Wall clock time and date at job start Tue Mar 31 2020 15:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47362 * 2 1 4 4 C 1.50693 * 109.47176 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00346 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99987 * 180.02562 * 4 3 2 7 7 C 1.47599 * 122.42905 * 0.02562 * 6 4 3 8 8 S 1.84068 * 102.63782 * 204.81387 * 7 6 4 9 9 C 1.84206 * 93.91105 * 326.56430 * 8 7 6 10 10 C 1.45505 * 122.42967 * 179.74088 * 6 4 3 11 11 H 1.08996 * 108.75361 * 57.94969 * 10 6 4 12 12 C 1.50695 * 108.74953 * 299.88686 * 10 6 4 13 13 O 1.21283 * 120.00452 * 0.02562 * 12 10 6 14 14 N 1.34778 * 119.99958 * 180.02562 * 12 10 6 15 15 C 1.46506 * 120.00342 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.46801 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47474 * 299.99217 * 16 15 14 18 18 C 1.52995 * 109.47712 * 59.99971 * 16 15 14 19 19 C 1.50701 * 109.46691 * 179.97438 * 16 15 14 20 20 H 1.08003 * 119.99958 * 359.97438 * 19 16 15 21 21 C 1.37878 * 120.00113 * 179.97438 * 19 16 15 22 22 N 1.31514 * 119.99812 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00013 * 179.97438 * 21 19 16 24 24 H 1.48493 * 109.47225 * 90.00153 * 23 21 19 25 25 H 1.48505 * 109.46781 * 210.00087 * 23 21 19 26 26 H 1.48500 * 109.47178 * 329.99605 * 23 21 19 27 27 H 1.08996 * 109.47024 * 300.00117 * 1 2 3 28 28 H 1.08997 * 109.46885 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46877 * 240.00162 * 2 1 3 31 31 H 1.09003 * 109.47274 * 120.00438 * 2 1 3 32 32 H 1.09002 * 109.46490 * 60.00149 * 3 2 1 33 33 H 1.09003 * 109.47284 * 300.00432 * 3 2 1 34 34 H 1.09006 * 110.77811 * 323.10362 * 7 6 4 35 35 H 1.09005 * 110.77478 * 86.33456 * 7 6 4 36 36 H 1.09003 * 111.05499 * 150.26886 * 9 8 7 37 37 H 1.09007 * 111.05694 * 274.20543 * 9 8 7 38 38 H 0.96998 * 119.99749 * 359.97438 * 14 12 10 39 39 H 1.08994 * 109.46538 * 299.99687 * 15 14 12 40 40 H 1.09002 * 109.46696 * 59.99657 * 15 14 12 41 41 H 1.09008 * 109.46638 * 60.00590 * 17 16 15 42 42 H 1.08992 * 109.47426 * 180.02562 * 17 16 15 43 43 H 1.09002 * 109.47214 * 300.00886 * 17 16 15 44 44 H 1.09002 * 109.47050 * 59.99448 * 18 16 15 45 45 H 1.09000 * 109.47422 * 179.97438 * 18 16 15 46 46 H 1.09000 * 109.47086 * 300.00015 * 18 16 15 47 47 H 0.97006 * 119.99753 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6097 0.0013 7 6 3.5378 3.9181 0.0019 8 16 4.7966 5.0300 -0.7512 9 6 6.2218 4.1166 -0.0248 10 6 5.6747 2.6713 0.0075 11 1 6.0518 2.1373 -0.8647 12 6 6.1834 1.9839 1.2482 13 8 5.4003 1.4972 2.0362 14 7 7.5086 1.9099 1.4824 15 6 8.0033 1.2410 2.6883 16 6 9.5320 1.2965 2.7115 17 6 10.0869 0.5902 1.4728 18 6 9.9896 2.7564 2.7140 19 6 10.0408 0.6091 3.9523 20 1 9.3434 0.1763 4.6544 21 6 11.3966 0.5326 4.1913 22 7 12.2457 1.0591 3.3362 23 14 12.0272 -0.3189 5.7298 24 1 12.2482 -1.7591 5.4432 25 1 13.3077 0.3042 6.1507 26 1 11.0270 -0.1786 6.8185 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.6364 3.8840 -0.6100 35 1 3.3011 4.2301 1.0192 36 1 7.1014 4.1907 -0.6643 37 1 6.4417 4.4708 0.9824 38 1 8.1349 2.2988 0.8520 39 1 7.6077 1.7439 3.5707 40 1 7.6777 0.2008 2.6863 41 1 9.7188 1.0878 0.5755 42 1 11.1760 0.6293 1.4895 43 1 9.7609 -0.4499 1.4711 44 1 9.5943 3.2596 3.5964 45 1 11.0787 2.7959 2.7309 46 1 9.6215 3.2541 1.8167 47 1 13.1996 1.0055 3.5045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:10 Heat of formation + Delta-G solvation = -92.561696 kcal Electronic energy + Delta-G solvation = -26917.575607 eV Core-core repulsion = 23225.745489 eV Total energy + Delta-G solvation = -3691.830118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78814 -40.19555 -38.22144 -37.20286 -35.35740 -35.12358 -33.23880 -32.08841 -28.88045 -28.39977 -27.58361 -27.51794 -26.90303 -24.90568 -23.00381 -21.61514 -20.71974 -20.33053 -18.96080 -18.48246 -17.90012 -17.80429 -16.97573 -16.66873 -16.55590 -16.36649 -16.03715 -15.57517 -15.08121 -14.91757 -14.84387 -14.58173 -14.41684 -14.17044 -14.03191 -13.96611 -13.35213 -13.18774 -13.12679 -13.06932 -12.84461 -12.70212 -12.66906 -12.62368 -12.27137 -12.17259 -12.04440 -12.01192 -11.65258 -11.51031 -11.29191 -11.08218 -10.79475 -10.70354 -10.42017 -10.02606 -9.91878 -8.94403 -8.04810 -6.20440 0.52713 0.84328 1.39010 1.40261 1.43448 1.51401 1.55034 1.72830 2.29318 2.47162 3.06725 3.18771 3.52146 3.58023 3.90507 3.93822 3.98590 4.13254 4.25295 4.35785 4.37262 4.42507 4.46756 4.53765 4.68327 4.68777 4.69852 4.85131 4.94569 5.00979 5.03527 5.09822 5.17190 5.21915 5.26041 5.32387 5.45138 5.54047 5.64823 5.65886 6.07404 6.13538 6.19633 6.41475 6.56657 6.83119 7.05916 7.24140 7.47248 8.94048 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.003067 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.488174 B = 9128.577675 C =10409.429050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.126 4.126 4 C 0.522 3.478 5 O -0.568 6.568 6 N -0.606 5.606 7 C 0.151 3.849 8 S -0.253 6.253 9 C -0.062 4.062 10 C 0.120 3.880 11 H 0.115 0.885 12 C 0.497 3.503 13 O -0.570 6.570 14 N -0.705 5.705 15 C 0.153 3.847 16 C 0.054 3.946 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.532 4.532 20 H 0.041 0.959 21 C 0.030 3.970 22 N -0.897 5.897 23 Si 0.943 3.057 24 H -0.281 1.281 25 H -0.280 1.280 26 H -0.276 1.276 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.157 0.843 37 H 0.106 0.894 38 H 0.410 0.590 39 H 0.039 0.961 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.012 0.988 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.488 9.713 -11.960 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.165 4.165 4 C 0.312 3.688 5 O -0.445 6.445 6 N -0.342 5.342 7 C -0.081 4.081 8 S -0.027 6.027 9 C -0.211 4.211 10 C 0.010 3.990 11 H 0.132 0.868 12 C 0.281 3.719 13 O -0.449 6.449 14 N -0.358 5.358 15 C 0.029 3.971 16 C 0.053 3.947 17 C -0.180 4.180 18 C -0.178 4.178 19 C -0.570 4.570 20 H 0.059 0.941 21 C -0.170 4.170 22 N -0.536 5.536 23 Si 0.770 3.230 24 H -0.207 1.207 25 H -0.205 1.205 26 H -0.202 1.202 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.124 0.876 36 H 0.175 0.825 37 H 0.125 0.875 38 H 0.247 0.753 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.031 0.969 44 H 0.039 0.961 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.629 9.824 -12.159 25.093 hybrid contribution 1.272 -1.714 1.732 2.749 sum -18.357 8.110 -10.427 22.615 Atomic orbital electron populations 1.21733 0.92929 1.02453 1.03018 1.21268 0.97264 0.94796 1.01609 1.21799 0.87528 1.00472 1.06701 1.21437 0.91987 0.81531 0.73810 1.90723 1.71552 1.32387 1.49832 1.48351 1.03937 1.06992 1.74903 1.24563 0.97726 0.80772 1.05070 1.88358 1.03296 1.42854 1.68160 1.24577 1.00129 0.89785 1.06609 1.21188 0.83172 0.97888 0.96714 0.86774 1.21296 0.82650 0.79978 0.87958 1.90657 1.56634 1.48398 1.49206 1.46028 1.06409 1.57886 1.25449 1.21218 0.96133 0.94312 0.85425 1.18333 0.87806 0.94210 0.94341 1.21692 1.03015 0.97247 0.96015 1.21660 1.02877 0.95565 0.97659 1.21270 0.92049 1.36854 1.06859 0.94108 1.25420 0.96956 0.95814 0.98775 1.69894 1.02240 1.45209 1.36239 0.85786 0.77751 0.78739 0.80698 1.20672 1.20510 1.20154 0.91794 0.90788 0.92500 0.92606 0.94251 0.86939 0.85163 0.82959 0.87592 0.82481 0.87536 0.75303 0.94247 0.95519 0.94299 0.91616 0.96919 0.96121 0.91832 0.93902 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.91 71.98 0.71 -1.06 16 2 C -0.11 -2.15 5.22 30.59 0.16 -1.99 16 3 C -0.13 -2.04 4.49 29.85 0.13 -1.90 16 4 C 0.52 14.00 6.74 87.65 0.59 14.59 16 5 O -0.57 -21.56 14.67 15.42 0.23 -21.33 16 6 N -0.61 -13.65 2.76 -807.47 -2.23 -15.88 16 7 C 0.15 2.09 7.21 127.56 0.92 3.01 16 8 S -0.25 -3.97 23.44 -56.49 -1.32 -5.29 16 9 C -0.06 -1.07 6.69 72.52 0.49 -0.58 16 10 C 0.12 2.92 2.86 44.96 0.13 3.05 16 11 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 12 C 0.50 17.16 6.47 87.66 0.57 17.72 16 13 O -0.57 -24.85 14.60 15.42 0.23 -24.63 16 14 N -0.71 -24.32 4.83 -463.06 -2.23 -26.56 16 15 C 0.15 6.68 4.50 86.38 0.39 7.07 16 16 C 0.05 2.49 0.50 -52.93 -0.03 2.47 16 17 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 18 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 19 C -0.53 -28.56 8.01 25.60 0.21 -28.35 16 20 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 21 C 0.03 1.61 5.15 84.65 0.44 2.05 16 22 N -0.90 -47.77 9.35 21.45 0.20 -47.57 16 23 Si 0.94 43.02 29.54 68.60 2.03 45.05 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 31 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.13 1.11 7.63 -2.39 -0.02 1.09 16 34 H 0.15 1.03 7.13 -2.38 -0.02 1.01 16 35 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.11 1.95 7.84 -2.38 -0.02 1.93 16 38 H 0.41 11.79 5.92 -92.71 -0.55 11.24 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.04 1.45 6.86 -2.38 -0.02 1.43 16 42 H 0.07 3.26 6.07 -2.39 -0.01 3.25 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 46 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 47 H 0.26 13.37 8.31 -92.70 -0.77 12.60 16 Total: -1.00 -73.16 380.63 3.16 -70.00 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.41 Total: 19.64 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 5.86 Total: 6.57 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -4.26 Total: -90.01 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: 0.45 Total: -45.96 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -1.32 Total: -5.29 kcal Total: -73.16 3.16 -70.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.562 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds