Wall clock time and date at job start Tue Mar 31 2020 15:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 H 1.09003 * 109.69208 * 305.34119 * 3 2 1 5 5 C 1.53235 * 109.58324 * 185.00442 * 3 2 1 6 6 N 1.46377 * 109.49016 * 182.55370 * 5 3 2 7 7 C 1.34782 * 119.64127 * 245.08680 * 6 5 3 8 8 O 1.21338 * 120.00513 * 7.38902 * 7 6 5 9 9 C 1.49457 * 119.99457 * 187.39258 * 7 6 5 10 10 O 1.21349 * 119.99878 * 7.34423 * 9 7 6 11 11 N 1.34772 * 119.99656 * 187.34894 * 9 7 6 12 12 C 1.46501 * 120.00044 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47406 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46801 * 59.99966 * 13 12 11 15 15 C 1.53002 * 109.47162 * 299.99854 * 13 12 11 16 16 C 1.50699 * 109.47153 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99795 * 4.62726 * 16 13 12 18 18 C 1.37877 * 119.99992 * 184.63231 * 16 13 12 19 19 N 1.31506 * 120.00240 * 151.07835 * 18 16 13 20 20 Si 1.86801 * 119.99686 * 331.07182 * 18 16 13 21 21 H 1.48498 * 109.47202 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47456 * 300.00103 * 20 18 16 23 23 H 1.48500 * 109.47105 * 60.00546 * 20 18 16 24 24 C 1.46374 * 120.70988 * 65.35295 * 6 5 3 25 25 C 1.53751 * 109.20760 * 294.64148 * 24 6 5 26 26 S 1.81733 * 109.58235 * 65.68679 * 3 2 1 27 27 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46759 * 300.00033 * 1 2 3 29 29 H 1.09003 * 109.47075 * 59.99937 * 1 2 3 30 30 H 1.09008 * 109.47035 * 240.00003 * 2 1 3 31 31 H 1.08995 * 109.47252 * 120.00344 * 2 1 3 32 32 H 1.09002 * 109.47412 * 62.54341 * 5 3 2 33 33 H 1.09008 * 109.46326 * 302.55129 * 5 3 2 34 34 H 0.97001 * 120.00638 * 359.97438 * 11 9 7 35 35 H 1.08999 * 109.47336 * 59.99419 * 12 11 9 36 36 H 1.09005 * 109.46675 * 299.99855 * 12 11 9 37 37 H 1.09000 * 109.46702 * 174.13126 * 14 13 12 38 38 H 1.09008 * 109.47066 * 294.12337 * 14 13 12 39 39 H 1.08995 * 109.47569 * 54.12769 * 14 13 12 40 40 H 1.09002 * 109.46926 * 303.42601 * 15 13 12 41 41 H 1.09005 * 109.46911 * 63.42036 * 15 13 12 42 42 H 1.08991 * 109.47180 * 183.41894 * 15 13 12 43 43 H 0.96995 * 120.00126 * 354.97965 * 19 18 16 44 44 H 1.08995 * 109.46907 * 54.64903 * 24 6 5 45 45 H 1.09003 * 109.46908 * 174.63878 * 24 6 5 46 46 H 1.08999 * 109.70114 * 297.99413 * 25 24 6 47 47 H 1.09003 * 109.62699 * 177.61886 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6028 1.9866 -0.8372 5 6 3.5672 1.4473 -0.1259 6 7 4.0580 2.8249 -0.0645 7 6 4.6573 3.3678 -1.1429 8 8 4.6691 2.7672 -2.1971 9 6 5.3074 4.7096 -1.0400 10 8 5.4137 5.2510 0.0409 11 7 5.7756 5.3182 -2.1476 12 6 6.4134 6.6332 -2.0467 13 6 6.8520 7.0954 -3.4377 14 6 5.6293 7.1904 -4.3526 15 6 7.8472 6.0892 -4.0192 16 6 7.5075 8.4484 -3.3340 17 1 7.6693 8.8972 -2.3651 18 6 7.9006 9.1133 -4.4761 19 7 7.9306 10.4279 -4.4942 20 14 8.3908 8.1468 -5.9976 21 1 8.7701 9.0885 -7.0813 22 1 9.5463 7.2709 -5.6767 23 1 7.2462 7.3127 -6.4442 24 6 3.9101 3.6174 1.1572 25 6 2.4156 3.8593 1.4254 26 16 1.5785 2.2517 1.5604 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8547 1.0013 -1.0781 33 1 4.0009 0.8704 0.6911 34 1 5.6909 4.8853 -3.0115 35 1 7.2846 6.5655 -1.3952 36 1 5.7045 7.3500 -1.6320 37 1 5.9249 7.6181 -5.3106 38 1 5.2162 6.1942 -4.5115 39 1 4.8761 7.8263 -3.8876 40 1 8.6899 5.9762 -3.3372 41 1 7.3547 5.1258 -4.1510 42 1 8.2059 6.4488 -4.9836 43 1 7.6075 10.9310 -3.7305 44 1 4.3495 3.0775 1.9959 45 1 4.4190 4.5734 1.0340 46 1 1.9822 4.4289 0.6033 47 1 2.2956 4.4129 2.3567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422487942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:32 Heat of formation + Delta-G solvation = -67.126101 kcal Electronic energy + Delta-G solvation = -26737.618051 eV Core-core repulsion = 23046.890903 eV Total energy + Delta-G solvation = -3690.727148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20120 -40.09126 -38.62829 -37.96847 -35.94011 -35.10191 -33.45091 -31.89724 -30.55621 -28.30610 -28.02714 -26.69278 -25.72971 -24.88224 -23.22233 -22.47864 -21.49473 -20.92777 -19.23887 -18.57338 -18.36607 -17.64964 -17.17504 -16.96930 -16.55302 -16.37804 -16.09258 -15.91772 -15.58296 -15.12892 -15.04929 -14.61732 -14.50511 -14.44452 -14.13376 -14.03894 -13.95154 -13.70448 -13.64147 -13.06727 -13.00816 -12.87193 -12.50840 -12.48162 -12.23981 -12.06917 -12.05542 -11.91321 -11.76239 -11.73572 -11.00863 -10.91089 -10.69150 -10.40341 -10.28760 -10.17400 -10.11504 -8.75767 -8.70665 -6.31086 0.15724 0.63743 1.14032 1.44832 1.45568 1.51357 1.74155 1.94275 2.32811 2.48568 2.98620 3.13571 3.47141 3.71899 3.84059 3.95861 4.00479 4.01409 4.24923 4.26833 4.30231 4.38785 4.48837 4.50036 4.61298 4.66872 4.70390 4.75521 4.78887 4.82243 4.84286 4.87632 5.03836 5.05852 5.07679 5.15396 5.17270 5.37452 5.39589 5.47982 5.70987 5.74898 6.04151 6.08909 6.13080 6.54652 6.59977 6.82059 7.40005 8.60457 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026518 B = 0.002646 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.633185 B =10578.500146 C =11042.649976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.058 4.058 4 H 0.078 0.922 5 C 0.107 3.893 6 N -0.582 5.582 7 C 0.513 3.487 8 O -0.533 6.533 9 C 0.502 3.498 10 O -0.527 6.527 11 N -0.676 5.676 12 C 0.153 3.847 13 C 0.031 3.969 14 C -0.142 4.142 15 C -0.152 4.152 16 C -0.609 4.609 17 H 0.025 0.975 18 C -0.002 4.002 19 N -0.923 5.923 20 Si 1.082 2.918 21 H -0.313 1.313 22 H -0.267 1.267 23 H -0.241 1.241 24 C 0.044 3.956 25 C -0.094 4.094 26 S -0.267 6.267 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.416 0.584 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.258 0.742 44 H 0.095 0.905 45 H 0.161 0.839 46 H 0.075 0.925 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -22.396 9.584 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.188 4.188 4 H 0.097 0.903 5 C -0.016 4.016 6 N -0.314 5.314 7 C 0.295 3.705 8 O -0.410 6.410 9 C 0.284 3.716 10 O -0.407 6.407 11 N -0.327 5.327 12 C 0.030 3.970 13 C 0.029 3.971 14 C -0.199 4.199 15 C -0.209 4.209 16 C -0.647 4.647 17 H 0.043 0.957 18 C -0.203 4.203 19 N -0.557 5.557 20 Si 0.910 3.090 21 H -0.242 1.242 22 H -0.194 1.194 23 H -0.167 1.167 24 C -0.079 4.079 25 C -0.243 4.243 26 S -0.040 6.040 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.255 0.745 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.177 0.823 46 H 0.094 0.906 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.795 -22.531 9.110 27.465 hybrid contribution 0.200 1.056 0.532 1.199 sum -12.595 -21.475 9.642 26.698 Atomic orbital electron populations 1.21782 0.94656 1.02549 1.01943 1.21360 0.96951 0.91231 1.04167 1.23665 0.97491 1.01160 0.96447 0.90312 1.22046 0.92498 0.81371 1.05688 1.47886 1.55733 1.14670 1.13109 1.20041 0.79736 0.86447 0.84256 1.90741 1.59184 1.62990 1.28068 1.20265 0.80152 0.86388 0.84807 1.90245 1.57498 1.66439 1.26547 1.46051 1.56301 1.20188 1.10203 1.21367 0.95963 0.80950 0.98714 1.18619 0.93226 0.93983 0.91224 1.22173 0.97939 1.00016 0.99812 1.22322 1.00036 0.98415 1.00131 1.21790 1.45656 1.03635 0.93609 0.95693 1.26905 0.93292 0.95836 1.04252 1.70963 1.44975 1.08012 1.31737 0.83815 0.78707 0.73769 0.72758 1.24199 1.19402 1.16664 1.23588 0.96125 1.02116 0.86040 1.23989 0.97048 0.96335 1.06936 1.86880 1.70022 1.18444 1.28698 0.91026 0.92737 0.92922 0.88978 0.89997 0.87806 0.87770 0.74523 0.92308 0.92643 0.93548 0.92380 0.94283 0.92961 0.91804 0.94313 0.93299 0.88719 0.82304 0.90634 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.75 71.98 0.70 -1.09 16 2 C -0.10 -1.13 5.41 30.60 0.17 -0.96 16 3 C -0.06 -0.91 2.75 30.67 0.08 -0.83 16 4 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 5 C 0.11 1.81 5.49 86.48 0.47 2.28 16 6 N -0.58 -12.41 2.78 -822.08 -2.29 -14.70 16 7 C 0.51 13.54 7.70 87.27 0.67 14.21 16 8 O -0.53 -15.57 15.83 -3.21 -0.05 -15.62 16 9 C 0.50 14.86 7.76 87.27 0.68 15.53 16 10 O -0.53 -16.76 13.05 -3.24 -0.04 -16.80 16 11 N -0.68 -20.93 5.01 -464.40 -2.33 -23.26 16 12 C 0.15 5.73 4.50 86.38 0.39 6.11 16 13 C 0.03 1.29 0.50 -52.93 -0.03 1.26 16 14 C -0.14 -5.52 7.90 71.98 0.57 -4.95 16 15 C -0.15 -5.69 7.70 71.98 0.55 -5.14 16 16 C -0.61 -32.23 8.42 25.60 0.22 -32.01 16 17 H 0.02 1.46 7.99 -2.91 -0.02 1.44 16 18 C 0.00 -0.09 5.07 84.66 0.43 0.34 16 19 N -0.92 -55.69 13.69 21.45 0.29 -55.40 16 20 Si 1.08 48.38 23.47 68.60 1.61 49.99 16 21 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.27 -11.04 6.73 99.48 0.67 -10.37 16 23 H -0.24 -9.39 5.78 99.48 0.57 -8.82 16 24 C 0.04 0.85 6.07 86.66 0.53 1.38 16 25 C -0.09 -1.66 6.68 72.24 0.48 -1.18 16 26 S -0.27 -4.69 20.52 -56.49 -1.16 -5.85 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.77 7.18 -2.39 -0.02 0.75 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.84 6.93 -2.39 -0.02 1.82 16 33 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.42 11.96 5.72 -92.71 -0.53 11.43 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.05 1.91 4.53 -2.39 -0.01 1.90 16 38 H 0.06 1.84 7.04 -2.38 -0.02 1.82 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.95 6.96 -2.38 -0.02 1.93 16 42 H 0.04 1.50 2.21 -2.39 -0.01 1.50 16 43 H 0.26 15.73 8.73 -92.71 -0.81 14.92 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.16 3.82 3.65 -88.89 -0.32 3.49 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -61.99 366.46 1.88 -60.11 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.07 Total: 26.57 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.91 Total: -5.04 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -4.32 Total: -93.36 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.09 Total: -32.43 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.61 Total: 49.99 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -1.16 Total: -5.85 kcal Total: -61.99 1.88 -60.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422487942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.016 kcal (2) G-P(sol) polarization free energy of solvation -61.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds