Wall clock time and date at job start Tue Mar 31 2020 15:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00084 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 C 1.53001 * 109.47124 * 240.00284 * 2 1 3 13 13 S 1.81394 * 109.47307 * 59.99557 * 12 2 1 14 14 O 1.42098 * 110.54610 * 291.62849 * 13 12 2 15 15 O 1.42105 * 110.54276 * 68.37684 * 13 12 2 16 16 N 1.65603 * 104.45217 * 180.02562 * 13 12 2 17 17 C 1.47423 * 125.64390 * 269.69434 * 16 13 12 18 18 C 1.55136 * 104.72191 * 155.81470 * 17 16 13 19 19 C 1.55155 * 101.48234 * 37.29223 * 18 17 16 20 20 H 1.09000 * 110.87080 * 82.76888 * 19 18 17 21 21 N 1.46901 * 110.71942 * 205.97097 * 19 18 17 22 22 C 1.48227 * 110.99911 * 174.88751 * 21 19 18 23 23 C 1.51124 * 105.36318 * 144.90081 * 22 21 19 24 24 C 1.30967 * 109.45125 * 343.02001 * 23 22 21 25 25 C 1.48232 * 110.99859 * 288.52082 * 21 19 18 26 26 C 1.47021 * 125.64918 * 89.99853 * 16 13 12 27 27 H 1.08995 * 109.47131 * 299.99850 * 1 2 3 28 28 H 1.08998 * 109.47544 * 60.00297 * 1 2 3 29 29 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47156 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47223 * 299.99899 * 3 2 1 32 32 H 1.08995 * 109.47095 * 60.00128 * 3 2 1 33 33 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47339 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.46926 * 299.99861 * 12 2 1 36 36 H 1.08994 * 110.37056 * 274.73880 * 17 16 13 37 37 H 1.09003 * 110.36939 * 37.07233 * 17 16 13 38 38 H 1.09001 * 111.18888 * 279.19201 * 18 17 16 39 39 H 1.09000 * 110.93911 * 155.28702 * 18 17 16 40 40 H 1.09000 * 110.26715 * 263.86951 * 22 21 19 41 41 H 1.08998 * 110.26914 * 25.92671 * 22 21 19 42 42 H 1.07991 * 125.27327 * 163.00543 * 23 22 21 43 43 H 1.08003 * 125.26608 * 179.97438 * 24 23 22 44 44 H 1.08992 * 110.26932 * 334.07393 * 25 21 19 45 45 H 1.09001 * 110.26464 * 96.03978 * 25 21 19 46 46 H 1.09004 * 109.88146 * 300.44031 * 26 16 13 47 47 H 1.08998 * 109.87889 * 61.60840 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.1368 -2.2939 3.6037 10 1 3.1434 -0.1955 4.8187 11 1 1.1574 -1.5870 4.8137 12 6 2.0400 -0.7212 -1.2493 13 16 1.4353 0.1339 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0479 1.4101 -2.8544 16 7 2.0529 -0.7408 -3.9937 17 6 3.3489 -0.4991 -4.6535 18 6 3.7342 -1.8659 -5.2781 19 6 2.3519 -2.3918 -5.7471 20 1 2.0842 -1.9698 -6.7158 21 7 2.3458 -3.8598 -5.8022 22 6 0.9947 -4.3734 -6.1309 23 6 1.2287 -5.5998 -6.9823 24 6 2.4572 -5.5879 -7.4359 25 6 3.1675 -4.3524 -6.9333 26 6 1.3968 -1.8828 -4.6470 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7088 1.1613 3.4844 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 3.2440 0.2590 -5.4295 37 1 4.0962 -0.1930 -3.9214 38 1 4.1726 -2.5300 -4.5331 39 1 4.4086 -1.7315 -6.1238 40 1 0.4611 -4.6427 -5.2194 41 1 0.4328 -3.6263 -6.6914 42 1 0.4965 -6.3673 -7.1849 43 1 2.8950 -6.3442 -8.0706 44 1 3.2175 -3.5994 -7.7197 45 1 4.1704 -4.6054 -6.5893 46 1 1.2161 -2.6730 -3.9183 47 1 0.4546 -1.5638 -5.0925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451245615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:24 Heat of formation + Delta-G solvation = -26.975654 kcal Electronic energy + Delta-G solvation = -27346.893462 eV Core-core repulsion = 23657.907368 eV Total energy + Delta-G solvation = -3688.986094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.13974 -37.72573 -36.54477 -36.25100 -35.28275 -32.59381 -31.64472 -30.04348 -28.66081 -27.75278 -26.59083 -25.70540 -25.21382 -22.96415 -22.22271 -20.51561 -19.60693 -19.31845 -18.46661 -17.47557 -17.03823 -16.05618 -15.85216 -15.56100 -15.24574 -14.94686 -14.71263 -13.90532 -13.80607 -13.65513 -13.30753 -13.07524 -12.94167 -12.78141 -12.66233 -12.52648 -12.49392 -12.08216 -11.65519 -11.59481 -11.49081 -11.39704 -11.16824 -11.07533 -11.04888 -11.00411 -10.89857 -10.68548 -10.34502 -10.26968 -10.08872 -9.83139 -9.64079 -9.57283 -8.90945 -8.61968 -8.56661 -8.39299 -6.02278 -4.14020 0.81518 1.83888 3.08955 3.26125 3.34478 3.37591 3.62501 4.08515 4.34101 4.35922 4.41840 4.43619 4.56452 4.82023 4.91414 5.08842 5.16113 5.17100 5.22926 5.23225 5.31176 5.33401 5.47210 5.59918 5.64454 5.68221 5.70424 5.71615 5.75288 6.01128 6.04233 6.15210 6.25195 6.40670 6.50462 6.56383 6.71866 6.73420 6.80844 6.91761 7.05236 7.32741 7.51573 7.69380 7.99097 8.11059 8.34388 8.84860 9.51359 10.99091 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.003326 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.146958 B = 8416.979890 C = 9118.977863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.500 4.500 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.579 4.579 13 S 2.607 3.393 14 O -0.960 6.960 15 O -0.959 6.959 16 N -1.020 6.020 17 C 0.123 3.877 18 C -0.121 4.121 19 C 0.061 3.939 20 H 0.061 0.939 21 N -0.493 5.493 22 C 0.046 3.954 23 C -0.165 4.165 24 C -0.173 4.173 25 C 0.054 3.946 26 C 0.129 3.871 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.262 0.738 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -9.573 -19.724 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.713 4.713 13 S 2.707 3.293 14 O -0.951 6.951 15 O -0.950 6.950 16 N -0.856 5.856 17 C -0.003 4.003 18 C -0.160 4.160 19 C -0.049 4.049 20 H 0.079 0.921 21 N -0.218 5.218 22 C -0.081 4.081 23 C -0.183 4.183 24 C -0.191 4.191 25 C -0.073 4.073 26 C 0.003 3.997 27 H 0.114 0.886 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.591 -8.780 -19.106 21.331 hybrid contribution 0.398 -0.805 0.322 0.953 sum 3.989 -9.585 -18.784 21.462 Atomic orbital electron populations 1.22272 0.96916 1.00634 1.02288 1.17941 0.92831 0.92197 0.89112 1.22276 0.99722 0.97835 1.02305 1.20991 1.31596 1.12043 0.89358 0.92223 1.24948 0.94902 0.94997 0.98943 1.69815 1.36361 1.22692 1.23348 0.86476 0.78615 0.79662 0.82884 1.19808 1.20963 1.20942 1.30551 1.11266 1.12862 1.16631 1.05385 0.74422 0.74631 0.74835 1.93529 1.29309 1.86557 1.85661 1.93538 1.78274 1.37459 1.85698 1.58931 1.30054 1.46830 1.49805 1.21947 0.84507 0.96735 0.97129 1.22885 0.95569 0.96319 1.01236 1.22991 0.96846 0.87215 0.97841 0.92075 1.65717 1.07596 1.08518 1.39944 1.22151 0.91841 0.94802 0.99342 1.23594 0.97704 0.98407 0.98638 1.23565 0.96221 0.98494 1.00827 1.22060 0.98702 0.94715 0.91854 1.21584 0.94877 0.88205 0.95025 0.88635 0.95423 0.94466 0.94465 0.95424 0.88620 0.92816 0.86438 0.86386 0.91441 0.90244 0.89190 0.90305 0.88997 0.92127 0.84713 0.84798 0.92473 0.89402 0.90547 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 7.77 37.16 0.29 -3.80 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.08 7.77 37.16 0.29 -3.79 16 4 C -0.50 -13.31 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.32 9.35 55.43 0.52 -23.80 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C -0.58 -11.64 5.12 37.16 0.19 -11.45 16 13 S 2.61 50.12 4.69 -107.50 -0.50 49.61 16 14 O -0.96 -20.65 15.22 -57.54 -0.88 -21.53 16 15 O -0.96 -20.53 15.22 -57.54 -0.88 -21.41 16 16 N -1.02 -15.08 3.62 -111.29 -0.40 -15.48 16 17 C 0.12 1.46 6.90 -2.41 -0.02 1.44 16 18 C -0.12 -1.14 6.34 -24.46 -0.16 -1.30 16 19 C 0.06 0.62 2.18 -65.88 -0.14 0.47 16 20 H 0.06 0.57 7.93 -51.93 -0.41 0.15 16 21 N -0.49 -4.83 5.34 -224.51 -1.20 -6.03 16 22 C 0.05 0.41 5.88 -4.04 -0.02 0.39 16 23 C -0.17 -1.27 10.95 -35.81 -0.39 -1.66 16 24 C -0.17 -1.26 10.95 -35.81 -0.39 -1.65 16 25 C 0.05 0.43 6.26 -4.04 -0.03 0.40 16 26 C 0.13 1.65 5.87 -3.06 -0.02 1.63 16 27 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 29 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 32 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 35 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.52 7.79 -51.93 -0.40 0.11 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 44 H 0.06 0.41 7.65 -51.93 -0.40 0.02 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -31.96 370.10 -11.49 -43.45 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.86 Total: 3.17 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -0.85 Total: -29.34 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -1.08 Total: -45.31 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.75 Total: -42.94 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 50.12 SS G_CDS: -0.50 Total: 49.61 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.96 -11.49 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451245615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.473 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds