Wall clock time and date at job start Tue Mar 31 2020 15:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50692 * 120.00084 * 2 1 4 4 H 1.09001 * 109.58510 * 354.00557 * 3 2 1 5 5 C 1.53192 * 109.58734 * 233.72665 * 3 2 1 6 6 C 1.53044 * 109.31511 * 185.57780 * 5 3 2 7 7 C 1.53040 * 109.53676 * 61.36091 * 6 5 3 8 8 C 1.53186 * 109.31523 * 298.63740 * 7 6 5 9 9 N 1.46928 * 108.89408 * 54.56261 * 8 7 6 10 10 C 1.34775 * 120.62976 * 126.46345 * 9 8 7 11 11 O 1.21360 * 120.00214 * 188.39748 * 10 9 8 12 12 C 1.49358 * 120.00065 * 8.39552 * 10 9 8 13 13 O 1.21375 * 119.99784 * 6.93432 * 12 10 9 14 14 N 1.34775 * 119.99887 * 186.92289 * 12 10 9 15 15 C 1.39740 * 119.99949 * 181.89014 * 14 12 10 16 16 C 1.39351 * 119.95221 * 320.36538 * 15 14 12 17 17 C 1.38467 * 120.42075 * 179.71992 * 16 15 14 18 18 C 1.37699 * 120.33124 * 0.55623 * 17 16 15 19 19 C 1.40740 * 119.89318 * 359.72377 * 18 17 16 20 20 C 1.41410 * 120.20648 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00295 * 173.65216 * 20 19 18 22 22 C 1.39929 * 120.00066 * 353.65982 * 20 19 18 23 23 N 1.30828 * 119.99710 * 321.97281 * 22 20 19 24 24 Si 1.86798 * 120.00365 * 141.97504 * 22 20 19 25 25 H 1.48505 * 109.46872 * 94.99481 * 24 22 20 26 26 H 1.48496 * 109.46997 * 214.99428 * 24 22 20 27 27 H 1.48495 * 109.47277 * 334.99946 * 24 22 20 28 28 C 1.38298 * 119.95516 * 140.63950 * 15 14 12 29 29 H 1.08004 * 120.00124 * 185.01939 * 1 2 3 30 30 H 1.07999 * 120.00202 * 5.01732 * 1 2 3 31 31 H 1.08004 * 119.99995 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.50175 * 65.62281 * 5 3 2 33 33 H 1.08998 * 109.50031 * 305.53045 * 5 3 2 34 34 H 1.09006 * 109.45757 * 301.34753 * 6 5 3 35 35 H 1.08994 * 109.46171 * 181.38559 * 6 5 3 36 36 H 1.09005 * 109.49625 * 178.68167 * 7 6 5 37 37 H 1.09000 * 109.52189 * 58.61041 * 7 6 5 38 38 H 1.09001 * 109.58490 * 174.42143 * 8 7 6 39 39 H 1.09003 * 109.58850 * 294.70656 * 8 7 6 40 40 H 0.97002 * 120.00406 * 1.89279 * 14 12 10 41 41 H 1.07999 * 119.78912 * 0.02562 * 16 15 14 42 42 H 1.08005 * 119.83647 * 180.30241 * 17 16 15 43 43 H 1.07999 * 120.05338 * 179.74378 * 18 17 16 44 44 H 0.96997 * 120.00264 * 180.02562 * 23 22 20 45 45 H 1.07998 * 120.16327 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3617 2.1321 -0.1072 5 6 3.0597 1.3228 -1.1636 6 6 3.9172 2.5875 -1.0765 7 6 4.7061 2.5817 0.2349 8 6 3.7285 2.5782 1.4143 9 7 2.8032 1.4471 1.2619 10 6 2.6389 0.5552 2.2588 11 8 1.9928 -0.4545 2.0694 12 6 3.2520 0.8094 3.5968 13 8 3.7900 1.8731 3.8256 14 7 3.2076 -0.1423 4.5502 15 6 3.7462 0.1099 5.8147 16 6 4.9384 0.8215 5.9339 17 6 5.4777 1.0818 7.1823 18 6 4.8473 0.6301 8.3201 19 6 3.6456 -0.0950 8.2153 20 6 2.9929 -0.5625 9.3794 21 1 2.0213 -1.0280 9.3037 22 6 3.6057 -0.4217 10.6294 23 7 4.8983 -0.5864 10.7465 24 14 2.5783 0.0011 12.1311 25 1 2.2109 -1.2472 12.8469 26 1 3.3628 0.8784 13.0366 27 1 1.3443 0.7079 11.7036 28 6 3.0984 -0.3520 6.9459 29 1 -0.5400 -0.9317 0.0818 30 1 -0.5400 0.9317 -0.0818 31 1 1.8500 -0.9353 -0.0004 32 1 2.5161 1.3162 -2.1083 33 1 3.7014 0.4436 -1.1066 34 1 3.2728 3.4661 -1.1086 35 1 4.6104 2.6149 -1.9172 36 1 5.3342 3.4711 0.2856 37 1 5.3327 1.6909 0.2790 38 1 4.2821 2.4742 2.3474 39 1 3.1658 3.5117 1.4253 40 1 2.8019 -1.0023 4.3586 41 1 5.4423 1.1765 5.0471 42 1 6.3997 1.6385 7.2640 43 1 5.2741 0.8322 9.2914 44 1 5.3231 -0.4892 11.6130 45 1 2.1765 -0.9071 6.8546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453730036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:46 Heat of formation + Delta-G solvation = -21.175462 kcal Electronic energy + Delta-G solvation = -27609.836812 eV Core-core repulsion = 23785.658282 eV Total energy + Delta-G solvation = -3824.178530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.34201 -40.64314 -38.99760 -38.64891 -36.43174 -35.06404 -35.01008 -33.84535 -31.86314 -30.86588 -30.32974 -27.41455 -27.11582 -25.17677 -24.34052 -23.02049 -22.69970 -21.78765 -20.87223 -20.71385 -19.55315 -18.68096 -17.87184 -17.35689 -17.18472 -16.83215 -16.60262 -16.39042 -15.88050 -15.72946 -15.54037 -15.05445 -14.95376 -14.73360 -14.59775 -14.41211 -14.13787 -14.07719 -13.56675 -13.31710 -13.23796 -12.93415 -12.91009 -12.57856 -12.53306 -12.25783 -12.05552 -11.96300 -11.85593 -11.70874 -11.57853 -11.52119 -11.13610 -10.66058 -10.64324 -9.90572 -9.59703 -9.50914 -8.91943 -8.86196 -6.31760 0.12558 0.91542 0.98182 1.10134 1.37388 1.47590 1.59340 1.67502 2.04914 2.17062 2.47553 2.57129 3.20171 3.64291 3.69037 3.86710 3.90949 4.05041 4.15076 4.24763 4.41091 4.43802 4.58437 4.63132 4.76078 4.83152 4.86637 4.97503 4.99950 5.00348 5.02799 5.08451 5.13541 5.15251 5.23017 5.28983 5.37702 5.41481 5.66405 5.70226 5.77209 5.87796 5.97225 6.02183 6.08928 6.17764 6.37127 6.61769 6.66431 6.85136 6.88645 7.03059 8.10562 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.002617 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.592099 B =10694.840700 C =11496.986214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C 0.164 3.836 4 H 0.096 0.904 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.063 3.937 9 N -0.570 5.570 10 C 0.514 3.486 11 O -0.520 6.520 12 C 0.498 3.502 13 O -0.512 6.512 14 N -0.631 5.631 15 C 0.162 3.838 16 C -0.248 4.248 17 C -0.085 4.085 18 C -0.223 4.223 19 C 0.093 3.907 20 C -0.497 4.497 21 H 0.080 0.920 22 C 0.054 3.946 23 N -0.781 5.781 24 Si 0.973 3.027 25 H -0.256 1.256 26 H -0.261 1.261 27 H -0.261 1.261 28 C -0.269 4.269 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.420 0.580 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.297 0.703 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 5.480 -19.681 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.142 4.142 3 C 0.063 3.937 4 H 0.113 0.887 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.169 4.169 8 C -0.057 4.057 9 N -0.303 5.303 10 C 0.295 3.705 11 O -0.397 6.397 12 C 0.281 3.719 13 O -0.389 6.389 14 N -0.276 5.276 15 C 0.070 3.930 16 C -0.269 4.269 17 C -0.104 4.104 18 C -0.243 4.243 19 C 0.090 3.910 20 C -0.524 4.524 21 H 0.098 0.902 22 C -0.168 4.168 23 N -0.403 5.403 24 Si 0.792 3.208 25 H -0.181 1.181 26 H -0.185 1.185 27 H -0.185 1.185 28 C -0.290 4.290 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.258 0.742 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.108 0.892 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.403 5.679 -19.529 20.479 hybrid contribution -0.435 -0.543 0.884 1.125 sum -2.838 5.135 -18.644 19.546 Atomic orbital electron populations 1.23706 0.95462 1.02290 1.02960 1.22669 0.96223 0.97010 0.98294 1.20795 0.93483 0.96760 0.82658 0.88669 1.21940 0.97491 0.99210 0.97288 1.21564 0.98949 0.97584 0.97382 1.21934 0.97622 1.03193 0.94169 1.22940 0.91995 0.87767 1.03033 1.48219 1.42199 1.26350 1.13483 1.19821 0.81697 0.83961 0.84976 1.90749 1.41237 1.26648 1.81061 1.20584 0.80686 0.84274 0.86330 1.90518 1.43609 1.24987 1.79829 1.43138 1.56890 1.17404 1.10188 1.17425 0.93121 0.99789 0.82667 1.20339 0.98026 1.11571 0.96964 1.20774 0.98726 0.98528 0.92368 1.21413 0.99373 1.05682 0.97812 1.17646 0.91473 0.89825 0.92054 1.19772 1.04436 1.36520 0.91626 0.90226 1.26854 0.95777 0.90423 1.03753 1.69955 1.13297 1.28444 1.28647 0.85356 0.79499 0.79743 0.76205 1.18054 1.18539 1.18491 1.20682 1.03371 1.13718 0.91246 0.88324 0.87914 0.88111 0.88358 0.92131 0.90523 0.89783 0.88811 0.92548 0.86272 0.90175 0.74190 0.87464 0.86859 0.87234 0.89185 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.26 14.27 67.78 0.97 -3.29 16 2 C -0.12 -2.73 5.73 25.65 0.15 -2.58 16 3 C 0.16 3.14 3.23 44.22 0.14 3.28 16 4 H 0.10 1.58 7.80 -2.39 -0.02 1.56 16 5 C -0.12 -1.70 5.35 30.67 0.16 -1.53 16 6 C -0.12 -1.38 5.88 30.62 0.18 -1.20 16 7 C -0.13 -2.07 6.08 30.67 0.19 -1.88 16 8 C 0.06 1.38 5.98 86.36 0.52 1.89 16 9 N -0.57 -13.83 2.98 -800.79 -2.39 -16.21 16 10 C 0.51 15.67 7.66 87.24 0.67 16.33 16 11 O -0.52 -16.79 12.93 -3.28 -0.04 -16.84 16 12 C 0.50 17.76 7.53 87.24 0.66 18.42 16 13 O -0.51 -19.69 10.99 -3.32 -0.04 -19.72 16 14 N -0.63 -24.06 5.30 -304.98 -1.62 -25.68 16 15 C 0.16 7.46 6.18 38.16 0.24 7.70 16 16 C -0.25 -11.60 8.67 22.59 0.20 -11.41 16 17 C -0.09 -4.10 10.01 22.20 0.22 -3.88 16 18 C -0.22 -11.85 8.94 22.75 0.20 -11.65 16 19 C 0.09 5.06 5.70 -21.31 -0.12 4.94 16 20 C -0.50 -26.45 8.95 23.46 0.21 -26.24 16 21 H 0.08 4.12 8.05 -2.91 -0.02 4.09 16 22 C 0.05 2.62 4.86 85.25 0.41 3.04 16 23 N -0.78 -38.90 11.21 21.82 0.24 -38.66 16 24 Si 0.97 36.51 29.68 68.60 2.04 38.54 16 25 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 26 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 27 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 28 C -0.27 -13.43 9.71 22.86 0.22 -13.21 16 29 H 0.10 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.10 1.81 7.85 -2.91 -0.02 1.79 16 31 H 0.10 2.53 7.34 -2.91 -0.02 2.51 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.12 3.31 4.31 -48.45 -0.21 3.10 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.42 14.38 8.32 -92.71 -0.77 13.61 16 41 H 0.11 4.76 6.64 -2.91 -0.02 4.74 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.11 5.93 5.73 -2.91 -0.02 5.91 16 44 H 0.30 13.02 8.30 -92.71 -0.77 12.25 16 45 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -61.17 364.66 3.45 -57.72 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: 0.04 Total: 42.12 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 5.21 Total: -21.28 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.76 Total: -80.55 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.08 Total: -36.56 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.04 Total: 38.54 kcal Total: -61.17 3.45 -57.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453730036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.543 kcal (2) G-P(sol) polarization free energy of solvation -61.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds