 0.96995 * 119.99993 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.46484 * 60.00520 * 16 14 4 37 37 H 1.08996 * 109.46772 * 300.00689 * 16 14 4 38 38 H 1.08997 * 109.16434 * 21.87121 * 18 17 16 39 39 H 1.08998 * 109.16055 * 262.67719 * 18 17 16 40 40 H 1.09002 * 109.39362 * 291.02188 * 19 18 17 41 41 H 1.09004 * 109.32418 * 171.25325 * 19 18 17 42 42 H 1.08004 * 120.03433 * 359.97438 * 21 20 19 43 43 H 1.07997 * 119.78167 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.90792 * 179.73189 * 23 22 21 45 45 H 1.08001 * 120.22127 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3040 3.8368 1.6370 8 6 2.5195 4.0663 3.6088 9 7 2.7690 5.3567 3.6576 10 14 1.7250 3.2129 5.0682 11 1 2.7810 2.7216 5.9894 12 1 0.8489 4.1731 5.7864 13 1 0.9133 2.0654 4.5889 14 6 4.2497 0.8662 0.9823 15 8 5.0197 0.8878 1.9191 16 6 4.6969 0.3175 -0.3482 17 7 6.0912 -0.1216 -0.2515 18 6 6.3844 -1.4967 0.1433 19 6 7.5795 -2.0468 -0.6317 20 6 8.7371 -1.0888 -0.5373 21 6 10.0355 -1.5478 -0.4993 22 6 11.0840 -0.6481 -0.4129 23 6 10.8380 0.7128 -0.3648 24 6 9.5411 1.1856 -0.4021 25 6 8.4834 0.2842 -0.4879 26 6 7.0809 0.7512 -0.5283 27 8 6.8237 1.9060 -0.8075 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6212 1.4027 -0.9313 33 1 1.4889 1.6965 2.5461 34 1 3.0990 1.3601 3.2260 35 1 2.5401 5.8652 4.4511 36 1 4.6120 1.0939 -1.1084 37 1 4.0677 -0.5294 -0.6219 38 1 5.5121 -2.1195 -0.0549 39 1 6.6068 -1.5230 1.2100 40 1 7.3030 -2.1785 -1.6778 41 1 7.8707 -3.0090 -0.2103 42 1 10.2352 -2.6086 -0.5368 43 1 12.1009 -1.0107 -0.3828 44 1 11.6624 1.4069 -0.2930 45 1 9.3484 2.2476 -0.3642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359446453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:44 Heat of formation + Delta-G solvation = -35.280473 kcal Electronic energy + Delta-G solvation = -27945.014318 eV Core-core repulsion = 24120.224149 eV Total energy + Delta-G solvation = -3824.790169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97388 -40.66656 -39.23812 -37.53326 -37.11087 -35.12670 -33.89362 -33.77044 -32.26242 -30.90791 -30.08417 -28.56665 -26.91257 -25.11493 -24.92318 -23.72829 -22.60712 -21.25071 -20.37358 -19.63094 -19.14723 -18.71425 -18.27168 -17.96254 -17.08183 -16.81528 -16.48073 -16.14629 -15.92983 -15.74517 -15.43923 -15.37529 -14.90004 -14.74794 -14.61999 -14.47610 -14.24032 -13.95645 -13.66289 -13.50033 -13.39512 -13.12025 -13.03811 -12.83347 -12.73640 -12.53206 -12.28775 -12.18260 -11.96122 -11.95492 -11.78986 -11.10708 -11.00543 -10.88109 -10.31459 -10.06689 -9.85269 -9.59685 -9.49221 -8.38278 -6.44654 -0.16467 0.36539 1.26162 1.31621 1.33000 1.41788 1.56711 1.70900 1.88684 2.26764 2.45519 2.84114 2.95465 3.41447 3.59557 3.64816 3.75784 3.98115 4.03941 4.12594 4.16157 4.16640 4.28451 4.30660 4.41290 4.43682 4.47156 4.62334 4.67447 4.72447 4.83575 4.88210 4.92554 4.98995 5.09111 5.12029 5.28531 5.37710 5.41418 5.42801 5.47332 5.49549 5.72632 5.93683 5.95670 6.19155 6.21046 6.56992 6.59971 6.97728 7.15515 7.33892 8.79581 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.003540 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.056266 B = 7908.291964 C = 9114.417010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.180 4.180 3 C 0.127 3.873 4 N -0.594 5.594 5 C 0.231 3.769 6 C -0.541 4.541 7 H 0.018 0.982 8 C 0.008 3.992 9 N -0.948 5.948 10 Si 0.954 3.046 11 H -0.277 1.277 12 H -0.271 1.271 13 H -0.234 1.234 14 C 0.483 3.517 15 O -0.588 6.588 16 C 0.105 3.895 17 N -0.590 5.590 18 C 0.106 3.894 19 C -0.090 4.090 20 C -0.054 4.054 21 C -0.119 4.119 22 C -0.085 4.085 23 C -0.137 4.137 24 C -0.087 4.087 25 C -0.164 4.164 26 C 0.550 3.450 27 O -0.587 6.587 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.017 0.983 35 H 0.269 0.731 36 H 0.103 0.897 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.172 0.828 43 H 0.165 0.835 44 H 0.148 0.852 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.284 -24.903 -12.869 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.199 4.199 3 C 0.006 3.994 4 N -0.325 5.325 5 C 0.109 3.891 6 C -0.580 4.580 7 H 0.036 0.964 8 C -0.190 4.190 9 N -0.588 5.588 10 Si 0.776 3.224 11 H -0.202 1.202 12 H -0.196 1.196 13 H -0.156 1.156 14 C 0.271 3.729 15 O -0.468 6.468 16 C -0.021 4.021 17 N -0.321 5.321 18 C -0.015 4.015 19 C -0.126 4.126 20 C -0.055 4.055 21 C -0.137 4.137 22 C -0.103 4.103 23 C -0.154 4.154 24 C -0.107 4.107 25 C -0.167 4.167 26 C 0.341 3.659 27 O -0.468 6.468 28 H 0.112 0.888 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.178 0.822 38 H 0.145 0.855 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.156 0.844 42 H 0.189 0.811 43 H 0.182 0.818 44 H 0.166 0.834 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.500 -24.162 -12.425 28.468 hybrid contribution -0.310 1.534 1.018 1.867 sum 8.190 -22.627 -11.407 26.631 Atomic orbital electron populations 1.24090 0.95532 1.02989 0.97860 1.23267 0.96681 0.97712 1.02225 1.20897 0.92671 0.97289 0.88587 1.48001 1.11829 1.59708 1.12962 1.19240 0.95470 0.91689 0.82701 1.21594 1.40681 0.93915 1.01773 0.96371 1.25960 0.95906 0.95405 1.01738 1.70081 1.49356 1.08731 1.30595 0.85634 0.79001 0.79459 0.78340 1.20237 1.19615 1.15646 1.21838 0.81469 0.78023 0.91588 1.90632 1.53621 1.58387 1.44147 1.21558 0.83506 1.03525 0.93500 1.47398 1.04594 1.12936 1.67145 1.21753 1.01078 0.79688 0.99011 1.20962 0.90096 0.98475 1.03097 1.20402 0.97386 0.91575 0.96149 1.21405 0.90264 1.02046 0.99958 1.21836 1.01258 0.92216 0.94987 1.21429 0.95354 0.97583 1.01079 1.21253 0.93388 0.99115 0.96907 1.19809 0.91514 0.95834 1.09502 1.18938 0.87026 0.84275 0.75626 1.90756 1.85248 1.19723 1.51077 0.88790 0.85875 0.85270 0.90794 0.88450 0.93064 0.96478 0.92205 0.87912 0.82246 0.85546 0.93087 0.87489 0.84422 0.81077 0.81752 0.83447 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 14.32 67.78 0.97 -2.35 16 2 C -0.18 -4.05 9.74 25.65 0.25 -3.80 16 3 C 0.13 3.98 5.65 85.63 0.48 4.47 16 4 N -0.59 -25.43 2.44 -830.49 -2.03 -27.45 16 5 C 0.23 11.88 4.23 85.63 0.36 12.24 16 6 C -0.54 -34.16 9.94 25.60 0.25 -33.91 16 7 H 0.02 1.30 8.06 -2.91 -0.02 1.28 16 8 C 0.01 0.47 5.47 84.65 0.46 0.93 16 9 N -0.95 -63.25 13.96 21.45 0.30 -62.95 16 10 Si 0.95 46.35 27.47 68.60 1.88 48.24 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.23 -10.06 6.54 99.48 0.65 -9.41 16 14 C 0.48 20.96 7.74 87.66 0.68 21.64 16 15 O -0.59 -31.81 16.01 -3.05 -0.05 -31.86 16 16 C 0.11 3.23 4.41 85.64 0.38 3.60 16 17 N -0.59 -18.18 2.29 -831.21 -1.90 -20.09 16 18 C 0.11 2.08 6.44 86.36 0.56 2.63 16 19 C -0.09 -1.14 6.04 29.70 0.18 -0.96 16 20 C -0.05 -1.09 5.68 -19.67 -0.11 -1.21 16 21 C -0.12 -1.65 9.73 22.20 0.22 -1.44 16 22 C -0.09 -1.23 10.04 22.35 0.22 -1.01 16 23 C -0.14 -2.82 10.04 22.27 0.22 -2.60 16 24 C -0.09 -2.63 9.65 22.47 0.22 -2.41 16 25 C -0.16 -5.04 5.78 -20.13 -0.12 -5.15 16 26 C 0.55 21.04 7.48 86.79 0.65 21.69 16 27 O -0.59 -28.42 16.22 -3.91 -0.06 -28.48 16 28 H 0.09 1.98 7.84 -2.91 -0.02 1.96 16 29 H 0.12 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.13 2.28 7.83 -2.91 -0.02 2.26 16 31 H 0.07 2.54 7.72 -2.38 -0.02 2.52 16 32 H 0.10 2.59 6.44 -2.39 -0.02 2.58 16 33 H 0.05 2.40 7.13 -2.39 -0.02 2.38 16 34 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 35 H 0.27 16.56 8.31 -92.71 -0.77 15.79 16 36 H 0.10 3.35 6.70 -2.39 -0.02 3.33 16 37 H 0.16 2.93 7.42 -2.39 -0.02 2.91 16 38 H 0.13 1.45 7.74 -2.39 -0.02 1.43 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.14 0.69 8.08 -2.39 -0.02 0.67 16 42 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.10 3.62 7.85 -2.91 -0.02 3.60 16 Total: -1.00 -99.24 377.97 4.95 -94.29 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.93 Total: 15.93 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 5.88 Total: 12.38 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.63 Total: -110.49 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -0.11 Total: -60.34 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.24 kcal Total: -99.24 4.95 -94.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359446453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.005 kcal (2) G-P(sol) polarization free energy of solvation -99.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds