Wall clock time and date at job start Tue Mar 31 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50705 * 119.99962 * 2 1 4 4 C 1.31006 * 120.00185 * 179.97438 * 2 1 3 5 5 C 1.50698 * 119.99830 * 180.27504 * 4 2 1 6 6 O 1.42905 * 109.46767 * 134.72347 * 5 4 2 7 7 C 1.35903 * 117.00065 * 179.97438 * 6 5 4 8 8 C 1.38759 * 120.05092 * 359.72910 * 7 6 5 9 9 C 1.38130 * 119.93793 * 179.69559 * 8 7 6 10 10 C 1.38287 * 120.05573 * 0.60141 * 9 8 7 11 11 C 1.38252 * 120.11250 * 359.67493 * 10 9 8 12 12 C 1.50695 * 119.96857 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47056 * 269.97447 * 12 11 10 14 14 O 1.21290 * 120.00126 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99939 * 179.97438 * 13 12 11 16 16 C 1.37090 * 120.00195 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99938 * 18.11612 * 16 15 13 18 18 C 1.38948 * 120.00357 * 198.12104 * 16 15 13 19 19 N 1.31418 * 119.99957 * 18.73391 * 18 16 15 20 20 Si 1.86802 * 120.00360 * 198.72973 * 18 16 15 21 21 H 1.48501 * 109.46911 * 85.58820 * 20 18 16 22 22 H 1.48500 * 109.47241 * 205.58799 * 20 18 16 23 23 H 1.48501 * 109.46861 * 325.59360 * 20 18 16 24 24 C 1.46498 * 119.99692 * 0.02562 * 15 13 12 25 25 C 1.47195 * 109.47743 * 84.20190 * 24 15 13 26 26 N 9.51121 * 135.65608 * 114.62180 * 4 1 2 27 27 C 1.38166 * 120.05211 * 0.02562 * 11 10 9 28 28 H 1.08994 * 109.47073 * 269.99766 * 1 2 3 29 29 H 1.09001 * 109.46973 * 30.00325 * 1 2 3 30 30 H 1.09000 * 109.46601 * 149.99645 * 1 2 3 31 31 H 1.08999 * 109.47235 * 239.99378 * 3 2 1 32 32 H 1.08997 * 109.47175 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.46786 * 119.99912 * 3 2 1 34 34 H 1.07992 * 119.99717 * 0.02562 * 4 2 1 35 35 H 1.08997 * 109.47255 * 254.72153 * 5 4 2 36 36 H 1.08997 * 109.47334 * 14.73280 * 5 4 2 37 37 H 1.07996 * 120.03116 * 359.97201 * 8 7 6 38 38 H 1.08002 * 119.97200 * 180.29276 * 9 8 7 39 39 H 1.07996 * 119.94379 * 179.69624 * 10 9 8 40 40 H 1.09001 * 109.47377 * 29.98087 * 12 11 10 41 41 H 1.09006 * 109.46877 * 149.98017 * 12 11 10 42 42 H 0.96990 * 120.00059 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.46918 * 204.20166 * 24 15 13 44 44 H 1.09002 * 109.47173 * 324.19260 * 24 15 13 45 45 H 1.08003 * 120.02518 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 3.6691 -1.1344 0.0068 6 8 4.1414 -2.0844 0.9642 7 6 5.4882 -2.2103 1.0958 8 6 6.3377 -1.4394 0.3152 9 6 7.7061 -1.5647 0.4552 10 6 8.2297 -2.4665 1.3636 11 6 7.3853 -3.2398 2.1384 12 6 7.9593 -4.2210 3.1277 13 6 8.1538 -5.5559 2.4560 14 8 7.8561 -5.6966 1.2886 15 7 8.6596 -6.5933 3.1521 16 6 8.8370 -7.8076 2.5409 17 1 8.8571 -7.8718 1.4630 18 6 8.9911 -8.9557 3.3082 19 7 8.6098 -8.9616 4.5659 20 14 9.7399 -10.4910 2.5521 21 1 11.2201 -10.4170 2.6450 22 1 9.2572 -11.6894 3.2844 23 1 9.3376 -10.5870 1.1258 24 6 9.0197 -6.4233 4.5619 25 6 7.8231 -6.6056 5.3996 26 7 6.8983 -6.7450 6.0466 27 6 6.0158 -3.1137 2.0064 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3632 -0.8900 -0.5139 31 1 2.8873 1.3629 -0.8899 32 1 1.5522 2.1336 0.0005 33 1 2.8872 1.3628 0.8900 34 1 1.6221 -2.0697 0.0005 35 1 4.0365 -1.4033 -0.9835 36 1 4.0313 -0.1411 0.2716 37 1 5.9293 -0.7388 -0.3981 38 1 8.3678 -0.9615 -0.1487 39 1 9.2999 -2.5665 1.4682 40 1 8.9194 -3.8529 3.4893 41 1 7.2736 -4.3335 3.9675 42 1 8.7177 -9.7629 5.1016 43 1 9.7716 -7.1631 4.8366 44 1 9.4220 -5.4220 4.7160 45 1 5.3566 -3.7178 2.6123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415189770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:29 Heat of formation + Delta-G solvation = 0.978324 kcal Electronic energy + Delta-G solvation = -26626.415442 eV Core-core repulsion = 22803.197572 eV Total energy + Delta-G solvation = -3823.217870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.10095 -38.93973 -37.64970 -36.40046 -35.68914 -34.30599 -32.35549 -31.64934 -30.66591 -28.97498 -28.08284 -27.76462 -27.18238 -24.81853 -24.22741 -22.33468 -21.19292 -19.24228 -18.36826 -17.93028 -17.37202 -16.50081 -16.30656 -16.17065 -15.91362 -15.72206 -14.71042 -14.52207 -14.46699 -14.28618 -14.20626 -13.90475 -13.47928 -13.04427 -12.95778 -12.88147 -12.78242 -12.66413 -12.26026 -12.19636 -12.04219 -11.90617 -11.69559 -11.46873 -11.30949 -11.26917 -11.17322 -11.10822 -10.85333 -10.58915 -10.53300 -10.39395 -10.28069 -9.25095 -9.11604 -8.77366 -8.40048 -8.03049 -7.94067 -6.47938 -3.99470 1.57539 1.70385 1.73077 3.11758 3.23036 3.26822 3.37483 3.56630 3.80305 3.98948 3.99580 4.15875 4.48789 4.57887 4.85051 4.90142 4.91921 4.94646 5.00101 5.06005 5.13030 5.17758 5.22918 5.27995 5.33139 5.40094 5.48860 5.53744 5.58675 5.60008 5.67307 5.72917 5.75827 5.90888 6.05944 6.10744 6.28725 6.31387 6.50412 6.51574 6.55347 6.64469 6.89942 7.01093 7.48437 7.59528 7.91594 8.29996 8.75510 9.01990 9.20734 9.75283 10.57928 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.002407 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.837244 B =11630.045081 C =11896.276023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 C -0.126 4.126 4 C -0.165 4.165 5 C 0.089 3.911 6 O -0.313 6.313 7 C 0.127 3.873 8 C -0.217 4.217 9 C -0.082 4.082 10 C -0.142 4.142 11 C -0.006 4.006 12 C -0.104 4.104 13 C 0.461 3.539 14 O -0.562 6.562 15 N -0.446 5.446 16 C -0.309 4.309 17 H 0.108 0.892 18 C 0.030 3.970 19 N -0.882 5.882 20 Si 0.929 3.071 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.270 1.270 24 C 0.221 3.779 25 C 0.246 3.754 26 N -0.474 5.474 27 C -0.136 4.136 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.273 0.727 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 18.902 -5.675 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.118 4.118 3 C -0.182 4.182 4 C -0.183 4.183 5 C 0.015 3.985 6 O -0.227 6.227 7 C 0.083 3.917 8 C -0.236 4.236 9 C -0.100 4.100 10 C -0.160 4.160 11 C -0.007 4.007 12 C -0.145 4.145 13 C 0.249 3.751 14 O -0.444 6.444 15 N -0.167 5.167 16 C -0.436 4.436 17 H 0.126 0.874 18 C -0.173 4.173 19 N -0.521 5.521 20 Si 0.756 3.244 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.195 1.195 24 C 0.093 3.907 25 C -0.072 4.072 26 N -0.155 5.155 27 C -0.154 4.154 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.148 0.852 44 H 0.101 0.899 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.179 18.366 -5.078 20.032 hybrid contribution 0.683 -0.947 -0.573 1.301 sum -5.495 17.420 -5.651 19.120 Atomic orbital electron populations 1.20861 0.91542 1.02568 1.02393 1.21629 0.96110 0.94766 0.99271 1.20935 1.00130 0.94854 1.02288 1.22372 0.93796 0.98478 1.03618 1.21738 0.92505 0.92089 0.92212 1.86089 1.19454 1.58965 1.58170 1.18866 0.81817 0.95571 0.95496 1.21080 0.94479 1.04322 1.03742 1.20800 0.94153 0.97734 0.97363 1.20877 0.99632 0.97724 0.97776 1.19153 0.92146 0.93910 0.95450 1.20755 1.02305 0.93657 0.97754 1.19936 0.81700 0.85472 0.87977 1.90580 1.52871 1.84147 1.16788 1.43640 1.55471 1.10301 1.07299 1.19725 1.47856 0.82372 0.93678 0.87449 1.25283 0.96999 0.99201 0.95835 1.69819 1.43777 1.30387 1.08163 0.85875 0.79157 0.80085 0.79264 1.20115 1.21132 1.19451 1.18775 0.90069 1.01751 0.80082 1.29396 0.94667 0.90203 0.92955 1.80956 1.11285 1.11990 1.11223 1.20241 0.94791 0.99721 1.00692 0.91082 0.91747 0.91620 0.91384 0.91725 0.91113 0.86210 0.91312 0.91390 0.86148 0.86115 0.85992 0.88635 0.89168 0.91636 0.85225 0.89919 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.97 36.01 0.36 -0.44 16 2 C -0.12 -1.00 6.05 -101.06 -0.61 -1.61 16 3 C -0.13 -0.87 8.58 36.01 0.31 -0.56 16 4 C -0.16 -1.69 9.48 -36.03 -0.34 -2.03 16 5 C 0.09 1.01 4.87 36.00 0.18 1.18 16 6 O -0.31 -4.79 10.12 -19.44 -0.20 -4.98 16 7 C 0.13 2.05 6.69 -39.22 -0.26 1.79 16 8 C -0.22 -3.01 9.04 -39.43 -0.36 -3.37 16 9 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 16 10 C -0.14 -2.16 9.70 -39.56 -0.38 -2.54 16 11 C -0.01 -0.10 4.37 -104.65 -0.46 -0.56 16 12 C -0.10 -1.80 4.43 -29.04 -0.13 -1.93 16 13 C 0.46 10.37 7.56 -10.98 -0.08 10.28 16 14 O -0.56 -14.83 15.69 5.55 0.09 -14.74 16 15 N -0.45 -10.29 2.60 -117.93 -0.31 -10.60 16 16 C -0.31 -7.94 9.33 -14.94 -0.14 -8.08 16 17 H 0.11 2.93 7.38 -52.48 -0.39 2.54 16 18 C 0.03 0.73 4.94 -17.47 -0.09 0.65 16 19 N -0.88 -22.17 9.33 55.50 0.52 -21.66 16 20 Si 0.93 19.75 29.59 -169.99 -5.03 14.72 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.22 4.29 4.91 -6.83 -0.03 4.25 16 25 C 0.25 5.38 12.96 -20.72 -0.27 5.12 16 26 N -0.47 -11.25 18.55 42.20 0.78 -10.47 16 27 C -0.14 -2.41 9.64 -39.44 -0.38 -2.79 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.35 8.05 -51.93 -0.42 -0.06 16 30 H 0.06 0.43 8.06 -51.93 -0.42 0.01 16 31 H 0.07 0.42 8.02 -51.93 -0.42 0.01 16 32 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 33 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 34 H 0.12 1.26 8.04 -52.49 -0.42 0.84 16 35 H 0.07 0.73 7.65 -51.93 -0.40 0.33 16 36 H 0.07 0.66 5.51 -51.93 -0.29 0.38 16 37 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.10 1.30 7.36 -51.93 -0.38 0.92 16 41 H 0.09 1.52 7.45 -51.93 -0.39 1.14 16 42 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 43 H 0.13 2.59 6.40 -51.93 -0.33 2.25 16 44 H 0.08 1.19 6.68 -51.93 -0.35 0.84 16 45 H 0.13 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -32.38 382.68 -7.62 -39.99 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.15 Total: 4.11 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.09 Total: -2.15 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.99 Total: -42.72 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.11 Total: -19.73 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.38 -7.62 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415189770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.972 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds