Wall clock time and date at job start Tue Mar 31 2020 15:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99650 * 2 1 4 4 H 1.09000 * 109.70347 * 4.65408 * 3 2 1 5 5 C 1.53204 * 109.58258 * 125.00403 * 3 2 1 6 6 C 1.53043 * 109.33614 * 174.44059 * 5 3 2 7 7 C 1.53046 * 109.53546 * 298.61558 * 6 5 3 8 8 C 1.53194 * 109.31074 * 61.37306 * 7 6 5 9 9 N 1.46931 * 108.77398 * 305.35685 * 8 7 6 10 10 C 1.34771 * 120.63502 * 233.63543 * 9 8 7 11 11 O 1.21350 * 120.00361 * 171.19727 * 10 9 8 12 12 C 1.49361 * 119.99572 * 351.18912 * 10 9 8 13 13 O 1.21373 * 120.00246 * 353.38030 * 12 10 9 14 14 N 1.34779 * 119.99684 * 173.36995 * 12 10 9 15 15 C 1.39742 * 120.00122 * 183.67152 * 14 12 10 16 16 C 1.39335 * 119.95317 * 144.27504 * 15 14 12 17 17 C 1.38469 * 120.42298 * 180.02562 * 16 15 14 18 18 C 1.37692 * 120.32958 * 359.97438 * 17 16 15 19 19 C 1.40745 * 119.89661 * 0.02562 * 18 17 16 20 20 C 1.41406 * 120.21110 * 180.02562 * 19 18 17 21 21 H 1.08007 * 120.00167 * 211.45437 * 20 19 18 22 22 C 1.39938 * 120.00199 * 31.44533 * 20 19 18 23 23 N 1.30830 * 119.99297 * 7.63365 * 22 20 19 24 24 Si 1.86795 * 120.00432 * 187.62450 * 22 20 19 25 25 H 1.48505 * 109.46941 * 94.99918 * 24 22 20 26 26 H 1.48500 * 109.47265 * 214.99701 * 24 22 20 27 27 H 1.48507 * 109.47252 * 335.00236 * 24 22 20 28 28 C 1.38307 * 119.95134 * 324.00253 * 15 14 12 29 29 H 1.07998 * 120.00311 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99713 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00311 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.49307 * 54.47276 * 5 3 2 33 33 H 1.08994 * 109.49453 * 294.40645 * 5 3 2 34 34 H 1.08992 * 109.46169 * 58.63838 * 6 5 3 35 35 H 1.08992 * 109.45716 * 178.61505 * 6 5 3 36 36 H 1.08999 * 109.49306 * 181.31600 * 7 6 5 37 37 H 1.08993 * 109.50158 * 301.41560 * 7 6 5 38 38 H 1.09001 * 109.58820 * 65.14662 * 8 7 6 39 39 H 1.09001 * 109.58327 * 185.43362 * 8 7 6 40 40 H 0.96995 * 119.99885 * 3.67931 * 14 12 10 41 41 H 1.08001 * 119.78973 * 0.02562 * 16 15 14 42 42 H 1.08006 * 119.83997 * 179.97438 * 17 16 15 43 43 H 1.08004 * 120.05650 * 179.97438 * 18 17 16 44 44 H 0.97007 * 119.99432 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.16225 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3614 2.1348 0.0833 5 6 3.0372 1.3359 1.1823 6 6 3.8963 2.5997 1.0985 7 6 4.7109 2.5799 -0.1969 8 6 3.7566 2.5637 -1.3952 9 7 2.8308 1.4324 -1.2473 10 6 2.6881 0.5279 -2.2362 11 8 2.0467 -0.4843 -2.0448 12 6 3.3192 0.7716 -3.5678 13 8 3.8576 1.8346 -3.7989 14 7 3.2911 -0.1890 -4.5127 15 6 3.9474 0.0092 -5.7304 16 6 4.5712 -1.0618 -6.3669 17 6 5.2248 -0.8763 -7.5735 18 6 5.2648 0.3697 -8.1582 19 6 4.6393 1.4612 -7.5271 20 6 4.6759 2.7435 -8.1219 21 1 4.6813 3.6270 -7.5006 22 6 4.7052 2.8679 -9.5154 23 7 4.5484 1.8106 -10.2699 24 14 4.9678 4.5434 -10.2983 25 1 6.4091 4.7254 -10.6064 26 1 4.1783 4.6328 -11.5529 27 1 4.5249 5.6041 -9.3580 28 6 3.9720 1.2671 -6.3048 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.6798 0.4562 1.1473 33 1 2.4754 1.3391 2.1163 34 1 3.2515 3.4784 1.1086 35 1 4.5730 2.6360 1.9522 36 1 5.3398 3.4688 -0.2448 37 1 5.3377 1.6885 -0.2190 38 1 3.1925 3.4959 -1.4258 39 1 4.3287 2.4523 -2.3164 40 1 2.8152 -1.0179 -4.3476 41 1 4.5448 -2.0430 -5.9163 42 1 5.7055 -1.7131 -8.0585 43 1 5.7762 0.5095 -9.0992 44 1 4.5684 1.8969 -11.2359 45 1 3.4847 2.0971 -5.8148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453730035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:42 Heat of formation + Delta-G solvation = -6.048941 kcal Electronic energy + Delta-G solvation = -27820.452269 eV Core-core repulsion = 23996.929674 eV Total energy + Delta-G solvation = -3823.522595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10372 -39.31293 -37.59071 -37.26551 -34.73683 -34.14056 -33.20855 -32.77844 -30.03164 -29.86826 -28.58817 -26.14962 -25.33465 -24.06794 -23.37276 -21.64557 -20.98562 -20.34699 -20.06041 -19.38916 -17.87335 -17.21295 -16.66053 -15.93448 -15.64319 -15.53536 -15.03161 -14.98168 -14.63175 -14.50487 -14.26014 -14.08501 -13.79703 -13.53675 -13.22526 -12.95360 -12.91766 -12.40355 -12.24628 -11.94667 -11.74465 -11.61817 -11.28780 -11.24547 -11.16821 -11.13923 -10.99284 -10.81606 -10.60223 -10.47717 -10.15657 -9.66288 -9.57165 -9.29371 -9.10706 -8.82679 -8.42414 -7.46824 -7.03825 -6.67828 -4.39814 1.48837 2.05533 2.68612 2.75216 2.88748 3.09509 3.13285 3.17796 3.48627 3.67553 3.96680 4.39392 4.57389 4.63162 4.65494 4.67364 4.84853 4.98688 5.02023 5.28281 5.39922 5.53945 5.58919 5.61716 5.65885 5.73381 5.81221 5.91668 5.97435 6.12771 6.18017 6.27447 6.31973 6.61224 6.65978 6.74448 6.83395 6.95469 7.01975 7.09239 7.22714 7.37635 7.62680 7.75068 7.86528 8.04591 8.04616 8.14433 8.42809 8.63157 8.89886 8.92458 10.25903 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002992 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.996967 B = 9357.261503 C =10182.614651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C 0.167 3.833 4 H 0.080 0.920 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.136 4.136 8 C 0.066 3.934 9 N -0.579 5.579 10 C 0.513 3.487 11 O -0.509 6.509 12 C 0.497 3.503 13 O -0.492 6.492 14 N -0.629 5.629 15 C 0.135 3.865 16 C -0.246 4.246 17 C -0.096 4.096 18 C -0.157 4.157 19 C 0.118 3.882 20 C -0.460 4.460 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.806 5.806 24 Si 0.913 3.087 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.199 4.199 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.411 0.589 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.279 0.721 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -0.330 18.181 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.131 4.131 3 C 0.065 3.935 4 H 0.098 0.902 5 C -0.164 4.164 6 C -0.160 4.160 7 C -0.174 4.174 8 C -0.055 4.055 9 N -0.312 5.312 10 C 0.296 3.704 11 O -0.385 6.385 12 C 0.279 3.721 13 O -0.368 6.368 14 N -0.273 5.273 15 C 0.044 3.956 16 C -0.267 4.267 17 C -0.115 4.115 18 C -0.177 4.177 19 C 0.115 3.885 20 C -0.491 4.491 21 H 0.096 0.904 22 C -0.144 4.144 23 N -0.433 5.433 24 Si 0.737 3.263 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.221 4.221 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.163 0.837 40 H 0.247 0.753 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.536 -0.164 17.890 18.070 hybrid contribution -0.272 0.283 -0.346 0.523 sum -2.807 0.119 17.544 17.768 Atomic orbital electron populations 1.23537 0.95517 1.01440 1.04314 1.22703 0.95914 0.97051 0.97405 1.20590 0.92484 0.96893 0.83489 0.90171 1.21931 0.98018 0.99099 0.97325 1.21566 0.98696 0.97673 0.98030 1.21960 0.98131 1.02899 0.94408 1.22957 0.91947 0.87900 1.02687 1.48116 1.41917 1.26528 1.14683 1.20274 0.81394 0.83353 0.85427 1.90725 1.40986 1.26143 1.80648 1.20057 0.81455 0.85193 0.85370 1.90532 1.43375 1.24019 1.78899 1.43133 1.50851 1.19207 1.14146 1.17487 0.97930 0.95817 0.84395 1.20122 1.10115 0.96397 1.00089 1.20510 0.99355 0.96914 0.94721 1.21455 1.02612 0.92146 1.01492 1.17515 0.87696 0.93617 0.89690 1.19564 1.44946 0.93309 0.91269 0.90370 1.25874 0.92404 0.98513 0.97564 1.69783 1.36734 1.30468 1.06273 0.86226 0.79058 0.82191 0.78784 1.19462 1.20321 1.18620 1.21191 1.06579 0.94912 0.99379 0.89268 0.88378 0.86412 0.91170 0.90518 0.91692 0.91546 0.90343 0.91566 0.91292 0.83688 0.75329 0.88944 0.88739 0.86046 0.91035 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.31 14.31 29.01 0.42 -1.90 16 2 C -0.11 -1.31 5.77 -36.03 -0.21 -1.52 16 3 C 0.17 1.81 3.24 -68.71 -0.22 1.58 16 4 H 0.08 0.81 7.81 -51.93 -0.41 0.40 16 5 C -0.13 -1.08 5.35 -26.60 -0.14 -1.22 16 6 C -0.12 -0.97 5.88 -26.69 -0.16 -1.12 16 7 C -0.14 -1.29 6.08 -26.61 -0.16 -1.45 16 8 C 0.07 0.80 5.97 -3.71 -0.02 0.78 16 9 N -0.58 -7.53 2.97 -167.01 -0.50 -8.03 16 10 C 0.51 7.95 7.65 -11.63 -0.09 7.86 16 11 O -0.51 -8.20 12.91 5.50 0.07 -8.13 16 12 C 0.50 8.91 7.57 -11.63 -0.09 8.83 16 13 O -0.49 -9.74 10.69 5.48 0.06 -9.68 16 14 N -0.63 -11.64 5.32 -10.34 -0.05 -11.69 16 15 C 0.13 2.99 6.27 -83.82 -0.53 2.47 16 16 C -0.25 -5.31 9.97 -39.09 -0.39 -5.70 16 17 C -0.10 -2.18 10.01 -39.70 -0.40 -2.58 16 18 C -0.16 -4.02 8.64 -38.83 -0.34 -4.36 16 19 C 0.12 3.14 5.53 -106.85 -0.59 2.55 16 20 C -0.46 -12.32 9.05 -37.74 -0.34 -12.66 16 21 H 0.08 2.05 7.86 -52.48 -0.41 1.63 16 22 C 0.07 1.82 5.29 -17.34 -0.09 1.73 16 23 N -0.81 -20.81 10.86 55.55 0.60 -20.21 16 24 Si 0.91 18.90 29.57 -169.99 -5.03 13.88 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 28 C -0.20 -4.98 8.42 -38.67 -0.33 -5.31 16 29 H 0.09 0.90 7.85 -52.49 -0.41 0.49 16 30 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.49 7.24 -52.49 -0.38 1.11 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.15 2.16 4.33 -54.74 -0.24 1.92 16 40 H 0.41 6.63 8.30 -40.82 -0.34 6.29 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 43 H 0.12 3.20 6.31 -52.48 -0.33 2.87 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 45 H 0.11 2.84 6.31 -52.49 -0.33 2.51 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -28.36 364.13 -9.24 -37.60 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.21 Total: 12.79 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -3.67 Total: -12.01 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.05 Total: -39.93 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.13 Total: -17.81 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.36 -9.24 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453730035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.551 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds