Wall clock time and date at job start Tue Mar 31 2020 15:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99650 * 2 1 4 4 H 1.09000 * 109.70347 * 4.65408 * 3 2 1 5 5 C 1.53204 * 109.58258 * 125.00403 * 3 2 1 6 6 C 1.53043 * 109.33614 * 174.44059 * 5 3 2 7 7 C 1.53046 * 109.53546 * 298.61558 * 6 5 3 8 8 C 1.53194 * 109.31074 * 61.37306 * 7 6 5 9 9 N 1.46931 * 108.77398 * 305.35685 * 8 7 6 10 10 C 1.34771 * 120.63502 * 233.63543 * 9 8 7 11 11 O 1.21350 * 120.00361 * 171.19727 * 10 9 8 12 12 C 1.49361 * 119.99572 * 351.18912 * 10 9 8 13 13 O 1.21373 * 120.00246 * 353.38030 * 12 10 9 14 14 N 1.34779 * 119.99684 * 173.36995 * 12 10 9 15 15 C 1.39742 * 120.00122 * 183.67152 * 14 12 10 16 16 C 1.39335 * 119.95317 * 144.27504 * 15 14 12 17 17 C 1.38469 * 120.42298 * 180.02562 * 16 15 14 18 18 C 1.37692 * 120.32958 * 359.97438 * 17 16 15 19 19 C 1.40745 * 119.89661 * 0.02562 * 18 17 16 20 20 C 1.41406 * 120.21110 * 180.02562 * 19 18 17 21 21 H 1.08007 * 120.00167 * 211.45437 * 20 19 18 22 22 C 1.39938 * 120.00199 * 31.44533 * 20 19 18 23 23 N 1.30830 * 119.99297 * 7.63365 * 22 20 19 24 24 Si 1.86795 * 120.00432 * 187.62450 * 22 20 19 25 25 H 1.48505 * 109.46941 * 94.99918 * 24 22 20 26 26 H 1.48500 * 109.47265 * 214.99701 * 24 22 20 27 27 H 1.48507 * 109.47252 * 335.00236 * 24 22 20 28 28 C 1.38307 * 119.95134 * 324.00253 * 15 14 12 29 29 H 1.07998 * 120.00311 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99713 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00311 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.49307 * 54.47276 * 5 3 2 33 33 H 1.08994 * 109.49453 * 294.40645 * 5 3 2 34 34 H 1.08992 * 109.46169 * 58.63838 * 6 5 3 35 35 H 1.08992 * 109.45716 * 178.61505 * 6 5 3 36 36 H 1.08999 * 109.49306 * 181.31600 * 7 6 5 37 37 H 1.08993 * 109.50158 * 301.41560 * 7 6 5 38 38 H 1.09001 * 109.58820 * 65.14662 * 8 7 6 39 39 H 1.09001 * 109.58327 * 185.43362 * 8 7 6 40 40 H 0.96995 * 119.99885 * 3.67931 * 14 12 10 41 41 H 1.08001 * 119.78973 * 0.02562 * 16 15 14 42 42 H 1.08006 * 119.83997 * 179.97438 * 17 16 15 43 43 H 1.08004 * 120.05650 * 179.97438 * 18 17 16 44 44 H 0.97007 * 119.99432 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.16225 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3614 2.1348 0.0833 5 6 3.0372 1.3359 1.1823 6 6 3.8963 2.5997 1.0985 7 6 4.7109 2.5799 -0.1969 8 6 3.7566 2.5637 -1.3952 9 7 2.8308 1.4324 -1.2473 10 6 2.6881 0.5279 -2.2362 11 8 2.0467 -0.4843 -2.0448 12 6 3.3192 0.7716 -3.5678 13 8 3.8576 1.8346 -3.7989 14 7 3.2911 -0.1890 -4.5127 15 6 3.9474 0.0092 -5.7304 16 6 4.5712 -1.0618 -6.3669 17 6 5.2248 -0.8763 -7.5735 18 6 5.2648 0.3697 -8.1582 19 6 4.6393 1.4612 -7.5271 20 6 4.6759 2.7435 -8.1219 21 1 4.6813 3.6270 -7.5006 22 6 4.7052 2.8679 -9.5154 23 7 4.5484 1.8106 -10.2699 24 14 4.9678 4.5434 -10.2983 25 1 6.4091 4.7254 -10.6064 26 1 4.1783 4.6328 -11.5529 27 1 4.5249 5.6041 -9.3580 28 6 3.9720 1.2671 -6.3048 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.6798 0.4562 1.1473 33 1 2.4754 1.3391 2.1163 34 1 3.2515 3.4784 1.1086 35 1 4.5730 2.6360 1.9522 36 1 5.3398 3.4688 -0.2448 37 1 5.3377 1.6885 -0.2190 38 1 3.1925 3.4959 -1.4258 39 1 4.3287 2.4523 -2.3164 40 1 2.8152 -1.0179 -4.3476 41 1 4.5448 -2.0430 -5.9163 42 1 5.7055 -1.7131 -8.0585 43 1 5.7762 0.5095 -9.0992 44 1 4.5684 1.8969 -11.2359 45 1 3.4847 2.0971 -5.8148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453730035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:40 Heat of formation + Delta-G solvation = -21.321914 kcal Electronic energy + Delta-G solvation = -27821.114554 eV Core-core repulsion = 23996.929674 eV Total energy + Delta-G solvation = -3824.184881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.35947 -40.68273 -38.99778 -38.65470 -36.38625 -35.05103 -34.90178 -33.84331 -31.76879 -30.86890 -30.32516 -27.38213 -27.16343 -25.17842 -24.35701 -23.11941 -22.64506 -21.72183 -20.88004 -20.71670 -19.53754 -18.60295 -17.88881 -17.37912 -17.16275 -16.94603 -16.51664 -16.36524 -15.90230 -15.71638 -15.52222 -14.98304 -14.90039 -14.73775 -14.62675 -14.41472 -14.12606 -13.99784 -13.57134 -13.31446 -13.05787 -12.99157 -12.86933 -12.77373 -12.54591 -12.19007 -12.10798 -11.93907 -11.85853 -11.69909 -11.49131 -11.41107 -11.22722 -10.94772 -10.57500 -9.91137 -9.54244 -9.36809 -8.85234 -8.55799 -6.39794 0.11569 0.90116 0.95974 1.13651 1.38636 1.49094 1.52842 1.65462 2.06361 2.22935 2.45567 2.76502 3.19379 3.63774 3.68418 3.86092 3.90863 4.04014 4.14892 4.23458 4.42654 4.43756 4.56300 4.59435 4.71347 4.82347 4.85753 4.97196 5.00001 5.03850 5.08588 5.08884 5.11019 5.13747 5.22074 5.29957 5.37807 5.40618 5.65665 5.72214 5.77586 5.87037 5.97768 6.03102 6.09400 6.26908 6.28978 6.64368 6.69763 6.88787 6.96976 7.00631 8.39395 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002992 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.996967 B = 9357.261503 C =10182.614651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C 0.163 3.837 4 H 0.094 0.906 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.064 3.936 9 N -0.570 5.570 10 C 0.516 3.484 11 O -0.518 6.518 12 C 0.494 3.506 13 O -0.513 6.513 14 N -0.627 5.627 15 C 0.143 3.857 16 C -0.237 4.237 17 C -0.093 4.093 18 C -0.182 4.182 19 C 0.089 3.911 20 C -0.501 4.501 21 H 0.067 0.933 22 C 0.033 3.967 23 N -0.834 5.834 24 Si 0.984 3.016 25 H -0.260 1.260 26 H -0.267 1.267 27 H -0.263 1.263 28 C -0.221 4.221 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.423 0.577 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.287 0.713 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 -0.351 20.052 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.143 4.143 3 C 0.062 3.938 4 H 0.112 0.888 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.169 4.169 8 C -0.057 4.057 9 N -0.303 5.303 10 C 0.298 3.702 11 O -0.395 6.395 12 C 0.277 3.723 13 O -0.390 6.390 14 N -0.273 5.273 15 C 0.050 3.950 16 C -0.258 4.258 17 C -0.112 4.112 18 C -0.202 4.202 19 C 0.087 3.913 20 C -0.531 4.531 21 H 0.086 0.914 22 C -0.180 4.180 23 N -0.461 5.461 24 Si 0.805 3.195 25 H -0.185 1.185 26 H -0.191 1.191 27 H -0.187 1.187 28 C -0.242 4.242 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.134 0.866 40 H 0.262 0.738 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.881 -0.199 19.811 20.020 hybrid contribution -0.213 0.205 -0.784 0.838 sum -3.094 0.006 19.027 19.277 Atomic orbital electron populations 1.23713 0.95418 1.02201 1.02961 1.22687 0.96203 0.96977 0.98439 1.20863 0.93033 0.96938 0.82932 0.88797 1.21929 0.97660 0.99145 0.97083 1.21562 0.98798 0.97666 0.97425 1.21933 0.97713 1.03125 0.94149 1.22903 0.92188 0.87847 1.02791 1.48234 1.41535 1.25788 1.14768 1.19773 0.81623 0.84017 0.84834 1.90731 1.41559 1.26540 1.80680 1.20671 0.80834 0.84514 0.86313 1.90566 1.43957 1.24866 1.79643 1.43053 1.50964 1.20139 1.13137 1.17538 0.97157 0.94971 0.85321 1.20524 1.08197 0.97711 0.99358 1.20852 0.98752 0.96670 0.94947 1.21415 1.03863 0.93327 1.01561 1.17827 0.88553 0.94291 0.90672 1.19745 1.47607 0.93255 0.92499 0.91445 1.26680 0.91446 1.02488 0.97359 1.69835 1.37015 1.32411 1.06859 0.85159 0.79392 0.77101 0.77831 1.18465 1.19102 1.18737 1.21149 1.07628 0.95917 0.99525 0.88157 0.88039 0.87720 0.92001 0.88282 0.90611 0.89708 0.89042 0.92474 0.90359 0.86581 0.73819 0.85214 0.85665 0.87562 0.90269 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.12 14.31 67.78 0.97 -3.15 16 2 C -0.12 -2.71 5.77 25.65 0.15 -2.56 16 3 C 0.16 3.18 3.24 44.22 0.14 3.33 16 4 H 0.09 1.62 7.81 -2.39 -0.02 1.60 16 5 C -0.12 -1.73 5.35 30.68 0.16 -1.57 16 6 C -0.12 -1.49 5.88 30.62 0.18 -1.31 16 7 C -0.13 -2.28 6.08 30.67 0.19 -2.09 16 8 C 0.06 1.50 5.97 86.36 0.52 2.02 16 9 N -0.57 -14.29 2.97 -800.66 -2.38 -16.67 16 10 C 0.52 15.79 7.65 87.24 0.67 16.45 16 11 O -0.52 -16.28 12.91 -3.25 -0.04 -16.32 16 12 C 0.49 17.91 7.57 87.24 0.66 18.57 16 13 O -0.51 -21.08 10.69 -3.32 -0.04 -21.12 16 14 N -0.63 -23.09 5.32 -304.97 -1.62 -24.71 16 15 C 0.14 6.35 6.27 38.16 0.24 6.59 16 16 C -0.24 -9.89 9.97 22.59 0.23 -9.66 16 17 C -0.09 -4.18 10.01 22.20 0.22 -3.96 16 18 C -0.18 -9.56 8.64 22.75 0.20 -9.37 16 19 C 0.09 4.98 5.53 -21.31 -0.12 4.86 16 20 C -0.50 -28.18 9.05 23.46 0.21 -27.96 16 21 H 0.07 3.76 7.86 -2.91 -0.02 3.74 16 22 C 0.03 1.73 5.29 85.25 0.45 2.18 16 23 N -0.83 -44.23 10.86 21.82 0.24 -44.00 16 24 Si 0.98 39.51 29.57 68.60 2.03 41.54 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 27 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 28 C -0.22 -11.49 8.42 22.86 0.19 -11.29 16 29 H 0.10 1.78 7.85 -2.91 -0.02 1.76 16 30 H 0.10 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.10 2.56 7.24 -2.91 -0.02 2.54 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.12 3.54 4.33 -46.84 -0.20 3.34 16 40 H 0.42 13.25 8.30 -92.71 -0.77 12.48 16 41 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.11 5.83 6.31 -2.91 -0.02 5.81 16 44 H 0.29 13.73 8.30 -92.70 -0.77 12.96 16 45 H 0.10 5.21 6.31 -2.91 -0.02 5.19 16 Total: -1.00 -63.91 364.13 3.49 -60.41 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: 0.05 Total: 39.79 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 5.26 Total: -18.93 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -3.77 Total: -85.38 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.08 Total: -37.44 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -63.91 3.49 -60.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453730035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.093 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds