Wall clock time and date at job start Tue Mar 31 2020 15:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00084 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 C 1.53001 * 109.47124 * 240.00284 * 2 1 3 13 13 S 1.81394 * 109.47307 * 59.99557 * 12 2 1 14 14 O 1.42098 * 110.54610 * 291.62849 * 13 12 2 15 15 O 1.42105 * 110.54276 * 68.37684 * 13 12 2 16 16 N 1.65603 * 104.45217 * 180.02562 * 13 12 2 17 17 C 1.47423 * 125.64390 * 269.69434 * 16 13 12 18 18 C 1.55136 * 104.72191 * 155.81470 * 17 16 13 19 19 C 1.55155 * 101.48234 * 37.29223 * 18 17 16 20 20 H 1.09000 * 110.87080 * 82.76888 * 19 18 17 21 21 N 1.46901 * 110.71942 * 205.97097 * 19 18 17 22 22 C 1.48227 * 110.99911 * 174.88751 * 21 19 18 23 23 C 1.51124 * 105.36318 * 144.90081 * 22 21 19 24 24 C 1.30967 * 109.45125 * 343.02001 * 23 22 21 25 25 C 1.48232 * 110.99859 * 288.52082 * 21 19 18 26 26 C 1.47021 * 125.64918 * 89.99853 * 16 13 12 27 27 H 1.08995 * 109.47131 * 299.99850 * 1 2 3 28 28 H 1.08998 * 109.47544 * 60.00297 * 1 2 3 29 29 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47156 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47223 * 299.99899 * 3 2 1 32 32 H 1.08995 * 109.47095 * 60.00128 * 3 2 1 33 33 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47339 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.46926 * 299.99861 * 12 2 1 36 36 H 1.08994 * 110.37056 * 274.73880 * 17 16 13 37 37 H 1.09003 * 110.36939 * 37.07233 * 17 16 13 38 38 H 1.09001 * 111.18888 * 279.19201 * 18 17 16 39 39 H 1.09000 * 110.93911 * 155.28702 * 18 17 16 40 40 H 1.09000 * 110.26715 * 263.86951 * 22 21 19 41 41 H 1.08998 * 110.26914 * 25.92671 * 22 21 19 42 42 H 1.07991 * 125.27327 * 163.00543 * 23 22 21 43 43 H 1.08003 * 125.26608 * 179.97438 * 24 23 22 44 44 H 1.08992 * 110.26932 * 334.07393 * 25 21 19 45 45 H 1.09001 * 110.26464 * 96.03978 * 25 21 19 46 46 H 1.09004 * 109.88146 * 300.44031 * 26 16 13 47 47 H 1.08998 * 109.87889 * 61.60840 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.1368 -2.2939 3.6037 10 1 3.1434 -0.1955 4.8187 11 1 1.1574 -1.5870 4.8137 12 6 2.0400 -0.7212 -1.2493 13 16 1.4353 0.1339 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0479 1.4101 -2.8544 16 7 2.0529 -0.7408 -3.9937 17 6 3.3489 -0.4991 -4.6535 18 6 3.7342 -1.8659 -5.2781 19 6 2.3519 -2.3918 -5.7471 20 1 2.0842 -1.9698 -6.7158 21 7 2.3458 -3.8598 -5.8022 22 6 0.9947 -4.3734 -6.1309 23 6 1.2287 -5.5998 -6.9823 24 6 2.4572 -5.5879 -7.4359 25 6 3.1675 -4.3524 -6.9333 26 6 1.3968 -1.8828 -4.6470 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7088 1.1613 3.4844 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 3.2440 0.2590 -5.4295 37 1 4.0962 -0.1930 -3.9214 38 1 4.1726 -2.5300 -4.5331 39 1 4.4086 -1.7315 -6.1238 40 1 0.4611 -4.6427 -5.2194 41 1 0.4328 -3.6263 -6.6914 42 1 0.4965 -6.3673 -7.1849 43 1 2.8950 -6.3442 -8.0706 44 1 3.2175 -3.5994 -7.7197 45 1 4.1704 -4.6054 -6.5893 46 1 1.2161 -2.6730 -3.9183 47 1 0.4546 -1.5638 -5.0925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451245615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:23 Heat of formation + Delta-G solvation = -48.638602 kcal Electronic energy + Delta-G solvation = -27347.832838 eV Core-core repulsion = 23657.907368 eV Total energy + Delta-G solvation = -3689.925470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.85967 -38.60665 -38.17240 -38.13348 -36.93422 -33.65442 -33.38111 -30.90678 -29.36196 -28.62217 -28.26577 -27.71766 -27.26587 -23.82810 -23.04733 -21.31223 -21.29646 -20.24118 -19.66310 -18.88027 -17.93721 -17.86310 -17.05253 -16.96280 -16.69182 -16.24452 -16.02853 -15.13096 -14.84528 -14.69425 -14.51888 -14.45618 -14.36705 -14.25043 -13.91019 -13.73598 -13.36261 -13.23162 -13.11159 -13.09066 -12.92049 -12.78526 -12.56224 -12.54682 -12.36599 -12.20531 -12.14325 -12.10640 -11.98731 -11.92982 -11.80317 -11.59413 -11.40813 -10.66730 -10.43845 -10.43484 -9.94452 -9.23663 -8.04416 -6.23160 -0.70792 1.30241 1.42470 1.45253 1.55303 1.74943 2.43512 2.83971 2.89806 3.09795 3.18294 3.42448 3.62582 3.77613 3.97863 4.03916 4.12517 4.14894 4.31955 4.40762 4.50020 4.55398 4.57793 4.58357 4.64235 4.76975 4.78043 4.81954 4.82596 4.83819 4.92279 4.96063 5.04061 5.06593 5.11021 5.23239 5.36004 5.41364 5.50590 5.51448 5.62213 5.63304 5.95032 5.98885 6.02922 6.09397 6.32573 6.81468 7.45170 8.95747 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.003326 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.146958 B = 8416.979890 C = 9118.977863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.283 1.283 12 C -0.583 4.583 13 S 2.627 3.373 14 O -0.987 6.987 15 O -0.983 6.983 16 N -1.017 6.017 17 C 0.109 3.891 18 C -0.109 4.109 19 C 0.070 3.930 20 H 0.074 0.926 21 N -0.508 5.508 22 C 0.040 3.960 23 C -0.177 4.177 24 C -0.171 4.171 25 C 0.051 3.949 26 C 0.121 3.879 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.625 -11.221 -21.381 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.209 1.209 12 C -0.716 4.716 13 S 2.727 3.273 14 O -0.978 6.978 15 O -0.974 6.974 16 N -0.856 5.856 17 C -0.016 4.016 18 C -0.148 4.148 19 C -0.041 4.041 20 H 0.091 0.909 21 N -0.233 5.233 22 C -0.087 4.087 23 C -0.195 4.195 24 C -0.189 4.189 25 C -0.076 4.076 26 C -0.005 4.005 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.167 0.833 43 H 0.172 0.828 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.153 -10.432 -20.757 23.795 hybrid contribution -0.084 -0.307 0.764 0.828 sum 5.068 -10.739 -19.992 23.253 Atomic orbital electron populations 1.22200 0.97745 1.00416 1.01328 1.17930 0.92339 0.92197 0.90805 1.22204 0.99892 0.98279 1.01353 1.21313 1.31676 1.12264 0.90415 0.92024 1.25692 0.95140 0.95671 1.01693 1.69950 1.37121 1.23738 1.23843 0.85538 0.78055 0.78737 0.79497 1.19026 1.20788 1.20869 1.30486 1.12384 1.13156 1.15557 1.04423 0.73617 0.74256 0.75008 1.93485 1.31208 1.86963 1.86138 1.93498 1.78553 1.39160 1.86157 1.58521 1.31486 1.47093 1.48471 1.22309 0.83050 0.98744 0.97473 1.22865 0.95591 0.94393 1.01999 1.22913 0.96317 0.87692 0.97162 0.90857 1.65693 1.08241 1.08103 1.41264 1.22186 0.91607 0.95616 0.99281 1.23721 0.98498 0.98418 0.98897 1.23802 0.95939 0.98555 1.00580 1.22149 0.98655 0.95249 0.91551 1.21788 0.95594 0.87350 0.95784 0.90907 0.95004 0.94243 0.94005 0.94971 0.90923 0.92869 0.84740 0.85121 0.90374 0.89889 0.89503 0.87261 0.89982 0.92054 0.83325 0.82811 0.91410 0.88779 0.90978 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.10 7.77 71.98 0.56 -7.54 16 2 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 3 C -0.16 -8.06 7.77 71.98 0.56 -7.50 16 4 C -0.52 -27.46 8.01 25.60 0.21 -27.26 16 5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.93 5.15 84.66 0.44 1.37 16 7 N -0.91 -50.77 9.35 21.45 0.20 -50.57 16 8 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 C -0.58 -23.07 5.12 71.98 0.37 -22.70 16 13 S 2.63 99.94 4.69 -56.49 -0.26 99.68 16 14 O -0.99 -42.63 15.22 -127.65 -1.94 -44.57 16 15 O -0.98 -41.75 15.22 -127.65 -1.94 -43.70 16 16 N -1.02 -28.77 3.62 -506.01 -1.83 -30.61 16 17 C 0.11 2.35 6.90 86.93 0.60 2.95 16 18 C -0.11 -1.73 6.34 32.06 0.20 -1.53 16 19 C 0.07 1.24 2.18 46.10 0.10 1.34 16 20 H 0.07 1.14 7.93 -2.39 -0.02 1.13 16 21 N -0.51 -8.88 5.34 -864.21 -4.62 -13.50 16 22 C 0.04 0.67 5.88 85.44 0.50 1.17 16 23 C -0.18 -2.37 10.95 25.81 0.28 -2.09 16 24 C -0.17 -2.03 10.95 25.81 0.28 -1.75 16 25 C 0.05 0.66 6.26 85.43 0.54 1.20 16 26 C 0.12 2.93 5.87 86.73 0.51 3.44 16 27 H 0.07 4.02 6.07 -2.39 -0.01 4.00 16 28 H 0.03 1.55 5.46 -2.39 -0.01 1.53 16 29 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 32 H 0.07 3.99 6.07 -2.39 -0.01 3.97 16 33 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 35 H 0.13 4.76 8.14 -2.39 -0.02 4.74 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 42 H 0.15 1.49 8.06 -2.92 -0.02 1.46 16 43 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.80 7.96 -2.38 -0.02 1.78 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -68.18 370.10 -2.32 -70.50 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.94 Total: 23.65 kcal Atomic # 6 Polarization: -60.61 SS G_CDS: 5.12 Total: -55.50 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -6.25 Total: -94.68 kcal Atomic # 8 Polarization: -84.38 SS G_CDS: -3.89 Total: -88.27 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 99.94 SS G_CDS: -0.26 Total: 99.68 kcal Total: -68.18 -2.32 -70.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451245615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.861 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds