Wall clock time and date at job start Tue Mar 31 2020 16:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99635 * 2 1 4 4 N 1.46498 * 109.47314 * 125.00481 * 3 2 1 5 5 C 1.46506 * 119.99359 * 269.99758 * 4 3 2 6 6 C 1.50695 * 109.47140 * 269.99357 * 5 4 3 7 7 H 1.07999 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00090 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99753 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00314 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46793 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46984 * 119.99884 * 10 8 6 13 13 H 1.48499 * 109.47356 * 240.00295 * 10 8 6 14 14 C 1.34773 * 120.00535 * 89.99242 * 4 3 2 15 15 O 1.21572 * 120.00133 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99883 * 0.02562 * 14 4 3 17 17 C 1.39297 * 119.99878 * 184.53536 * 16 14 4 18 18 C 1.39236 * 119.83964 * 324.80225 * 17 16 14 19 19 C 1.36600 * 119.88388 * 180.11427 * 18 17 16 20 20 C 1.40023 * 119.87734 * 0.02562 * 19 18 17 21 21 C 1.39816 * 120.26153 * 359.82329 * 20 19 18 22 22 C 1.37027 * 119.33498 * 0.23693 * 21 20 19 23 23 C 1.50438 * 121.59460 * 180.28945 * 21 20 19 24 24 C 1.52621 * 111.23652 * 337.37580 * 23 21 20 25 25 C 1.53445 * 109.36134 * 54.55203 * 24 23 21 26 26 C 1.47272 * 119.64452 * 179.53250 * 20 19 18 27 27 O 1.21298 * 121.15648 * 348.79988 * 26 20 19 28 28 H 1.08001 * 119.99325 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00011 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00011 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47600 * 5.00118 * 3 2 1 32 32 H 1.09010 * 109.47062 * 245.00048 * 3 2 1 33 33 H 1.08999 * 109.47562 * 30.00154 * 5 4 3 34 34 H 1.09005 * 109.46692 * 150.00015 * 5 4 3 35 35 H 0.97009 * 119.99773 * 180.02562 * 9 8 6 36 36 H 0.97003 * 119.99632 * 4.53315 * 16 14 4 37 37 H 1.08001 * 120.06117 * 0.12870 * 18 17 16 38 38 H 1.08004 * 120.06293 * 180.02562 * 19 18 17 39 39 H 1.07996 * 119.83660 * 179.88355 * 22 21 20 40 40 H 1.08996 * 109.12375 * 97.82932 * 23 21 20 41 41 H 1.08999 * 109.12184 * 216.92336 * 23 21 20 42 42 H 1.09001 * 109.49149 * 174.51648 * 24 23 21 43 43 H 1.09005 * 109.49589 * 294.58156 * 24 23 21 44 44 H 1.08993 * 109.87041 * 176.52123 * 25 24 23 45 45 H 1.08996 * 109.86878 * 55.46533 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5193 4.0666 3.6085 9 7 1.9607 3.4656 4.6363 10 14 2.8724 5.8997 3.6771 11 1 3.4992 6.3310 2.4019 12 1 1.6018 6.6412 3.8793 13 1 3.7963 6.1840 4.8044 14 6 4.2497 0.8662 0.9823 15 8 5.0215 0.8881 1.9214 16 7 4.6500 0.3762 -0.2077 17 6 5.9154 -0.1915 -0.3371 18 6 6.9861 0.3310 0.3836 19 6 8.2279 -0.2235 0.2556 20 6 8.4196 -1.3149 -0.6004 21 6 7.3442 -1.8419 -1.3219 22 6 6.1034 -1.2765 -1.1863 23 6 7.5148 -3.0176 -2.2449 24 6 8.9655 -3.1590 -2.6976 25 6 9.8783 -3.2276 -1.4662 26 6 9.7627 -1.9022 -0.7424 27 8 10.7422 -1.3441 -0.2948 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9315 33 1 1.4887 1.6967 2.5459 34 1 3.0990 1.3604 3.2259 35 1 1.7317 3.9743 5.4300 36 1 4.0567 0.4188 -0.9740 37 1 6.8350 1.1730 1.0429 38 1 9.0604 0.1791 0.8136 39 1 5.2674 -1.6759 -1.7413 40 1 7.2128 -3.9266 -1.7248 41 1 6.8794 -2.8799 -3.1197 42 1 9.0763 -4.0713 -3.2837 43 1 9.2417 -2.2988 -3.3076 44 1 10.9098 -3.3905 -1.7783 45 1 9.5563 -4.0370 -0.8110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455715953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:17 Heat of formation + Delta-G solvation = -16.805644 kcal Electronic energy + Delta-G solvation = -27331.062234 eV Core-core repulsion = 23507.073194 eV Total energy + Delta-G solvation = -3823.989040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.81782 -39.85739 -38.12999 -36.26734 -35.57218 -34.19423 -33.20338 -32.16182 -31.40152 -29.48407 -28.18759 -27.42715 -25.62373 -23.71095 -23.39317 -22.33201 -21.65173 -20.20603 -19.62151 -19.03755 -17.87682 -16.95900 -16.70939 -16.48957 -16.02545 -15.36299 -15.09884 -14.92506 -14.61708 -14.45768 -14.36574 -14.09478 -13.83647 -13.62544 -13.49486 -13.29149 -12.92919 -12.69958 -12.42438 -12.19153 -12.03960 -11.85681 -11.44581 -11.36301 -11.34111 -11.17064 -11.03259 -10.92735 -10.66113 -10.24084 -10.10055 -9.73205 -9.69591 -9.32918 -9.30541 -8.82291 -8.47717 -8.11944 -7.72488 -6.08535 -4.13574 0.67231 1.42730 2.31063 2.35428 3.08725 3.27437 3.35652 3.39354 3.57602 3.91415 3.98685 4.28112 4.39266 4.44889 4.48696 4.64676 4.81661 5.00990 5.07583 5.12549 5.25259 5.25724 5.27950 5.33860 5.36828 5.39498 5.48338 5.51192 5.67583 5.77389 5.81458 5.87998 5.98867 6.05494 6.18946 6.34346 6.49206 6.64675 6.66886 6.71149 6.83830 7.10842 7.28151 7.41322 7.47855 7.56128 7.88468 8.17131 8.42817 8.86578 9.09479 9.51946 10.99420 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.003015 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.803815 B = 9284.200588 C =10798.348965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.136 3.864 4 N -0.600 5.600 5 C 0.261 3.739 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.697 3.303 15 O -0.561 6.561 16 N -0.695 5.695 17 C 0.222 3.778 18 C -0.140 4.140 19 C -0.036 4.036 20 C -0.206 4.206 21 C -0.011 4.011 22 C -0.176 4.176 23 C -0.086 4.086 24 C -0.112 4.112 25 C -0.165 4.165 26 C 0.402 3.598 27 O -0.463 6.463 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.404 0.596 37 H 0.152 0.848 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -14.220 -17.706 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.334 5.334 5 C 0.142 3.858 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.399 3.601 15 O -0.437 6.437 16 N -0.343 5.343 17 C 0.124 3.876 18 C -0.161 4.161 19 C -0.055 4.055 20 C -0.208 4.208 21 C -0.012 4.012 22 C -0.197 4.197 23 C -0.123 4.123 24 C -0.150 4.150 25 C -0.203 4.203 26 C 0.281 3.719 27 O -0.340 6.340 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.241 0.759 37 H 0.170 0.830 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.240 -13.798 -16.505 22.399 hybrid contribution -0.472 1.008 -0.188 1.129 sum 5.768 -12.789 -16.693 21.806 Atomic orbital electron populations 1.23841 0.95798 1.01894 0.99907 1.23425 0.96522 0.98864 1.00479 1.20552 0.93222 0.95844 0.89165 1.47623 1.08663 1.62733 1.14339 1.19274 0.95346 0.93668 0.77507 1.21468 1.40656 0.93281 1.01315 0.92380 1.24925 0.95007 0.98797 0.95290 1.69944 1.41993 1.36117 1.05158 0.86445 0.77918 0.84883 0.78180 1.19814 1.20973 1.20826 1.15956 0.83385 0.78677 0.82067 1.90908 1.52573 1.61000 1.39212 1.42991 1.15598 1.63138 1.12585 1.17797 0.84355 0.90781 0.94680 1.21267 0.90695 1.02400 1.01718 1.21049 0.97230 0.92625 0.94624 1.20123 0.94888 1.01435 1.04328 1.19444 0.91871 0.94881 0.95031 1.20489 0.97704 0.96847 1.04650 1.20483 0.97329 0.96172 0.98277 1.21486 0.93683 1.03072 0.96719 1.22307 1.02202 0.97265 0.98480 1.22592 0.87509 0.86456 0.75301 1.90532 1.40582 1.62230 1.40611 0.88678 0.88164 0.87775 0.88864 0.91549 0.94651 0.93659 0.92711 0.75888 0.83042 0.84928 0.85409 0.89733 0.89953 0.90310 0.91169 0.89080 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 14.32 29.01 0.42 -1.68 16 2 C -0.17 -2.26 9.85 -36.03 -0.35 -2.61 16 3 C 0.14 2.04 5.65 -5.20 -0.03 2.01 16 4 N -0.60 -12.09 2.44 -182.19 -0.44 -12.53 16 5 C 0.26 6.61 5.16 -5.19 -0.03 6.59 16 6 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 10 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.70 14.11 8.11 -86.92 -0.71 13.41 16 15 O -0.56 -13.77 13.33 5.30 0.07 -13.70 16 16 N -0.69 -10.50 5.18 -14.25 -0.07 -10.57 16 17 C 0.22 3.28 6.29 -83.79 -0.53 2.75 16 18 C -0.14 -2.32 8.63 -39.80 -0.34 -2.66 16 19 C -0.04 -0.54 9.55 -39.50 -0.38 -0.92 16 20 C -0.21 -2.67 5.82 -104.97 -0.61 -3.28 16 21 C -0.01 -0.12 5.75 -104.60 -0.60 -0.72 16 22 C -0.18 -2.01 9.50 -39.71 -0.38 -2.38 16 23 C -0.09 -0.59 5.69 -28.20 -0.16 -0.75 16 24 C -0.11 -0.70 5.90 -26.69 -0.16 -0.86 16 25 C -0.16 -1.31 6.18 -27.28 -0.17 -1.48 16 26 C 0.40 4.96 6.88 -30.27 -0.21 4.75 16 27 O -0.46 -7.22 17.25 5.54 0.10 -7.12 16 28 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16 30 H 0.10 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.09 1.46 7.72 -51.93 -0.40 1.05 16 32 H 0.07 0.79 6.30 -51.92 -0.33 0.46 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.40 4.73 6.51 -40.82 -0.27 4.47 16 37 H 0.15 2.93 6.21 -52.49 -0.33 2.60 16 38 H 0.13 1.95 7.71 -52.48 -0.40 1.55 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -33.98 377.34 -9.89 -43.87 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.29 Total: 4.30 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -4.65 Total: -1.10 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.22 Total: -48.51 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.17 Total: -20.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.98 -9.89 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455715953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.065 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds