Wall clock time and date at job start Tue Mar 31 2020 16:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99635 * 2 1 4 4 N 1.46498 * 109.47314 * 125.00481 * 3 2 1 5 5 C 1.46506 * 119.99359 * 269.99758 * 4 3 2 6 6 C 1.50695 * 109.47140 * 269.99357 * 5 4 3 7 7 H 1.07999 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00090 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99753 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00314 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46793 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46984 * 119.99884 * 10 8 6 13 13 H 1.48499 * 109.47356 * 240.00295 * 10 8 6 14 14 C 1.34773 * 120.00535 * 89.99242 * 4 3 2 15 15 O 1.21572 * 120.00133 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99883 * 0.02562 * 14 4 3 17 17 C 1.39297 * 119.99878 * 184.53536 * 16 14 4 18 18 C 1.39236 * 119.83964 * 324.80225 * 17 16 14 19 19 C 1.36600 * 119.88388 * 180.11427 * 18 17 16 20 20 C 1.40023 * 119.87734 * 0.02562 * 19 18 17 21 21 C 1.39816 * 120.26153 * 359.82329 * 20 19 18 22 22 C 1.37027 * 119.33498 * 0.23693 * 21 20 19 23 23 C 1.50438 * 121.59460 * 180.28945 * 21 20 19 24 24 C 1.52621 * 111.23652 * 337.37580 * 23 21 20 25 25 C 1.53445 * 109.36134 * 54.55203 * 24 23 21 26 26 C 1.47272 * 119.64452 * 179.53250 * 20 19 18 27 27 O 1.21298 * 121.15648 * 348.79988 * 26 20 19 28 28 H 1.08001 * 119.99325 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00011 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00011 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47600 * 5.00118 * 3 2 1 32 32 H 1.09010 * 109.47062 * 245.00048 * 3 2 1 33 33 H 1.08999 * 109.47562 * 30.00154 * 5 4 3 34 34 H 1.09005 * 109.46692 * 150.00015 * 5 4 3 35 35 H 0.97009 * 119.99773 * 180.02562 * 9 8 6 36 36 H 0.97003 * 119.99632 * 4.53315 * 16 14 4 37 37 H 1.08001 * 120.06117 * 0.12870 * 18 17 16 38 38 H 1.08004 * 120.06293 * 180.02562 * 19 18 17 39 39 H 1.07996 * 119.83660 * 179.88355 * 22 21 20 40 40 H 1.08996 * 109.12375 * 97.82932 * 23 21 20 41 41 H 1.08999 * 109.12184 * 216.92336 * 23 21 20 42 42 H 1.09001 * 109.49149 * 174.51648 * 24 23 21 43 43 H 1.09005 * 109.49589 * 294.58156 * 24 23 21 44 44 H 1.08993 * 109.87041 * 176.52123 * 25 24 23 45 45 H 1.08996 * 109.86878 * 55.46533 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5193 4.0666 3.6085 9 7 1.9607 3.4656 4.6363 10 14 2.8724 5.8997 3.6771 11 1 3.4992 6.3310 2.4019 12 1 1.6018 6.6412 3.8793 13 1 3.7963 6.1840 4.8044 14 6 4.2497 0.8662 0.9823 15 8 5.0215 0.8881 1.9214 16 7 4.6500 0.3762 -0.2077 17 6 5.9154 -0.1915 -0.3371 18 6 6.9861 0.3310 0.3836 19 6 8.2279 -0.2235 0.2556 20 6 8.4196 -1.3149 -0.6004 21 6 7.3442 -1.8419 -1.3219 22 6 6.1034 -1.2765 -1.1863 23 6 7.5148 -3.0176 -2.2449 24 6 8.9655 -3.1590 -2.6976 25 6 9.8783 -3.2276 -1.4662 26 6 9.7627 -1.9022 -0.7424 27 8 10.7422 -1.3441 -0.2948 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9315 33 1 1.4887 1.6967 2.5459 34 1 3.0990 1.3604 3.2259 35 1 1.7317 3.9743 5.4300 36 1 4.0567 0.4188 -0.9740 37 1 6.8350 1.1730 1.0429 38 1 9.0604 0.1791 0.8136 39 1 5.2674 -1.6759 -1.7413 40 1 7.2128 -3.9266 -1.7248 41 1 6.8794 -2.8799 -3.1197 42 1 9.0763 -4.0713 -3.2837 43 1 9.2417 -2.2988 -3.3076 44 1 10.9098 -3.3905 -1.7783 45 1 9.5563 -4.0370 -0.8110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455715953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:15 Heat of formation + Delta-G solvation = -37.042047 kcal Electronic energy + Delta-G solvation = -27331.939751 eV Core-core repulsion = 23507.073194 eV Total energy + Delta-G solvation = -3824.866557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02172 -41.08575 -39.29086 -37.50311 -36.75401 -35.50056 -34.89913 -33.72732 -32.36180 -30.71819 -29.36310 -28.78872 -26.99624 -25.36458 -24.29360 -23.66283 -22.60274 -21.43209 -20.77347 -20.09107 -19.26914 -18.60396 -18.19801 -17.67909 -17.08053 -16.85980 -16.40687 -16.13133 -15.94097 -15.71920 -15.43906 -15.24637 -14.96570 -14.64246 -14.54198 -14.35051 -14.17980 -14.14900 -13.85284 -13.34119 -13.24081 -13.09730 -12.89422 -12.87018 -12.62093 -12.28534 -12.22615 -12.16777 -11.96049 -11.75976 -11.68479 -11.40676 -11.04462 -10.66203 -10.54005 -10.34484 -9.84073 -9.64666 -9.10053 -8.23650 -6.38058 -0.39761 0.38401 1.22933 1.32062 1.34771 1.37802 1.48845 1.77596 2.11901 2.37039 2.77106 2.96787 3.06748 3.12716 3.64026 3.78200 3.92211 4.00630 4.12227 4.16797 4.21270 4.27116 4.31302 4.39088 4.46816 4.62076 4.74240 4.81938 4.85243 4.91606 4.96909 5.04791 5.08953 5.16384 5.17262 5.23678 5.31658 5.35566 5.45258 5.49306 5.51966 5.69407 5.72790 5.89876 5.94889 6.01658 6.04074 6.53194 6.70957 6.96140 7.28799 7.55071 8.83205 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.003015 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.803815 B = 9284.200588 C =10798.348965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.187 4.187 3 C 0.132 3.868 4 N -0.605 5.605 5 C 0.281 3.719 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.267 1.267 13 H -0.284 1.284 14 C 0.694 3.306 15 O -0.616 6.616 16 N -0.672 5.672 17 C 0.201 3.799 18 C -0.168 4.168 19 C -0.054 4.054 20 C -0.215 4.215 21 C 0.004 3.996 22 C -0.157 4.157 23 C -0.085 4.085 24 C -0.108 4.108 25 C -0.158 4.158 26 C 0.398 3.602 27 O -0.508 6.508 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.029 0.971 34 H -0.002 1.002 35 H 0.267 0.733 36 H 0.423 0.577 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.171 0.829 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.476 -16.648 -21.522 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.010 3.990 4 N -0.338 5.338 5 C 0.159 3.841 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.790 3.210 11 H -0.193 1.193 12 H -0.193 1.193 13 H -0.210 1.210 14 C 0.396 3.604 15 O -0.495 6.495 16 N -0.322 5.322 17 C 0.104 3.896 18 C -0.188 4.188 19 C -0.073 4.073 20 C -0.217 4.217 21 C 0.003 3.997 22 C -0.178 4.178 23 C -0.121 4.121 24 C -0.145 4.145 25 C -0.195 4.195 26 C 0.280 3.720 27 O -0.387 6.387 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.264 0.736 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.189 0.811 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.320 -16.253 -20.416 26.632 hybrid contribution -0.164 1.689 0.968 1.954 sum 5.156 -14.564 -19.448 24.838 Atomic orbital electron populations 1.24070 0.95497 1.02983 0.97617 1.23294 0.96850 0.97988 1.02458 1.20827 0.92773 0.96998 0.88406 1.47431 1.09682 1.62555 1.14109 1.18651 0.93965 0.92387 0.79058 1.21733 1.40473 0.94483 1.01335 0.92942 1.25800 0.94715 1.03516 0.94882 1.70054 1.42857 1.37956 1.05750 0.85409 0.78216 0.79372 0.78048 1.19294 1.19252 1.21008 1.16131 0.82860 0.78527 0.82920 1.90883 1.54044 1.63035 1.41572 1.42547 1.16012 1.62318 1.11311 1.18005 0.83275 0.92349 0.95958 1.20980 0.92502 1.02504 1.02855 1.20978 0.96239 0.94113 0.95972 1.20446 0.96661 1.00678 1.03957 1.19996 0.90429 0.95258 0.93984 1.20877 0.99313 0.94674 1.02900 1.20682 0.98441 0.94597 0.98426 1.21544 0.92542 1.04669 0.95765 1.22376 1.03699 0.94322 0.99113 1.23331 0.86351 0.87895 0.74447 1.90518 1.41699 1.63882 1.42642 0.86461 0.88226 0.86775 0.89768 0.88191 0.95336 0.98419 0.92399 0.73624 0.87280 0.86553 0.81134 0.87415 0.86949 0.86750 0.91731 0.88169 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 14.32 67.77 0.97 -2.55 16 2 C -0.19 -4.51 9.85 25.64 0.25 -4.26 16 3 C 0.13 3.84 5.65 85.63 0.48 4.33 16 4 N -0.60 -25.16 2.44 -848.58 -2.07 -27.23 16 5 C 0.28 15.01 5.16 85.63 0.44 15.45 16 6 C -0.54 -31.08 9.39 25.60 0.24 -30.84 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.58 5.46 84.65 0.46 1.04 16 9 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 10 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 14 C 0.69 29.34 8.11 179.05 1.45 30.79 16 15 O -0.62 -32.72 13.33 -3.94 -0.05 -32.77 16 16 N -0.67 -20.14 5.18 -317.26 -1.64 -21.79 16 17 C 0.20 5.93 6.29 38.39 0.24 6.17 16 18 C -0.17 -6.04 8.63 22.13 0.19 -5.85 16 19 C -0.05 -1.76 9.55 22.32 0.21 -1.55 16 20 C -0.22 -5.51 5.82 -20.09 -0.12 -5.63 16 21 C 0.00 0.08 5.75 -19.85 -0.11 -0.03 16 22 C -0.16 -3.08 9.50 22.18 0.21 -2.87 16 23 C -0.09 -0.67 5.69 29.64 0.17 -0.50 16 24 C -0.11 -0.79 5.90 30.62 0.18 -0.61 16 25 C -0.16 -1.98 6.18 30.24 0.19 -1.80 16 26 C 0.40 9.57 6.88 28.30 0.19 9.76 16 27 O -0.51 -16.45 17.25 -3.09 -0.05 -16.50 16 28 H 0.12 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.10 2.15 7.84 -2.91 -0.02 2.13 16 30 H 0.11 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.08 2.60 7.72 -2.39 -0.02 2.58 16 32 H 0.10 2.17 6.30 -2.38 -0.02 2.16 16 33 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 34 H 0.00 -0.15 7.42 -2.38 -0.02 -0.16 16 35 H 0.27 15.11 8.31 -92.70 -0.77 14.33 16 36 H 0.42 9.02 6.51 -92.71 -0.60 8.41 16 37 H 0.11 4.82 6.21 -2.91 -0.02 4.80 16 38 H 0.12 3.97 7.71 -2.91 -0.02 3.95 16 39 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.11 0.37 8.10 -2.39 -0.02 0.35 16 42 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -82.56 377.34 4.55 -78.00 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.40 Total: 17.64 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 5.66 Total: 11.06 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -3.43 Total: -104.68 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.11 Total: -49.28 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -82.56 4.55 -78.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455715953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.960 kcal (2) G-P(sol) polarization free energy of solvation -82.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds