Wall clock time and date at job start Tue Mar 31 2020 16:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99803 * 2 1 4 4 N 1.46505 * 109.46904 * 124.99793 * 3 2 1 5 5 C 1.46498 * 120.00129 * 278.10109 * 4 3 2 6 6 C 1.50695 * 109.47153 * 269.99917 * 5 4 3 7 7 H 1.08004 * 120.00473 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99952 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99867 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00063 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47119 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46915 * 120.00130 * 10 8 6 13 13 H 1.48495 * 109.47550 * 240.00112 * 10 8 6 14 14 C 1.34784 * 119.99741 * 98.10220 * 4 3 2 15 15 O 1.21547 * 119.99618 * 186.11962 * 14 4 3 16 16 C 1.47847 * 120.00056 * 6.12925 * 14 4 3 17 17 C 1.39566 * 120.14483 * 150.43731 * 16 14 4 18 18 C 1.37957 * 119.85444 * 180.02562 * 17 16 14 19 19 C 1.38354 * 120.14288 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.85672 * 180.02562 * 19 18 17 21 21 N 1.46504 * 109.47119 * 90.00025 * 20 19 18 22 22 C 1.34770 * 119.99960 * 180.02562 * 21 20 19 23 23 O 1.21616 * 120.00374 * 359.97438 * 22 21 20 24 24 C 1.47100 * 119.99961 * 180.02562 * 22 21 20 25 25 C 1.32994 * 119.99874 * 179.97438 * 24 22 21 26 26 C 1.38369 * 120.29511 * 0.27687 * 19 18 17 27 27 C 1.37959 * 120.13845 * 359.44875 * 26 19 18 28 28 H 1.08000 * 120.00025 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99987 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.99898 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47325 * 5.00084 * 3 2 1 32 32 H 1.08998 * 109.47594 * 244.99600 * 3 2 1 33 33 H 1.08997 * 109.47250 * 30.00367 * 5 4 3 34 34 H 1.09004 * 109.46896 * 150.00028 * 5 4 3 35 35 H 0.96998 * 119.99901 * 180.02562 * 9 8 6 36 36 H 1.08005 * 120.07518 * 359.97438 * 17 16 14 37 37 H 1.08003 * 119.92911 * 179.97438 * 18 17 16 38 38 H 1.08999 * 109.47528 * 210.00185 * 20 19 18 39 39 H 1.09002 * 109.46502 * 330.00187 * 20 19 18 40 40 H 0.97006 * 119.99855 * 359.97438 * 21 20 19 41 41 H 1.08000 * 120.00175 * 359.97438 * 24 22 21 42 42 H 1.08005 * 119.99855 * 180.02562 * 25 24 22 43 43 H 1.07999 * 120.00653 * 359.97438 * 25 24 22 44 44 H 1.08000 * 119.92617 * 179.70118 * 26 19 18 45 45 H 1.08000 * 120.06801 * 180.25268 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5131 1.6967 2.4665 6 6 2.6364 3.1867 2.6550 7 1 3.0328 3.8007 1.8598 8 6 2.2422 3.7663 3.8424 9 7 1.7591 3.0187 4.8105 10 14 2.3945 5.6134 4.0759 11 1 2.9622 6.2226 2.8463 12 1 1.0521 6.1912 4.3396 13 1 3.2894 5.8948 5.2270 14 6 4.2917 1.0210 0.9442 15 8 5.0397 0.9345 1.8984 16 6 4.8058 0.7854 -0.4218 17 6 6.1375 1.0692 -0.7282 18 6 6.6107 0.8476 -2.0050 19 6 5.7685 0.3445 -2.9805 20 6 6.2924 0.1043 -4.3730 21 7 6.8182 -1.2598 -4.4684 22 6 7.3428 -1.7001 -5.6291 23 8 7.3793 -0.9653 -6.5975 24 6 7.8702 -3.0699 -5.7250 25 6 8.3874 -3.5046 -6.8706 26 6 4.4458 0.0659 -2.6848 27 6 3.9615 0.2776 -1.4105 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4027 -0.9313 33 1 1.4686 1.4026 2.5695 34 1 3.1108 1.1843 3.2204 35 1 1.4815 3.4265 5.6456 36 1 6.7959 1.4623 0.0323 37 1 7.6410 1.0672 -2.2435 38 1 5.4840 0.2333 -5.0927 39 1 7.0886 0.8166 -4.5894 40 1 6.7894 -1.8458 -3.6959 41 1 7.8375 -3.7227 -4.8652 42 1 8.7743 -4.5105 -6.9411 43 1 8.4198 -2.8521 -7.7306 44 1 3.7923 -0.3221 -3.4521 45 1 2.9299 0.0559 -1.1799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490705130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:09 Heat of formation + Delta-G solvation = 2.619991 kcal Electronic energy + Delta-G solvation = -26674.139435 eV Core-core repulsion = 22850.992753 eV Total energy + Delta-G solvation = -3823.146682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63436 -40.71333 -39.43927 -37.55759 -36.05496 -35.17645 -33.86340 -33.76104 -32.60719 -32.07256 -29.70655 -27.91087 -27.13590 -25.26482 -23.92374 -23.65352 -22.53554 -21.43847 -20.81228 -20.32269 -18.67240 -18.49201 -18.30054 -17.72421 -17.19340 -16.65590 -16.59702 -16.19263 -16.09492 -15.86437 -15.51066 -15.13978 -15.02287 -14.59167 -14.44377 -14.34287 -14.25817 -13.93909 -13.63472 -13.52414 -13.32785 -12.96907 -12.84277 -12.75597 -12.62059 -12.46994 -12.31308 -12.24995 -11.81112 -11.66079 -11.12575 -10.75993 -10.74240 -10.68054 -10.45740 -10.09414 -9.96678 -9.80247 -9.51974 -8.25915 -6.40963 -0.22199 0.34375 0.50846 1.25454 1.34466 1.36644 1.48636 1.76207 2.21991 2.36676 2.37497 2.44233 2.87010 3.03730 3.46195 3.68024 3.79713 3.94213 3.96732 4.02039 4.17437 4.26854 4.31413 4.32031 4.39570 4.62804 4.64409 4.77606 4.82263 4.84156 4.95587 5.01807 5.03936 5.16305 5.24971 5.34507 5.38016 5.39556 5.46597 5.46706 5.52588 5.66336 5.71407 5.85326 5.90222 6.01692 6.56290 6.62175 6.69362 7.20547 7.22921 7.35766 8.81638 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.002378 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.782268 B =11773.495151 C =12412.018294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.197 4.197 3 C 0.103 3.897 4 N -0.588 5.588 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.052 0.948 8 C 0.009 3.991 9 N -0.926 5.926 10 Si 0.968 3.032 11 H -0.268 1.268 12 H -0.267 1.267 13 H -0.281 1.281 14 C 0.535 3.465 15 O -0.595 6.595 16 C -0.131 4.131 17 C -0.082 4.082 18 C -0.098 4.098 19 C -0.082 4.082 20 C 0.165 3.835 21 N -0.711 5.711 22 C 0.536 3.464 23 O -0.593 6.593 24 C -0.227 4.227 25 C -0.085 4.085 26 C -0.095 4.095 27 C -0.117 4.117 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.128 0.872 33 H 0.026 0.974 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.116 0.884 37 H 0.150 0.850 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.415 0.585 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.096 0.904 44 H 0.161 0.839 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 -12.870 -23.074 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.216 4.216 3 C -0.019 4.019 4 N -0.316 5.316 5 C 0.142 3.858 6 C -0.584 4.584 7 H 0.071 0.929 8 C -0.191 4.191 9 N -0.565 5.565 10 Si 0.793 3.207 11 H -0.192 1.192 12 H -0.193 1.193 13 H -0.206 1.206 14 C 0.325 3.675 15 O -0.477 6.477 16 C -0.134 4.134 17 C -0.101 4.101 18 C -0.116 4.116 19 C -0.083 4.083 20 C 0.042 3.958 21 N -0.362 5.362 22 C 0.326 3.674 23 O -0.476 6.476 24 C -0.247 4.247 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.135 4.135 28 H 0.140 0.860 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.168 0.832 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.252 0.748 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.115 0.885 44 H 0.179 0.821 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.190 -12.349 -23.041 26.865 hybrid contribution -0.013 0.894 1.576 1.812 sum 6.177 -11.455 -21.465 25.103 Atomic orbital electron populations 1.24119 0.95299 1.03222 0.96368 1.23200 0.96906 0.97926 1.03535 1.21699 0.93043 0.96666 0.90449 1.48089 1.07869 1.64773 1.10874 1.18750 0.93652 0.94413 0.78972 1.21707 1.42708 0.93306 1.00664 0.92945 1.25863 0.94445 1.03599 0.95164 1.70055 1.43188 1.37479 1.05781 0.85355 0.78286 0.78936 0.78161 1.19191 1.19250 1.20642 1.19074 0.82090 0.76783 0.89526 1.90696 1.57773 1.54575 1.44678 1.20012 0.96153 1.04707 0.92560 1.21236 0.93540 0.97723 0.97638 1.21161 1.00874 0.98468 0.91082 1.20055 0.94198 0.99144 0.94875 1.20159 0.99290 0.84002 0.92369 1.45925 1.61337 1.15018 1.13922 1.19289 0.77072 0.88904 0.82100 1.90780 1.59172 1.59275 1.38382 1.22908 1.05444 0.94291 1.02095 1.24994 0.89719 1.01706 0.95902 1.21335 0.95223 0.98504 0.96210 1.22477 1.01159 0.97137 0.92718 0.85980 0.88146 0.86324 0.90756 0.85466 0.95607 0.98303 0.92307 0.86554 0.83232 0.89850 0.90542 0.74785 0.82671 0.83494 0.88537 0.82101 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 14.32 67.78 0.97 -2.50 16 2 C -0.20 -5.17 8.22 25.64 0.21 -4.96 16 3 C 0.10 3.30 5.33 85.63 0.46 3.75 16 4 N -0.59 -25.94 2.45 -833.92 -2.04 -27.98 16 5 C 0.26 14.51 5.21 85.63 0.45 14.96 16 6 C -0.55 -31.92 9.39 25.60 0.24 -31.67 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.50 5.46 84.66 0.46 0.96 16 9 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 10 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 C 0.54 23.87 7.46 86.79 0.65 24.52 16 15 O -0.59 -32.44 16.26 -3.86 -0.06 -32.50 16 16 C -0.13 -4.24 5.58 -20.09 -0.11 -4.35 16 17 C -0.08 -2.36 9.60 22.52 0.22 -2.14 16 18 C -0.10 -1.95 9.68 22.23 0.22 -1.73 16 19 C -0.08 -1.35 5.25 -19.80 -0.10 -1.46 16 20 C 0.16 2.43 5.79 85.63 0.50 2.93 16 21 N -0.71 -9.49 5.54 -470.44 -2.61 -12.10 16 22 C 0.54 9.30 7.76 86.57 0.67 9.97 16 23 O -0.59 -15.42 16.22 -4.08 -0.07 -15.48 16 24 C -0.23 -2.39 10.03 23.43 0.23 -2.15 16 25 C -0.08 -0.75 14.31 66.65 0.95 0.20 16 26 C -0.09 -1.58 9.68 22.23 0.22 -1.36 16 27 C -0.12 -2.74 7.49 22.53 0.17 -2.57 16 28 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 30 H 0.12 2.89 7.58 -2.91 -0.02 2.86 16 31 H 0.07 2.51 7.78 -2.39 -0.02 2.49 16 32 H 0.13 3.39 4.07 -2.42 -0.01 3.38 16 33 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 34 H 0.00 -0.07 7.35 -2.39 -0.02 -0.09 16 35 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.12 3.69 7.92 -2.91 -0.02 3.67 16 37 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.08 1.22 8.08 -2.39 -0.02 1.21 16 39 H 0.08 1.21 8.08 -2.39 -0.02 1.20 16 40 H 0.42 3.83 8.45 -92.70 -0.78 3.04 16 41 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.15 0.33 8.06 -2.91 -0.02 0.31 16 43 H 0.10 1.22 7.49 -2.91 -0.02 1.20 16 44 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.17 3.67 2.82 -2.91 -0.01 3.67 16 Total: -1.00 -82.43 387.12 4.15 -78.28 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.23 Total: 16.09 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 6.39 Total: 2.39 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -4.37 Total: -96.03 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.13 Total: -47.98 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -82.43 4.15 -78.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490705130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.903 kcal (2) G-P(sol) polarization free energy of solvation -82.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds