Wall clock time and date at job start Tue Mar 31 2020 15:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 H 1.09003 * 109.69208 * 305.34119 * 3 2 1 5 5 C 1.53235 * 109.58324 * 185.00442 * 3 2 1 6 6 N 1.46377 * 109.49016 * 182.55370 * 5 3 2 7 7 C 1.34782 * 119.64127 * 245.08680 * 6 5 3 8 8 O 1.21338 * 120.00513 * 7.38902 * 7 6 5 9 9 C 1.49457 * 119.99457 * 187.39258 * 7 6 5 10 10 O 1.21349 * 119.99878 * 7.34423 * 9 7 6 11 11 N 1.34772 * 119.99656 * 187.34894 * 9 7 6 12 12 C 1.46501 * 120.00044 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47406 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46801 * 59.99966 * 13 12 11 15 15 C 1.53002 * 109.47162 * 299.99854 * 13 12 11 16 16 C 1.50699 * 109.47153 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99795 * 4.62726 * 16 13 12 18 18 C 1.37877 * 119.99992 * 184.63231 * 16 13 12 19 19 N 1.31506 * 120.00240 * 151.07835 * 18 16 13 20 20 Si 1.86801 * 119.99686 * 331.07182 * 18 16 13 21 21 H 1.48498 * 109.47202 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47456 * 300.00103 * 20 18 16 23 23 H 1.48500 * 109.47105 * 60.00546 * 20 18 16 24 24 C 1.46374 * 120.70988 * 65.35295 * 6 5 3 25 25 C 1.53751 * 109.20760 * 294.64148 * 24 6 5 26 26 S 1.81733 * 109.58235 * 65.68679 * 3 2 1 27 27 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46759 * 300.00033 * 1 2 3 29 29 H 1.09003 * 109.47075 * 59.99937 * 1 2 3 30 30 H 1.09008 * 109.47035 * 240.00003 * 2 1 3 31 31 H 1.08995 * 109.47252 * 120.00344 * 2 1 3 32 32 H 1.09002 * 109.47412 * 62.54341 * 5 3 2 33 33 H 1.09008 * 109.46326 * 302.55129 * 5 3 2 34 34 H 0.97001 * 120.00638 * 359.97438 * 11 9 7 35 35 H 1.08999 * 109.47336 * 59.99419 * 12 11 9 36 36 H 1.09005 * 109.46675 * 299.99855 * 12 11 9 37 37 H 1.09000 * 109.46702 * 174.13126 * 14 13 12 38 38 H 1.09008 * 109.47066 * 294.12337 * 14 13 12 39 39 H 1.08995 * 109.47569 * 54.12769 * 14 13 12 40 40 H 1.09002 * 109.46926 * 303.42601 * 15 13 12 41 41 H 1.09005 * 109.46911 * 63.42036 * 15 13 12 42 42 H 1.08991 * 109.47180 * 183.41894 * 15 13 12 43 43 H 0.96995 * 120.00126 * 354.97965 * 19 18 16 44 44 H 1.08995 * 109.46907 * 54.64903 * 24 6 5 45 45 H 1.09003 * 109.46908 * 174.63878 * 24 6 5 46 46 H 1.08999 * 109.70114 * 297.99413 * 25 24 6 47 47 H 1.09003 * 109.62699 * 177.61886 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6028 1.9866 -0.8372 5 6 3.5672 1.4473 -0.1259 6 7 4.0580 2.8249 -0.0645 7 6 4.6573 3.3678 -1.1429 8 8 4.6691 2.7672 -2.1971 9 6 5.3074 4.7096 -1.0400 10 8 5.4137 5.2510 0.0409 11 7 5.7756 5.3182 -2.1476 12 6 6.4134 6.6332 -2.0467 13 6 6.8520 7.0954 -3.4377 14 6 5.6293 7.1904 -4.3526 15 6 7.8472 6.0892 -4.0192 16 6 7.5075 8.4484 -3.3340 17 1 7.6693 8.8972 -2.3651 18 6 7.9006 9.1133 -4.4761 19 7 7.9306 10.4279 -4.4942 20 14 8.3908 8.1468 -5.9976 21 1 8.7701 9.0885 -7.0813 22 1 9.5463 7.2709 -5.6767 23 1 7.2462 7.3127 -6.4442 24 6 3.9101 3.6174 1.1572 25 6 2.4156 3.8593 1.4254 26 16 1.5785 2.2517 1.5604 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8547 1.0013 -1.0781 33 1 4.0009 0.8704 0.6911 34 1 5.6909 4.8853 -3.0115 35 1 7.2846 6.5655 -1.3952 36 1 5.7045 7.3500 -1.6320 37 1 5.9249 7.6181 -5.3106 38 1 5.2162 6.1942 -4.5115 39 1 4.8761 7.8263 -3.8876 40 1 8.6899 5.9762 -3.3372 41 1 7.3547 5.1258 -4.1510 42 1 8.2059 6.4488 -4.9836 43 1 7.6075 10.9310 -3.7305 44 1 4.3495 3.0775 1.9959 45 1 4.4190 4.5734 1.0340 46 1 1.9822 4.4289 0.6033 47 1 2.2956 4.4129 2.3567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422487942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:34 Heat of formation + Delta-G solvation = -49.138535 kcal Electronic energy + Delta-G solvation = -26736.838052 eV Core-core repulsion = 23046.890903 eV Total energy + Delta-G solvation = -3689.947148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05474 -38.86948 -37.29428 -36.78173 -35.15792 -33.53849 -31.58757 -31.07879 -29.74347 -26.91864 -26.41722 -25.09096 -24.42990 -23.91015 -22.16593 -21.80409 -20.28438 -19.24486 -17.95624 -17.35343 -16.78393 -16.65836 -16.18890 -15.75986 -15.37437 -15.27549 -14.90642 -14.69877 -14.42778 -14.13563 -13.99069 -13.43318 -13.39467 -13.01324 -12.93986 -12.77519 -12.71540 -12.28332 -12.11131 -12.04811 -11.90281 -11.73017 -11.54765 -11.47742 -11.42406 -10.95878 -10.69295 -10.28713 -10.18499 -10.08058 -10.01418 -9.30021 -9.16900 -9.06144 -8.96525 -8.87057 -8.20432 -7.92066 -6.61251 -4.17569 1.32318 1.39276 2.20337 2.23070 3.11796 3.29987 3.35937 3.44600 3.58151 4.18847 4.32591 4.40256 4.42440 4.63410 4.67098 4.80380 4.88582 5.04811 5.07694 5.11479 5.22794 5.32427 5.39907 5.52633 5.57943 5.63468 5.71392 5.74460 5.88830 5.91241 5.98747 6.02212 6.28492 6.33076 6.43355 6.51279 6.58830 6.64127 6.77260 6.84395 7.14216 7.30575 7.35527 7.67371 7.96064 8.10598 8.26838 8.77404 9.46052 10.75880 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026518 B = 0.002646 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.633185 B =10578.500146 C =11042.649976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.064 4.064 4 H 0.091 0.909 5 C 0.108 3.892 6 N -0.589 5.589 7 C 0.509 3.491 8 O -0.517 6.517 9 C 0.501 3.499 10 O -0.517 6.517 11 N -0.678 5.678 12 C 0.136 3.864 13 C 0.035 3.965 14 C -0.144 4.144 15 C -0.152 4.152 16 C -0.611 4.611 17 H 0.062 0.938 18 C 0.046 3.954 19 N -0.885 5.885 20 Si 1.049 2.951 21 H -0.299 1.299 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.041 3.959 25 C -0.097 4.097 26 S -0.262 6.262 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.029 0.971 42 H 0.044 0.956 43 H 0.273 0.727 44 H 0.080 0.920 45 H 0.178 0.822 46 H 0.084 0.916 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 -19.002 9.670 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.194 4.194 4 H 0.110 0.890 5 C -0.016 4.016 6 N -0.322 5.322 7 C 0.292 3.708 8 O -0.392 6.392 9 C 0.282 3.718 10 O -0.397 6.397 11 N -0.328 5.328 12 C 0.015 3.985 13 C 0.034 3.966 14 C -0.202 4.202 15 C -0.209 4.209 16 C -0.648 4.648 17 H 0.080 0.920 18 C -0.162 4.162 19 N -0.516 5.516 20 Si 0.882 3.118 21 H -0.227 1.227 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.081 4.081 25 C -0.246 4.246 26 S -0.035 6.035 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.193 0.807 46 H 0.103 0.897 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.864 -19.093 9.147 24.269 hybrid contribution -0.016 0.003 0.322 0.323 sum -11.880 -19.090 9.470 24.397 Atomic orbital electron populations 1.21800 0.94700 1.01902 1.02684 1.21339 0.96989 0.92575 1.03194 1.23661 0.98127 1.00122 0.97476 0.89014 1.21856 0.92034 0.82690 1.04994 1.47795 1.56942 1.13881 1.13625 1.20411 0.79380 0.87245 0.83804 1.90746 1.58128 1.62835 1.27452 1.19969 0.80636 0.85882 0.85356 1.90195 1.57471 1.65889 1.26174 1.46294 1.55870 1.21131 1.09501 1.21839 0.96517 0.79756 1.00403 1.18676 0.92611 0.95892 0.89461 1.22254 0.98690 0.98192 1.01039 1.22388 1.00326 0.97429 1.00775 1.21579 1.46303 1.01498 0.95416 0.92015 1.25661 0.93593 0.95881 1.01105 1.70843 1.42092 1.06717 1.31899 0.84204 0.77056 0.74346 0.76191 1.22703 1.21469 1.20441 1.23670 0.95447 1.02886 0.86111 1.24027 0.98014 0.96110 1.06461 1.86810 1.69892 1.18539 1.28245 0.92335 0.91667 0.92538 0.90286 0.90711 0.87709 0.89542 0.75154 0.91313 0.91222 0.92329 0.95870 0.93476 0.92868 0.95230 0.93724 0.91735 0.90134 0.80681 0.89741 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.75 37.16 0.36 -0.70 16 2 C -0.10 -0.72 5.41 -26.73 -0.14 -0.86 16 3 C -0.06 -0.58 2.75 -26.61 -0.07 -0.65 16 4 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 5 C 0.11 1.05 5.49 -3.99 -0.02 1.03 16 6 N -0.59 -6.89 2.78 -173.78 -0.48 -7.37 16 7 C 0.51 7.20 7.70 -11.58 -0.09 7.11 16 8 O -0.52 -8.13 15.83 5.51 0.09 -8.04 16 9 C 0.50 7.75 7.76 -11.58 -0.09 7.66 16 10 O -0.52 -8.43 13.05 5.50 0.07 -8.36 16 11 N -0.68 -11.07 5.01 -60.73 -0.30 -11.37 16 12 C 0.14 2.59 4.50 -4.04 -0.02 2.57 16 13 C 0.04 0.75 0.50 -155.66 -0.08 0.67 16 14 C -0.14 -2.94 7.90 37.16 0.29 -2.65 16 15 C -0.15 -3.06 7.70 37.16 0.29 -2.77 16 16 C -0.61 -15.83 8.42 -34.44 -0.29 -16.12 16 17 H 0.06 1.73 7.99 -52.49 -0.42 1.31 16 18 C 0.05 1.24 5.07 -17.82 -0.09 1.15 16 19 N -0.88 -25.75 13.69 55.43 0.76 -24.99 16 20 Si 1.05 24.43 23.47 -169.99 -3.99 20.44 16 21 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.36 6.73 56.52 0.38 -5.98 16 23 H -0.28 -5.92 5.78 56.52 0.33 -5.60 16 24 C 0.04 0.44 6.07 -3.72 -0.02 0.42 16 25 C -0.10 -0.94 6.68 37.55 0.25 -0.69 16 26 S -0.26 -2.56 20.52 -107.50 -2.21 -4.76 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 1.07 6.93 -51.93 -0.36 0.71 16 33 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.41 6.48 5.72 -40.82 -0.23 6.25 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 1.27 4.53 -51.93 -0.24 1.04 16 38 H 0.02 0.40 7.04 -51.92 -0.37 0.03 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.51 6.96 -51.93 -0.36 0.14 16 42 H 0.04 0.94 2.21 -51.93 -0.11 0.83 16 43 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.18 2.21 3.65 -57.39 -0.21 2.00 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -28.23 366.46 -7.68 -35.91 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.42 Total: 6.86 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 0.27 Total: -3.84 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.03 Total: -43.73 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.16 Total: -16.40 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -3.99 Total: 20.44 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.21 Total: -4.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.23 -7.68 -35.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422487942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.226 kcal (2) G-P(sol) polarization free energy of solvation -28.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds