Wall clock time and date at job start Tue Mar 31 2020 15:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47055 * 2 1 4 4 O 1.42903 * 109.46927 * 239.99924 * 2 1 3 5 5 C 1.35752 * 116.99988 * 299.46886 * 4 2 1 6 6 C 1.38960 * 119.90733 * 353.54220 * 5 4 2 7 7 C 1.37742 * 120.09711 * 179.72803 * 6 5 4 8 8 C 1.39755 * 119.89923 * 0.54582 * 7 6 5 9 9 C 1.43202 * 120.09391 * 179.70685 * 8 7 6 10 10 N 7.45484 * 80.13781 * 194.98141 * 2 1 3 11 11 C 1.39758 * 119.81359 * 359.72640 * 8 7 6 12 12 C 1.37731 * 119.90518 * 0.02562 * 11 8 7 13 13 C 1.50704 * 109.46922 * 120.00403 * 2 1 3 14 14 O 1.21282 * 119.99697 * 130.96580 * 13 2 1 15 15 N 1.34774 * 119.99965 * 310.95562 * 13 2 1 16 16 C 1.46494 * 120.00154 * 175.24567 * 15 13 2 17 17 C 1.52991 * 109.47537 * 184.61296 * 16 15 13 18 18 C 1.50701 * 115.55086 * 305.16042 * 17 16 15 19 19 H 1.07997 * 120.00241 * 144.28751 * 18 17 16 20 20 C 1.37878 * 119.99694 * 324.28633 * 18 17 16 21 21 N 1.31516 * 120.00108 * 3.36959 * 20 18 17 22 22 Si 1.86805 * 119.99801 * 183.37349 * 20 18 17 23 23 H 1.48503 * 109.46964 * 90.00169 * 22 20 18 24 24 H 1.48499 * 109.46707 * 209.99853 * 22 20 18 25 25 H 1.48494 * 109.47152 * 329.99977 * 22 20 18 26 26 C 1.53004 * 117.50228 * 159.48749 * 17 16 15 27 27 C 1.53002 * 117.49919 * 90.82586 * 17 16 15 28 28 H 1.09002 * 109.46669 * 302.59634 * 1 2 3 29 29 H 1.08996 * 109.46946 * 62.59127 * 1 2 3 30 30 H 1.09001 * 109.47241 * 182.59386 * 1 2 3 31 31 H 1.08999 * 109.47076 * 184.85936 * 3 2 1 32 32 H 1.08998 * 109.47326 * 304.85973 * 3 2 1 33 33 H 1.09000 * 109.46872 * 64.86098 * 3 2 1 34 34 H 1.08001 * 119.95402 * 359.97438 * 6 5 4 35 35 H 1.07997 * 120.04812 * 180.25390 * 7 6 5 36 36 H 1.08005 * 120.04462 * 179.97438 * 11 8 7 37 37 H 1.07999 * 119.95118 * 179.97438 * 12 11 8 38 38 H 0.97001 * 119.99688 * 354.98013 * 15 13 2 39 39 H 1.08998 * 109.47200 * 304.61701 * 16 15 13 40 40 H 1.09004 * 109.46760 * 64.61381 * 16 15 13 41 41 H 0.96999 * 119.99660 * 185.00596 * 21 20 18 42 42 H 1.08997 * 117.49734 * 359.97438 * 26 17 16 43 43 H 1.08996 * 117.50052 * 145.02318 * 26 17 16 44 44 H 1.09005 * 117.49867 * 214.97997 * 27 17 16 45 45 H 1.09003 * 117.49995 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 1.6508 -1.9754 -1.3152 6 6 0.9730 -2.6293 -0.2934 7 6 0.6053 -3.9484 -0.4421 8 6 0.9250 -4.6324 -1.6182 9 6 0.5504 -6.0056 -1.7746 10 7 0.2532 -7.0950 -1.8986 11 6 1.6118 -3.9725 -2.6410 12 6 1.9711 -2.6519 -2.4861 13 6 2.0324 -0.7105 1.2305 14 8 2.8837 -1.5685 1.1302 15 7 1.5356 -0.3924 2.4423 16 6 1.9464 -1.1530 3.6250 17 6 1.1568 -0.6686 4.8425 18 6 1.2341 0.8105 5.1210 19 1 0.3715 1.3331 5.5072 20 6 2.4061 1.4964 4.8826 21 7 3.4355 0.8745 4.3505 22 14 2.5319 3.3092 5.3158 23 1 3.0230 3.4521 6.7100 24 1 3.4794 3.9755 4.3865 25 1 1.1935 3.9410 5.1952 26 6 1.0647 -1.6099 6.0452 27 6 -0.1612 -1.3788 5.1581 28 1 -0.3633 0.5536 0.8658 29 1 -0.3633 0.4731 -0.9123 30 1 -0.3634 -1.0266 0.0465 31 1 3.1265 1.4437 -0.0871 32 1 1.6074 1.9808 -0.8432 33 1 1.7495 1.9305 0.9303 34 1 0.7306 -2.1013 0.6170 35 1 0.0750 -4.4546 0.3508 36 1 1.8611 -4.4976 -3.5513 37 1 2.5022 -2.1414 -3.2758 38 1 0.9091 0.3427 2.5318 39 1 1.7492 -2.2125 3.4621 40 1 3.0119 -1.0045 3.8004 41 1 4.2822 1.3368 4.2497 42 1 1.5665 -2.5746 5.9688 43 1 1.0598 -1.1595 7.0377 44 1 -0.9721 -0.7764 5.5675 45 1 -0.4659 -2.1910 4.4980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431116890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:37 Heat of formation + Delta-G solvation = 19.193353 kcal Electronic energy + Delta-G solvation = -28558.994145 eV Core-core repulsion = 24736.566138 eV Total energy + Delta-G solvation = -3822.428007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21405 -38.91037 -37.71228 -36.63732 -36.11969 -33.97913 -32.65636 -32.22143 -31.20879 -30.30476 -27.44314 -26.28018 -25.49555 -24.03021 -23.17300 -22.18068 -21.32774 -19.69494 -19.43478 -18.99221 -18.02734 -16.64666 -16.28627 -16.14099 -15.32948 -15.04628 -14.87746 -14.45931 -14.19809 -14.17891 -13.97894 -13.78678 -13.58665 -13.26961 -13.18092 -12.88362 -12.73105 -12.52389 -12.31460 -12.21055 -12.12596 -11.90384 -11.87624 -11.55771 -11.45220 -11.20410 -10.91716 -10.89192 -10.73456 -10.61913 -10.36079 -9.82142 -9.23447 -9.11949 -9.03413 -8.97729 -8.43013 -8.12271 -7.98663 -6.12624 -4.32547 0.84267 1.27840 2.65625 2.93947 3.03675 3.11883 3.13212 3.22770 3.23641 3.74794 3.84745 3.93779 4.19020 4.69967 4.70975 4.78519 4.79593 4.86697 5.09108 5.17631 5.28374 5.37064 5.46223 5.50063 5.61636 5.72340 5.73091 5.85674 5.91308 6.01121 6.02487 6.14858 6.19327 6.26126 6.28504 6.42626 6.50515 6.53695 6.58700 6.79108 6.96834 7.15822 7.26911 7.42268 7.48492 7.49416 7.85870 8.18633 8.33242 8.69587 8.91302 9.31515 10.76780 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.003800 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.032429 B = 7367.523655 C = 8541.363547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.094 3.906 3 C -0.134 4.134 4 O -0.282 6.282 5 C 0.183 3.817 6 C -0.190 4.190 7 C -0.030 4.030 8 C -0.083 4.083 9 C 0.267 3.733 10 N -0.438 5.438 11 C -0.034 4.034 12 C -0.160 4.160 13 C 0.481 3.519 14 O -0.541 6.541 15 N -0.673 5.673 16 C 0.162 3.838 17 C 0.036 3.964 18 C -0.498 4.498 19 H 0.062 0.938 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.198 4.198 27 C -0.212 4.212 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.400 0.600 39 H 0.023 0.977 40 H 0.117 0.883 41 H 0.264 0.736 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 0.134 -11.278 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.052 3.948 3 C -0.192 4.192 4 O -0.194 6.194 5 C 0.136 3.864 6 C -0.209 4.209 7 C -0.051 4.051 8 C -0.087 4.087 9 C -0.047 4.047 10 N -0.114 5.114 11 C -0.054 4.054 12 C -0.178 4.178 13 C 0.264 3.736 14 O -0.420 6.420 15 N -0.321 5.321 16 C 0.040 3.960 17 C 0.035 3.965 18 C -0.535 4.535 19 H 0.080 0.920 20 C -0.130 4.130 21 N -0.503 5.503 22 Si 0.718 3.282 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.237 4.237 27 C -0.249 4.249 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.235 0.765 39 H 0.041 0.959 40 H 0.135 0.865 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.758 -1.978 -11.764 12.843 hybrid contribution -0.060 1.672 0.891 1.895 sum -4.818 -0.307 -10.873 11.897 Atomic orbital electron populations 1.22782 0.92974 1.04729 1.04529 1.21949 0.94907 0.93920 0.84026 1.21770 1.03145 0.90357 1.03888 1.86144 1.70463 1.21000 1.41753 1.19153 0.90490 0.83665 0.93096 1.21552 1.03698 0.96019 0.99627 1.20920 0.95742 0.93330 0.95118 1.15853 1.08494 0.86528 0.97842 1.25706 0.93046 0.92647 0.93349 1.81224 1.10032 1.11921 1.08190 1.20838 0.94067 0.93221 0.97296 1.20255 1.06120 0.94315 0.97143 1.20518 0.83331 0.84428 0.85287 1.90740 1.31493 1.33601 1.86192 1.45745 1.45317 1.34985 1.06065 1.21169 1.03356 0.89665 0.81832 1.19221 0.92254 0.93174 0.91818 1.20529 0.98322 0.90600 1.44057 0.92026 1.25004 0.95941 0.98282 0.93781 1.69861 1.02000 1.36846 1.41580 0.86601 0.78088 0.84842 0.78629 1.20527 1.21065 1.19770 1.22945 1.02398 1.01041 0.97274 1.22961 0.92874 1.03772 1.05285 0.89621 0.90425 0.90256 0.90752 0.90790 0.89234 0.83895 0.85037 0.84654 0.84309 0.76480 0.95904 0.86543 0.92565 0.91459 0.90175 0.90593 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 7.98 37.16 0.30 -1.85 16 2 C 0.09 1.32 1.00 -91.77 -0.09 1.23 16 3 C -0.13 -1.71 8.83 37.16 0.33 -1.38 16 4 O -0.28 -4.15 9.57 -38.63 -0.37 -4.52 16 5 C 0.18 2.56 5.64 -39.04 -0.22 2.34 16 6 C -0.19 -2.68 5.94 -39.50 -0.23 -2.92 16 7 C -0.03 -0.38 9.75 -39.20 -0.38 -0.77 16 8 C -0.08 -0.99 5.74 -106.84 -0.61 -1.60 16 9 C 0.27 3.45 15.33 -22.47 -0.34 3.11 16 10 N -0.44 -6.48 18.54 41.84 0.78 -5.71 16 11 C -0.03 -0.35 9.75 -39.20 -0.38 -0.73 16 12 C -0.16 -1.83 9.97 -39.50 -0.39 -2.22 16 13 C 0.48 8.70 4.07 -10.98 -0.04 8.66 16 14 O -0.54 -11.77 14.51 -14.11 -0.20 -11.97 16 15 N -0.67 -12.55 5.00 -60.30 -0.30 -12.85 16 16 C 0.16 3.50 4.61 -4.05 -0.02 3.48 16 17 C 0.04 0.78 2.06 -155.66 -0.32 0.46 16 18 C -0.50 -11.61 8.32 -34.44 -0.29 -11.90 16 19 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 20 C 0.07 1.75 5.33 -17.82 -0.09 1.66 16 21 N -0.87 -21.35 10.20 55.43 0.57 -20.78 16 22 Si 0.89 18.64 29.54 -169.99 -5.02 13.62 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.20 -4.06 9.96 -26.69 -0.27 -4.32 16 27 C -0.21 -4.04 9.93 -26.69 -0.26 -4.31 16 28 H 0.08 0.88 7.22 -51.93 -0.37 0.51 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.89 4.94 -51.93 -0.26 0.63 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.14 2.16 3.65 -52.49 -0.19 1.97 16 35 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.40 7.05 6.95 -40.82 -0.28 6.77 16 39 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.12 2.93 5.88 -51.93 -0.31 2.63 16 41 H 0.26 6.42 8.32 -40.82 -0.34 6.08 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -27.72 375.03 -8.27 -35.98 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.03 Total: 11.65 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -3.33 Total: -11.07 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 1.04 Total: -39.34 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.57 Total: -16.49 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.72 -8.27 -35.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431116890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.178 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds