Wall clock time and date at job start Tue Mar 31 2020 15:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47029 * 2 1 4 4 C 1.50691 * 109.47035 * 180.02562 * 3 2 1 5 5 O 1.21288 * 120.00368 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00197 * 180.02562 * 4 3 2 7 7 C 1.47056 * 122.49345 * 355.84661 * 6 4 3 8 8 S 1.83563 * 104.97914 * 184.04275 * 7 6 4 9 9 C 1.84246 * 94.86113 * 18.51201 * 8 7 6 10 10 C 1.46127 * 122.50182 * 175.55995 * 6 4 3 11 11 H 1.09003 * 109.47173 * 269.28654 * 10 6 4 12 12 C 1.50700 * 109.47298 * 29.22325 * 10 6 4 13 13 O 1.21282 * 119.99644 * 41.69696 * 12 10 6 14 14 N 1.34774 * 120.00557 * 221.69979 * 12 10 6 15 15 C 1.46493 * 120.00121 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.46943 * 299.99722 * 16 15 14 18 18 C 1.53000 * 109.47277 * 59.99657 * 16 15 14 19 19 C 1.50704 * 109.47342 * 179.97438 * 16 15 14 20 20 H 1.07995 * 119.99779 * 0.02562 * 19 16 15 21 21 C 1.37874 * 120.00069 * 179.97438 * 19 16 15 22 22 N 1.31519 * 120.00041 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 119.99890 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47109 * 90.00602 * 23 21 19 25 25 H 1.48504 * 109.47330 * 210.00333 * 23 21 19 26 26 H 1.48498 * 109.47423 * 330.00665 * 23 21 19 27 27 H 1.08997 * 109.46956 * 299.99096 * 1 2 3 28 28 H 1.09005 * 109.46978 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47482 * 59.99232 * 1 2 3 30 30 H 1.08998 * 109.47482 * 120.00768 * 2 1 3 31 31 H 1.09009 * 109.46682 * 240.00628 * 2 1 3 32 32 H 1.08999 * 109.47110 * 300.00831 * 3 2 1 33 33 H 1.09006 * 109.46434 * 60.00483 * 3 2 1 34 34 H 1.09007 * 110.33979 * 302.91166 * 7 6 4 35 35 H 1.08993 * 110.34246 * 65.16744 * 7 6 4 36 36 H 1.08997 * 111.35226 * 84.48941 * 9 8 7 37 37 H 1.09003 * 111.34816 * 209.17437 * 9 8 7 38 38 H 0.97005 * 119.99720 * 359.97438 * 14 12 10 39 39 H 1.09007 * 109.47093 * 299.99652 * 15 14 12 40 40 H 1.08998 * 109.47565 * 59.99315 * 15 14 12 41 41 H 1.08998 * 109.47042 * 59.99741 * 17 16 15 42 42 H 1.09002 * 109.46995 * 180.02562 * 17 16 15 43 43 H 1.09006 * 109.46650 * 299.99614 * 17 16 15 44 44 H 1.08997 * 109.47066 * 60.00243 * 18 16 15 45 45 H 1.09000 * 109.47482 * 180.02562 * 18 16 15 46 46 H 1.09001 * 109.46751 * 299.99911 * 18 16 15 47 47 H 0.97005 * 119.99773 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2208 2.6098 -0.0002 7 6 3.5445 3.9125 -0.0890 8 16 4.9008 5.1465 -0.1737 9 6 6.1890 3.9284 -0.6751 10 6 5.6776 2.6753 0.0946 11 1 5.9708 2.7435 1.1422 12 6 6.2770 1.4336 -0.5136 13 8 5.8254 0.9854 -1.5461 14 7 7.3147 0.8210 0.0899 15 6 7.8977 -0.3857 -0.5017 16 6 9.0522 -0.8765 0.3741 17 6 10.1215 0.2139 0.4664 18 6 8.5287 -1.1973 1.7755 19 6 9.6516 -2.1183 -0.2341 20 1 9.2495 -2.5173 -1.1536 21 6 10.7139 -2.7444 0.3828 22 7 11.2038 -2.2582 1.5023 23 14 11.4572 -4.2831 -0.3715 24 1 12.5465 -3.9001 -1.3052 25 1 12.0081 -5.1455 0.7046 26 1 10.4079 -5.0272 -1.1137 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 2.9318 3.9608 -0.9893 35 1 2.9323 4.0827 0.7965 36 1 6.1835 3.7660 -1.7529 37 1 7.1771 4.2301 -0.3276 38 1 7.6761 1.1796 0.9156 39 1 7.1358 -1.1625 -0.5679 40 1 8.2710 -0.1572 -1.4999 41 1 9.6878 1.1118 0.9065 42 1 10.9443 -0.1359 1.0900 43 1 10.4946 0.4423 -0.5321 44 1 7.7669 -1.9741 1.7098 45 1 9.3513 -1.5465 2.3996 46 1 8.0950 -0.2993 2.2156 47 1 11.9510 -2.6989 1.9365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:04 Heat of formation + Delta-G solvation = -90.887991 kcal Electronic energy + Delta-G solvation = -27132.602034 eV Core-core repulsion = 23440.844493 eV Total energy + Delta-G solvation = -3691.757541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83958 -40.05203 -38.19251 -37.26086 -35.36018 -35.00915 -33.05702 -32.19934 -28.90557 -28.41614 -27.59447 -27.52312 -26.93227 -24.81902 -23.01729 -21.70508 -20.69294 -20.30541 -18.98248 -18.34009 -17.91207 -17.76189 -16.95222 -16.79126 -16.33154 -16.23589 -16.00130 -15.67315 -15.24769 -14.83524 -14.75951 -14.57266 -14.44350 -14.10695 -14.01780 -13.92052 -13.51610 -13.24764 -13.20388 -13.11306 -12.86937 -12.72320 -12.64652 -12.62323 -12.27440 -12.16272 -12.04997 -11.83558 -11.66660 -11.51252 -11.29116 -10.92412 -10.78441 -10.69505 -10.41840 -10.06799 -9.89615 -8.91087 -8.04617 -6.20431 0.49581 0.82294 1.33138 1.40308 1.42698 1.51676 1.57521 1.88948 2.29381 2.47367 3.13002 3.18552 3.54151 3.65755 3.82567 3.93833 4.02553 4.16110 4.21797 4.28409 4.39993 4.47818 4.48793 4.51945 4.67886 4.68621 4.68787 4.83186 4.95062 4.99408 5.02523 5.09517 5.16775 5.21785 5.24534 5.34717 5.44178 5.57857 5.63926 5.65036 6.03414 6.11903 6.19289 6.41354 6.63533 6.82814 7.03859 7.35175 7.47014 8.94434 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.003320 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.777026 B = 8431.166812 C = 9876.807891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.509 3.491 5 O -0.553 6.553 6 N -0.613 5.613 7 C 0.152 3.848 8 S -0.249 6.249 9 C -0.061 4.061 10 C 0.116 3.884 11 H 0.119 0.881 12 C 0.520 3.480 13 O -0.573 6.573 14 N -0.706 5.706 15 C 0.159 3.841 16 C 0.053 3.947 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.532 4.532 20 H 0.040 0.960 21 C 0.030 3.970 22 N -0.898 5.898 23 Si 0.945 3.055 24 H -0.276 1.276 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.406 0.594 39 H 0.022 0.978 40 H 0.037 0.963 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.020 0.980 44 H 0.009 0.991 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.634 17.226 1.264 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.161 4.161 4 C 0.298 3.702 5 O -0.429 6.429 6 N -0.351 5.351 7 C -0.080 4.080 8 S -0.022 6.022 9 C -0.211 4.211 10 C 0.007 3.993 11 H 0.137 0.863 12 C 0.305 3.695 13 O -0.452 6.452 14 N -0.358 5.358 15 C 0.035 3.965 16 C 0.052 3.948 17 C -0.177 4.177 18 C -0.174 4.174 19 C -0.570 4.570 20 H 0.058 0.942 21 C -0.170 4.170 22 N -0.536 5.536 23 Si 0.772 3.228 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.204 1.204 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.115 0.885 37 H 0.169 0.831 38 H 0.243 0.757 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.039 0.961 44 H 0.028 0.972 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.489 17.499 0.874 25.471 hybrid contribution 0.996 -2.395 -0.459 2.634 sum -17.493 15.104 0.414 23.115 Atomic orbital electron populations 1.21727 0.92825 1.02373 1.03116 1.21272 0.97345 0.95022 1.01430 1.21772 0.87220 1.00153 1.06946 1.21625 0.92270 0.81784 0.74501 1.90832 1.70745 1.32316 1.49011 1.48347 1.04236 1.06978 1.75556 1.24263 0.95435 0.79975 1.08316 1.88224 1.07381 1.16073 1.90501 1.24699 1.01793 0.91066 1.03516 1.21907 0.82409 0.93216 1.01749 0.86326 1.20491 0.79452 0.85012 0.84560 1.90639 1.61461 1.66631 1.26423 1.45946 1.33607 1.28283 1.27950 1.21126 0.94574 0.84675 0.96123 1.18344 0.90401 0.93904 0.92108 1.21653 1.00543 0.96044 0.99412 1.21637 0.99214 0.97670 0.98922 1.21257 1.16003 1.11038 1.08710 0.94191 1.25442 0.96769 0.99540 0.95286 1.69901 1.25385 1.40589 1.17772 0.85755 0.78514 0.80267 0.78259 1.20154 1.20555 1.20432 0.90873 0.92738 0.91422 0.93221 0.94208 0.86417 0.85236 0.86458 0.84319 0.88506 0.83150 0.75713 0.95963 0.94477 0.94155 0.91754 0.96066 0.97188 0.91612 0.94731 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.11 -2.28 5.22 30.60 0.16 -2.12 16 3 C -0.12 -1.93 4.68 29.85 0.14 -1.79 16 4 C 0.51 13.62 7.23 87.65 0.63 14.25 16 5 O -0.55 -21.75 12.74 19.56 0.25 -21.50 16 6 N -0.61 -13.35 3.13 -806.07 -2.52 -15.87 16 7 C 0.15 1.88 6.83 127.66 0.87 2.76 16 8 S -0.25 -3.83 23.32 -56.49 -1.32 -5.15 16 9 C -0.06 -1.16 7.05 72.91 0.51 -0.65 16 10 C 0.12 2.82 3.30 45.25 0.15 2.97 16 11 H 0.12 2.45 8.03 -2.39 -0.02 2.43 16 12 C 0.52 18.66 4.91 87.66 0.43 19.09 16 13 O -0.57 -25.74 14.87 19.58 0.29 -25.45 16 14 N -0.71 -26.26 4.96 -463.07 -2.30 -28.55 16 15 C 0.16 7.36 4.50 86.38 0.39 7.75 16 16 C 0.05 2.57 0.50 -52.93 -0.03 2.55 16 17 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 18 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 19 C -0.53 -29.41 8.01 25.60 0.21 -29.20 16 20 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 21 C 0.03 1.60 5.15 84.65 0.44 2.03 16 22 N -0.90 -48.78 9.35 21.45 0.20 -48.58 16 23 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.04 1.04 8.10 -2.38 -0.02 1.02 16 32 H 0.12 1.31 8.01 -2.39 -0.02 1.29 16 33 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.12 1.07 8.03 -2.38 -0.02 1.05 16 35 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 2.11 8.11 -2.39 -0.02 2.09 16 37 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.41 12.99 6.08 -92.70 -0.56 12.43 16 39 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.49 6.86 -2.39 -0.02 1.47 16 42 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 43 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.07 3.38 6.07 -2.39 -0.01 3.37 16 46 H 0.03 1.38 6.86 -2.39 -0.02 1.37 16 47 H 0.26 13.60 8.31 -92.70 -0.77 12.83 16 Total: -1.00 -74.86 380.48 2.80 -72.06 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.39 Total: 20.42 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.78 Total: 6.80 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -4.62 Total: -93.01 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: 0.54 Total: -46.95 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -1.32 Total: -5.15 kcal Total: -74.86 2.80 -72.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.826 kcal (2) G-P(sol) polarization free energy of solvation -74.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds