Wall clock time and date at job start Tue Mar 31 2020 15:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 C 1.50700 * 109.47334 * 239.99993 * 2 1 3 5 5 H 1.08008 * 119.99920 * 240.00048 * 4 2 1 6 6 C 1.37873 * 119.99996 * 59.99524 * 4 2 1 7 7 N 1.31511 * 120.00210 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00104 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46882 * 60.00213 * 8 6 4 10 10 H 1.48493 * 109.47350 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47143 * 300.00414 * 8 6 4 12 12 C 1.53000 * 109.47467 * 119.99830 * 2 1 3 13 13 S 1.81402 * 109.46972 * 300.00445 * 12 2 1 14 14 O 1.42096 * 110.54665 * 68.37417 * 13 12 2 15 15 O 1.42109 * 110.54058 * 291.61958 * 13 12 2 16 16 N 1.65603 * 104.44835 * 180.02562 * 13 12 2 17 17 C 1.47294 * 125.78903 * 269.99513 * 16 13 12 18 18 C 1.54320 * 107.30354 * 178.92731 * 17 16 13 19 19 C 1.55156 * 102.94464 * 337.81995 * 18 17 16 20 20 H 1.09003 * 111.03466 * 277.41386 * 19 18 17 21 21 N 1.46895 * 111.00647 * 153.57887 * 19 18 17 22 22 C 1.48227 * 111.00496 * 67.62572 * 21 19 18 23 23 C 1.51118 * 105.36345 * 144.89788 * 22 21 19 24 24 C 1.30957 * 109.45800 * 343.02804 * 23 22 21 25 25 C 1.48226 * 111.00020 * 181.26477 * 21 19 18 26 26 C 1.47421 * 125.64875 * 90.00121 * 16 13 12 27 27 H 1.08998 * 109.47189 * 299.99817 * 1 2 3 28 28 H 1.08994 * 109.47207 * 60.00619 * 1 2 3 29 29 H 1.08999 * 109.46613 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47332 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46461 * 300.00057 * 3 2 1 32 32 H 1.08998 * 109.46981 * 59.99456 * 3 2 1 33 33 H 0.96998 * 120.00059 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47579 * 179.97438 * 12 2 1 35 35 H 1.09006 * 109.46984 * 59.99687 * 12 2 1 36 36 H 1.08998 * 109.85284 * 59.50457 * 17 16 13 37 37 H 1.09000 * 109.87058 * 298.35608 * 17 16 13 38 38 H 1.08994 * 110.72364 * 219.45438 * 18 17 16 39 39 H 1.09005 * 110.71950 * 96.17769 * 18 17 16 40 40 H 1.09003 * 110.26721 * 263.87550 * 22 21 19 41 41 H 1.09004 * 110.26541 * 25.92625 * 22 21 19 42 42 H 1.08002 * 125.26691 * 163.00341 * 23 22 21 43 43 H 1.08003 * 125.27256 * 180.02562 * 24 23 22 44 44 H 1.09000 * 110.27178 * 334.06756 * 25 21 19 45 45 H 1.09003 * 110.27043 * 96.03416 * 25 21 19 46 46 H 1.09000 * 110.36879 * 85.26289 * 26 16 13 47 47 H 1.08996 * 110.36801 * 323.04251 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8270 -0.4201 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 6 2.0401 -0.7212 1.2492 13 16 1.4353 0.1339 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4102 2.8544 16 7 2.0542 -0.7399 3.9936 17 6 1.4009 -1.8846 4.6511 18 6 2.3592 -2.3914 5.7494 19 6 3.7395 -1.8635 5.2769 20 1 4.1780 -2.5271 4.5315 21 7 4.6504 -1.6793 6.4145 22 6 5.0168 -2.9826 7.0182 23 6 6.4515 -2.8269 7.4666 24 6 6.9842 -1.7887 6.8721 25 6 5.9590 -1.1464 5.9665 26 6 3.3531 -0.5012 4.6487 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 0.7094 1.1616 -3.4844 34 1 3.1301 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2493 36 1 1.2197 -2.6755 3.9233 37 1 0.4591 -1.5668 5.0986 38 1 2.3565 -3.4805 5.7911 39 1 2.0949 -1.9667 6.7179 40 1 4.3751 -3.1966 7.8729 41 1 4.9372 -3.7778 6.2769 42 1 6.9588 -3.4717 8.1690 43 1 7.9991 -1.4451 7.0076 44 1 6.1447 -1.4244 4.9290 45 1 5.9827 -0.0621 6.0762 46 1 3.2532 0.2590 5.4235 47 1 4.0985 -0.1973 3.9138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451245617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:28 Heat of formation + Delta-G solvation = -49.209047 kcal Electronic energy + Delta-G solvation = -27322.086114 eV Core-core repulsion = 23632.135908 eV Total energy + Delta-G solvation = -3689.950206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.83163 -38.61736 -38.17539 -38.14044 -36.93372 -33.66146 -33.37282 -30.92876 -29.32970 -28.65717 -28.29505 -27.72268 -27.26855 -23.80651 -23.03422 -21.39720 -21.24273 -20.23666 -19.64015 -18.88532 -17.94103 -17.87291 -17.02901 -16.97901 -16.72002 -16.21694 -16.04634 -15.08941 -14.85417 -14.66549 -14.53831 -14.45184 -14.38577 -14.17851 -14.00360 -13.85895 -13.30999 -13.22272 -13.11536 -13.09114 -12.88483 -12.83016 -12.61848 -12.56036 -12.36031 -12.20665 -12.17425 -12.09868 -12.00233 -11.89722 -11.78191 -11.59562 -11.40842 -10.68568 -10.44287 -10.43019 -9.94644 -9.24976 -8.04570 -6.23852 -0.72149 1.30443 1.44633 1.44719 1.52297 1.73537 2.42981 2.83587 2.89159 3.09735 3.18026 3.41245 3.68071 3.78808 3.96002 4.02142 4.08080 4.13765 4.29641 4.38921 4.47229 4.55926 4.57615 4.58411 4.64479 4.77018 4.80115 4.82551 4.83393 4.86641 4.94149 4.95235 5.03217 5.05886 5.11641 5.21505 5.35400 5.38184 5.49768 5.51214 5.61404 5.62239 5.94445 5.98795 6.01715 6.08643 6.31603 6.80508 7.44587 8.95223 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.003310 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.904447 B = 8458.454854 C = 9211.037454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.070 3.930 3 C -0.160 4.160 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.272 1.272 12 C -0.583 4.583 13 S 2.626 3.374 14 O -0.984 6.984 15 O -0.987 6.987 16 N -1.018 6.018 17 C 0.108 3.892 18 C -0.106 4.106 19 C 0.064 3.936 20 H 0.071 0.929 21 N -0.505 5.505 22 C 0.050 3.950 23 C -0.171 4.171 24 C -0.177 4.177 25 C 0.040 3.960 26 C 0.125 3.875 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 -10.328 19.439 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 C -0.217 4.217 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.716 4.716 13 S 2.726 3.274 14 O -0.975 6.975 15 O -0.977 6.977 16 N -0.857 5.857 17 C -0.017 4.017 18 C -0.145 4.145 19 C -0.047 4.047 20 H 0.089 0.911 21 N -0.229 5.229 22 C -0.077 4.077 23 C -0.189 4.189 24 C -0.195 4.195 25 C -0.087 4.087 26 C -0.001 4.001 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.172 0.828 43 H 0.167 0.833 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.716 -9.008 19.721 23.367 hybrid contribution 0.836 -0.922 -2.066 2.412 sum 9.552 -9.930 17.655 22.395 Atomic orbital electron populations 1.22209 0.97692 1.00554 1.01333 1.17921 0.92382 0.92107 0.90803 1.22206 0.99792 0.98425 1.01321 1.21259 1.31861 1.12395 0.90382 0.91874 1.25690 0.95119 0.95644 1.01704 1.69934 1.37078 1.23643 1.23988 0.85653 0.78738 0.78750 0.78729 1.19613 1.21279 1.19684 1.30493 1.12290 1.13397 1.15379 1.04478 0.73662 0.74275 0.75025 1.93491 1.30949 1.86900 1.86148 1.93497 1.78560 1.39488 1.86166 1.58589 1.30627 1.47935 1.48546 1.22029 0.96707 0.87111 0.95826 1.22642 0.91354 1.02320 0.98210 1.23063 0.94367 0.95263 0.91958 0.91102 1.65624 1.10065 1.21933 1.25304 1.22152 0.94968 0.90616 0.99927 1.23800 0.95862 0.98827 1.00418 1.23721 1.00023 0.97660 0.98102 1.22200 0.87559 1.01188 0.97763 1.21986 0.83248 0.98024 0.96813 0.95025 0.90945 0.94006 0.94148 0.90938 0.95050 0.92851 0.84858 0.84582 0.90133 0.91162 0.87521 0.89282 0.88576 0.91649 0.82791 0.83297 0.92290 0.89698 0.90993 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.04 7.78 71.98 0.56 -7.48 16 2 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 3 C -0.16 -8.04 7.78 71.98 0.56 -7.48 16 4 C -0.52 -27.15 8.01 25.60 0.21 -26.94 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 6 C 0.02 0.95 5.15 84.65 0.44 1.39 16 7 N -0.91 -50.47 9.35 21.45 0.20 -50.27 16 8 Si 0.96 42.00 29.54 68.60 2.03 44.02 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 C -0.58 -22.41 5.12 71.98 0.37 -22.04 16 13 S 2.63 99.29 4.69 -56.49 -0.26 99.02 16 14 O -0.98 -42.02 15.23 -127.65 -1.94 -43.96 16 15 O -0.99 -42.56 15.22 -127.65 -1.94 -44.51 16 16 N -1.02 -28.71 3.63 -505.79 -1.84 -30.54 16 17 C 0.11 2.37 6.92 86.68 0.60 2.97 16 18 C -0.11 -1.67 6.09 31.78 0.19 -1.48 16 19 C 0.06 1.16 2.22 46.31 0.10 1.26 16 20 H 0.07 1.20 7.98 -2.39 -0.02 1.18 16 21 N -0.50 -8.64 5.42 -863.01 -4.68 -13.32 16 22 C 0.05 0.65 6.16 85.43 0.53 1.18 16 23 C -0.17 -2.02 10.95 25.82 0.28 -1.74 16 24 C -0.18 -2.34 10.95 25.82 0.28 -2.06 16 25 C 0.04 0.66 6.12 85.44 0.52 1.18 16 26 C 0.12 3.03 5.98 86.86 0.52 3.55 16 27 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 28 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 32 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 33 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 35 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 0.77 7.73 -2.38 -0.02 0.75 16 42 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.06 0.97 7.74 -2.39 -0.02 0.95 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.74 370.51 -2.37 -70.11 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.94 Total: 23.75 kcal Atomic # 6 Polarization: -59.44 SS G_CDS: 5.13 Total: -54.31 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -6.31 Total: -94.13 kcal Atomic # 8 Polarization: -84.58 SS G_CDS: -3.89 Total: -88.47 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 99.29 SS G_CDS: -0.26 Total: 99.02 kcal Total: -67.74 -2.37 -70.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451245617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.904 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds