Wall clock time and date at job start Tue Mar 31 2020 15:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47029 * 2 1 4 4 C 1.50691 * 109.47035 * 180.02562 * 3 2 1 5 5 O 1.21288 * 120.00368 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00197 * 180.02562 * 4 3 2 7 7 C 1.47056 * 122.49345 * 355.84661 * 6 4 3 8 8 S 1.83563 * 104.97914 * 184.04275 * 7 6 4 9 9 C 1.84246 * 94.86113 * 18.51201 * 8 7 6 10 10 C 1.46127 * 122.50182 * 175.55995 * 6 4 3 11 11 H 1.09003 * 109.47173 * 269.28654 * 10 6 4 12 12 C 1.50700 * 109.47298 * 29.22325 * 10 6 4 13 13 O 1.21282 * 119.99644 * 41.69696 * 12 10 6 14 14 N 1.34774 * 120.00557 * 221.69979 * 12 10 6 15 15 C 1.46493 * 120.00121 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.46943 * 299.99722 * 16 15 14 18 18 C 1.53000 * 109.47277 * 59.99657 * 16 15 14 19 19 C 1.50704 * 109.47342 * 179.97438 * 16 15 14 20 20 H 1.07995 * 119.99779 * 0.02562 * 19 16 15 21 21 C 1.37874 * 120.00069 * 179.97438 * 19 16 15 22 22 N 1.31519 * 120.00041 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 119.99890 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47109 * 90.00602 * 23 21 19 25 25 H 1.48504 * 109.47330 * 210.00333 * 23 21 19 26 26 H 1.48498 * 109.47423 * 330.00665 * 23 21 19 27 27 H 1.08997 * 109.46956 * 299.99096 * 1 2 3 28 28 H 1.09005 * 109.46978 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47482 * 59.99232 * 1 2 3 30 30 H 1.08998 * 109.47482 * 120.00768 * 2 1 3 31 31 H 1.09009 * 109.46682 * 240.00628 * 2 1 3 32 32 H 1.08999 * 109.47110 * 300.00831 * 3 2 1 33 33 H 1.09006 * 109.46434 * 60.00483 * 3 2 1 34 34 H 1.09007 * 110.33979 * 302.91166 * 7 6 4 35 35 H 1.08993 * 110.34246 * 65.16744 * 7 6 4 36 36 H 1.08997 * 111.35226 * 84.48941 * 9 8 7 37 37 H 1.09003 * 111.34816 * 209.17437 * 9 8 7 38 38 H 0.97005 * 119.99720 * 359.97438 * 14 12 10 39 39 H 1.09007 * 109.47093 * 299.99652 * 15 14 12 40 40 H 1.08998 * 109.47565 * 59.99315 * 15 14 12 41 41 H 1.08998 * 109.47042 * 59.99741 * 17 16 15 42 42 H 1.09002 * 109.46995 * 180.02562 * 17 16 15 43 43 H 1.09006 * 109.46650 * 299.99614 * 17 16 15 44 44 H 1.08997 * 109.47066 * 60.00243 * 18 16 15 45 45 H 1.09000 * 109.47482 * 180.02562 * 18 16 15 46 46 H 1.09001 * 109.46751 * 299.99911 * 18 16 15 47 47 H 0.97005 * 119.99773 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2208 2.6098 -0.0002 7 6 3.5445 3.9125 -0.0890 8 16 4.9008 5.1465 -0.1737 9 6 6.1890 3.9284 -0.6751 10 6 5.6776 2.6753 0.0946 11 1 5.9708 2.7435 1.1422 12 6 6.2770 1.4336 -0.5136 13 8 5.8254 0.9854 -1.5461 14 7 7.3147 0.8210 0.0899 15 6 7.8977 -0.3857 -0.5017 16 6 9.0522 -0.8765 0.3741 17 6 10.1215 0.2139 0.4664 18 6 8.5287 -1.1973 1.7755 19 6 9.6516 -2.1183 -0.2341 20 1 9.2495 -2.5173 -1.1536 21 6 10.7139 -2.7444 0.3828 22 7 11.2038 -2.2582 1.5023 23 14 11.4572 -4.2831 -0.3715 24 1 12.5465 -3.9001 -1.3052 25 1 12.0081 -5.1455 0.7046 26 1 10.4079 -5.0272 -1.1137 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 2.9318 3.9608 -0.9893 35 1 2.9323 4.0827 0.7965 36 1 6.1835 3.7660 -1.7529 37 1 7.1771 4.2301 -0.3276 38 1 7.6761 1.1796 0.9156 39 1 7.1358 -1.1625 -0.5679 40 1 8.2710 -0.1572 -1.4999 41 1 9.6878 1.1118 0.9065 42 1 10.9443 -0.1359 1.0900 43 1 10.4946 0.4423 -0.5321 44 1 7.7669 -1.9741 1.7098 45 1 9.3513 -1.5465 2.3996 46 1 8.0950 -0.2993 2.2156 47 1 11.9510 -2.6989 1.9365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457993674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:05 Heat of formation + Delta-G solvation = -71.238565 kcal Electronic energy + Delta-G solvation = -27131.749971 eV Core-core repulsion = 23440.844493 eV Total energy + Delta-G solvation = -3690.905478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69382 -38.67427 -36.62987 -35.97696 -34.53419 -33.24588 -31.73736 -30.63892 -28.15076 -27.56983 -25.78866 -25.69248 -25.11442 -23.70427 -22.02791 -20.57205 -19.30287 -18.68441 -17.79210 -17.38967 -16.91653 -16.04736 -15.74419 -15.51846 -14.97687 -14.81621 -14.56899 -14.45114 -14.28072 -13.67025 -13.51572 -13.35993 -13.01690 -12.89796 -12.76503 -12.53787 -12.48350 -12.14103 -12.07754 -11.89589 -11.35889 -11.35079 -11.17349 -10.95416 -10.91514 -10.81331 -10.67072 -10.34828 -10.17561 -9.77034 -9.60142 -9.58382 -9.28124 -8.96879 -8.75048 -8.40453 -8.24437 -8.19731 -5.99417 -4.09064 1.22424 1.60183 2.33179 2.56653 3.11969 3.30159 3.36976 3.41427 3.67536 4.07820 4.41177 4.44275 4.58973 4.66100 4.68035 4.76933 4.84288 5.04902 5.08241 5.19217 5.25998 5.27345 5.36294 5.37192 5.50489 5.82866 5.87876 5.97638 6.18061 6.28624 6.39985 6.55104 6.83560 6.86646 6.96272 6.97811 7.07195 7.08902 7.39520 7.59193 7.72341 8.01937 8.04500 8.08852 8.18844 8.42112 8.75997 8.91777 9.56474 11.02015 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.003320 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.777026 B = 8431.166812 C = 9876.807891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.132 4.132 4 C 0.519 3.481 5 O -0.488 6.488 6 N -0.613 5.613 7 C 0.156 3.844 8 S -0.260 6.260 9 C -0.062 4.062 10 C 0.112 3.888 11 H 0.100 0.900 12 C 0.522 3.478 13 O -0.530 6.530 14 N -0.709 5.709 15 C 0.138 3.862 16 C 0.056 3.944 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.504 4.504 20 H 0.057 0.943 21 C 0.066 3.934 22 N -0.887 5.887 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.395 0.605 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.080 14.519 0.371 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.172 4.172 4 C 0.306 3.694 5 O -0.359 6.359 6 N -0.352 5.352 7 C -0.078 4.078 8 S -0.033 6.033 9 C -0.211 4.211 10 C 0.004 3.996 11 H 0.118 0.882 12 C 0.303 3.697 13 O -0.406 6.406 14 N -0.360 5.360 15 C 0.016 3.984 16 C 0.056 3.944 17 C -0.188 4.188 18 C -0.186 4.186 19 C -0.543 4.543 20 H 0.075 0.925 21 C -0.135 4.135 22 N -0.525 5.525 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.230 0.770 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.104 0.896 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.920 14.718 -0.042 22.425 hybrid contribution 0.566 -1.587 -0.167 1.693 sum -16.353 13.131 -0.209 20.974 Atomic orbital electron populations 1.21779 0.95418 1.02053 1.01578 1.21310 0.95218 0.94409 1.04041 1.21700 0.90786 1.00577 1.04091 1.20710 0.90423 0.82310 0.75927 1.90853 1.69280 1.29949 1.45866 1.48210 1.04593 1.05808 1.76573 1.23883 0.95755 0.82562 1.05606 1.88197 1.07779 1.16615 1.90738 1.24748 1.00125 0.91722 1.04537 1.21869 0.81592 0.95248 1.00934 0.88220 1.19667 0.80564 0.84101 0.85330 1.90668 1.60556 1.65035 1.24335 1.46130 1.33040 1.29298 1.27517 1.21673 0.96013 0.83915 0.96803 1.18355 0.89735 0.94323 0.92025 1.21832 1.01710 0.95284 0.99977 1.21804 1.00486 0.96987 0.99355 1.20992 1.15190 1.09323 1.08782 0.92484 1.24875 0.96514 0.97295 0.94835 1.69809 1.25361 1.39946 1.17418 0.86576 0.79396 0.83107 0.78831 1.20736 1.21270 1.19899 0.92776 0.92305 0.92741 0.91058 0.90905 0.88974 0.88942 0.88407 0.87751 0.87208 0.85145 0.77026 0.92573 0.92989 0.97568 0.89593 0.95476 0.95431 0.89688 0.97641 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.11 -1.15 5.22 -26.73 -0.14 -1.29 16 3 C -0.13 -1.21 4.68 -27.89 -0.13 -1.34 16 4 C 0.52 7.18 7.23 -10.99 -0.08 7.10 16 5 O -0.49 -9.26 12.74 -18.10 -0.23 -9.49 16 6 N -0.61 -7.34 3.13 -168.71 -0.53 -7.87 16 7 C 0.16 1.28 6.83 60.15 0.41 1.69 16 8 S -0.26 -2.45 23.32 -107.50 -2.51 -4.96 16 9 C -0.06 -0.65 7.05 38.60 0.27 -0.38 16 10 C 0.11 1.46 3.30 -67.84 -0.22 1.23 16 11 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 12 C 0.52 9.27 4.91 -10.99 -0.05 9.22 16 13 O -0.53 -11.47 14.87 -18.09 -0.27 -11.74 16 14 N -0.71 -13.08 4.96 -60.30 -0.30 -13.38 16 15 C 0.14 3.07 4.50 -4.05 -0.02 3.05 16 16 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 17 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 18 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 19 C -0.50 -13.51 8.01 -34.44 -0.28 -13.79 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 22 N -0.89 -23.91 9.35 55.43 0.52 -23.39 16 23 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.07 0.90 8.10 -51.92 -0.42 0.48 16 32 H 0.09 0.68 8.01 -51.93 -0.42 0.26 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.11 1.26 8.11 -51.93 -0.42 0.84 16 37 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.39 6.54 6.08 -40.82 -0.25 6.30 16 39 H 0.06 1.38 8.14 -51.92 -0.42 0.95 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 46 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 47 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -32.34 380.48 -9.91 -42.25 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.87 Total: 4.47 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 0.56 Total: 2.33 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.31 Total: -44.64 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.50 Total: -21.23 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.51 Total: -4.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.34 -9.91 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.984 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds