Wall clock time and date at job start Tue Mar 31 2020 15:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47015 * 2 1 4 4 C 1.35673 * 116.99644 * 179.97438 * 3 2 1 5 5 C 1.39117 * 119.86802 * 359.73293 * 4 3 2 6 6 C 1.36597 * 120.13950 * 179.71714 * 5 4 3 7 7 C 1.40244 * 119.86046 * 0.53051 * 6 5 4 8 8 C 1.46444 * 120.13688 * 179.76581 * 7 6 5 9 9 C 1.37781 * 120.00108 * 223.39332 * 8 7 6 10 10 C 1.43202 * 119.99672 * 189.98945 * 9 8 7 11 11 N 9.78005 * 157.91518 * 8.56066 * 2 1 3 12 12 C 1.47133 * 119.99871 * 9.98348 * 9 8 7 13 13 O 1.21643 * 120.00072 * 7.44866 * 12 9 8 14 14 N 1.34777 * 119.99545 * 187.44653 * 12 9 8 15 15 C 1.46501 * 119.99629 * 180.02562 * 14 12 9 16 16 H 1.09002 * 109.47151 * 324.99884 * 15 14 12 17 17 C 1.50695 * 109.47013 * 205.00125 * 15 14 12 18 18 H 1.08002 * 120.00193 * 359.97438 * 17 15 14 19 19 C 1.37882 * 120.00006 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99816 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00013 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47038 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47169 * 119.99886 * 21 19 17 24 24 H 1.48502 * 109.46945 * 239.99521 * 21 19 17 25 25 C 1.53004 * 109.47199 * 85.00100 * 15 14 12 26 26 C 1.52999 * 109.47088 * 295.00014 * 25 15 14 27 27 C 1.40245 * 119.73251 * 359.74315 * 7 6 5 28 28 C 1.36603 * 119.86319 * 0.02562 * 27 7 6 29 29 H 1.09004 * 109.46662 * 299.99561 * 1 2 3 30 30 H 1.08999 * 109.47263 * 59.99452 * 1 2 3 31 31 H 1.08999 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47263 * 120.00548 * 2 1 3 33 33 H 1.09004 * 109.46662 * 240.00439 * 2 1 3 34 34 H 1.07999 * 119.93112 * 359.97438 * 5 4 3 35 35 H 1.08003 * 120.07421 * 180.27301 * 6 5 4 36 36 H 1.08002 * 119.99820 * 43.39071 * 8 7 6 37 37 H 0.96996 * 120.00271 * 359.97438 * 14 12 9 38 38 H 0.96999 * 120.00150 * 180.02562 * 20 19 17 39 39 H 1.08997 * 109.46943 * 54.99875 * 25 15 14 40 40 H 1.08997 * 109.47274 * 174.99981 * 25 15 14 41 41 H 1.08994 * 109.47445 * 179.97438 * 26 25 15 42 42 H 1.09010 * 109.47268 * 300.00386 * 26 25 15 43 43 H 1.09007 * 109.47230 * 59.99759 * 26 25 15 44 44 H 1.08001 * 120.07264 * 180.02562 * 27 7 6 45 45 H 1.07996 * 119.93508 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5250 0.0005 5 6 4.1962 0.4198 0.0067 6 6 5.5513 0.5922 0.0014 7 6 6.0904 1.8869 0.0011 8 6 7.5422 2.0788 0.0006 9 6 8.1118 3.0288 0.8201 10 6 9.4950 3.3675 0.6697 11 7 10.5925 3.6361 0.5474 12 6 7.2988 3.6952 1.8495 13 8 6.1645 3.3149 2.0692 14 7 7.8110 4.7271 2.5489 15 6 7.0017 5.3904 3.5743 16 1 5.9584 5.4069 3.2593 17 6 7.4913 6.8028 3.7647 18 1 8.3224 7.1697 3.1807 19 6 6.8788 7.6266 4.6853 20 7 5.8671 7.1797 5.3969 21 14 7.4852 9.3777 4.9208 22 1 8.6267 9.6334 4.0062 23 1 6.3848 10.3276 4.6175 24 1 7.9263 9.5639 6.3265 25 6 7.1241 4.6260 4.8941 26 6 6.5129 3.2324 4.7348 27 6 5.2335 2.9971 0.0007 28 6 3.8801 2.8118 0.0011 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.7799 -0.5767 0.0114 35 1 6.2062 -0.2666 0.0018 36 1 8.1664 1.4756 -0.6420 37 1 8.7157 5.0302 2.3740 38 1 5.4359 7.7593 6.0442 39 1 8.1760 4.5327 5.1637 40 1 6.5947 5.1674 5.6780 41 1 6.6004 2.6876 5.6747 42 1 5.4608 3.3257 4.4650 43 1 7.0423 2.6909 3.9507 44 1 5.6428 3.9966 0.0000 45 1 3.2192 3.6659 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490879878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:00 Heat of formation + Delta-G solvation = -17.100036 kcal Electronic energy + Delta-G solvation = -27577.782128 eV Core-core repulsion = 23753.780322 eV Total energy + Delta-G solvation = -3824.001806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37974 -40.68036 -38.64419 -37.76708 -36.89558 -34.49390 -34.28378 -32.88753 -32.53993 -31.86165 -30.12500 -28.81441 -25.80467 -25.01633 -24.44040 -23.22009 -22.60368 -21.50625 -21.33192 -19.95056 -19.23043 -18.15880 -17.33627 -16.99843 -16.97770 -16.66181 -16.36327 -16.16694 -15.63928 -15.24900 -14.86368 -14.73330 -14.58844 -14.41189 -14.36787 -14.09707 -14.06363 -13.83869 -13.64434 -13.41287 -13.32098 -13.16182 -12.99750 -12.80444 -12.69872 -12.62598 -12.54439 -12.15308 -12.03869 -11.72134 -11.61730 -11.55023 -11.03359 -10.71994 -10.55940 -10.47399 -9.89473 -9.44878 -8.68309 -8.16981 -6.33129 -0.62495 0.63518 0.79567 1.40767 1.42842 1.53409 1.54734 1.78820 2.31342 2.35077 2.61982 2.67241 2.82754 2.99635 3.12486 3.87713 3.91996 3.98245 4.01797 4.10990 4.21730 4.38631 4.45241 4.53060 4.54123 4.62550 4.62971 4.74787 4.80974 4.90352 4.97647 4.98499 5.12321 5.19186 5.24253 5.31461 5.40222 5.46748 5.47369 5.57786 5.61158 5.66950 5.82008 5.88802 5.92143 6.18655 6.40436 6.53647 6.74168 6.95563 7.32679 7.53348 8.87883 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.003529 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.571821 B = 7932.519079 C = 9548.571282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.337 6.337 4 C 0.146 3.854 5 C -0.229 4.229 6 C -0.031 4.031 7 C -0.146 4.146 8 C 0.111 3.889 9 C -0.156 4.156 10 C 0.277 3.723 11 N -0.451 5.451 12 C 0.550 3.450 13 O -0.542 6.542 14 N -0.706 5.706 15 C 0.284 3.716 16 H 0.013 0.987 17 C -0.550 4.550 18 H 0.061 0.939 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.278 1.278 25 C -0.122 4.122 26 C -0.119 4.119 27 C 0.013 3.987 28 C -0.192 4.192 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.192 0.808 37 H 0.391 0.609 38 H 0.265 0.735 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.047 0.953 44 H 0.108 0.892 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -18.150 -13.430 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.251 6.251 4 C 0.100 3.900 5 C -0.247 4.247 6 C -0.049 4.049 7 C -0.147 4.147 8 C 0.087 3.913 9 C -0.163 4.163 10 C -0.037 4.037 11 N -0.128 5.128 12 C 0.337 3.663 13 O -0.422 6.422 14 N -0.353 5.353 15 C 0.181 3.819 16 H 0.031 0.969 17 C -0.589 4.589 18 H 0.079 0.921 19 C -0.179 4.179 20 N -0.547 5.547 21 Si 0.788 3.212 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.204 1.204 25 C -0.161 4.161 26 C -0.177 4.177 27 C -0.006 4.006 28 C -0.211 4.211 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.173 0.827 35 H 0.184 0.816 36 H 0.209 0.791 37 H 0.224 0.776 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.126 0.874 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.333 -17.756 -13.262 22.582 hybrid contribution 0.107 1.463 0.722 1.635 sum -4.226 -16.293 -12.541 20.990 Atomic orbital electron populations 1.21825 0.91850 1.04214 1.02935 1.23118 0.96712 0.80565 1.02652 1.86017 1.19339 1.31830 1.87888 1.19416 0.82636 0.94363 0.93580 1.21090 0.94371 0.98318 1.10953 1.21122 0.94853 0.95950 0.93001 1.18729 0.91937 0.94027 1.09986 1.23315 0.93413 0.87083 0.87467 1.18176 0.85797 1.07768 1.04555 1.25524 0.92214 0.93077 0.92850 1.81288 1.12454 1.09395 1.09669 1.18061 0.86598 0.80110 0.81551 1.90867 1.18524 1.64680 1.68131 1.46377 1.17884 1.32615 1.38471 1.18358 0.90248 0.89649 0.83690 0.96950 1.21577 1.17559 0.97368 1.22347 0.92110 1.25647 0.94833 1.02448 0.95011 1.70027 1.22716 1.37410 1.24541 0.85438 0.78278 0.79476 0.78008 1.19190 1.20612 1.20407 1.21787 0.98364 0.95127 1.00791 1.21644 0.99793 0.96851 0.99381 1.20717 0.92214 0.98159 0.89493 1.20072 0.95582 0.95323 1.10087 0.92560 0.91813 0.87844 0.91196 0.90078 0.82730 0.81646 0.79069 0.77599 0.92565 0.94984 0.91004 0.94065 0.94961 0.93370 0.87351 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.04 0.67 5.45 71.98 0.39 1.06 16 3 O -0.34 -8.34 10.12 -89.90 -0.91 -9.25 16 4 C 0.15 3.80 6.70 22.69 0.15 3.95 16 5 C -0.23 -4.51 8.97 22.10 0.20 -4.31 16 6 C -0.03 -0.57 9.75 22.37 0.22 -0.35 16 7 C -0.15 -3.35 4.63 -20.17 -0.09 -3.44 16 8 C 0.11 2.10 9.53 24.30 0.23 2.33 16 9 C -0.16 -4.17 5.75 -19.80 -0.11 -4.29 16 10 C 0.28 7.76 14.21 88.33 1.26 9.02 16 11 N -0.45 -14.18 18.54 19.01 0.35 -13.82 16 12 C 0.55 20.05 5.35 86.58 0.46 20.52 16 13 O -0.54 -21.86 9.31 -4.17 -0.04 -21.90 16 14 N -0.71 -29.42 4.97 -449.64 -2.24 -31.65 16 15 C 0.28 14.34 2.24 44.24 0.10 14.44 16 16 H 0.01 0.74 7.58 -2.39 -0.02 0.72 16 17 C -0.55 -29.61 8.73 25.60 0.22 -29.38 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 19 C 0.02 1.15 5.29 84.66 0.45 1.60 16 20 N -0.91 -51.66 11.29 21.45 0.24 -51.42 16 21 Si 0.96 42.97 29.54 68.60 2.03 44.99 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 C -0.12 -5.97 5.45 30.60 0.17 -5.80 16 26 C -0.12 -5.20 8.51 71.98 0.61 -4.59 16 27 C 0.01 0.37 6.54 22.38 0.15 0.52 16 28 C -0.19 -5.77 9.92 22.10 0.22 -5.55 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.96 7.63 -2.39 -0.02 0.94 16 33 H 0.08 0.91 7.66 -2.39 -0.02 0.89 16 34 H 0.16 2.05 6.27 -2.91 -0.02 2.03 16 35 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.39 15.44 7.45 -92.71 -0.69 14.75 16 38 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 3.95 5.95 -2.39 -0.01 3.93 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.03 1.50 7.84 -2.38 -0.02 1.48 16 43 H 0.05 1.99 5.65 -2.38 -0.01 1.98 16 44 H 0.11 3.48 6.95 -2.91 -0.02 3.46 16 45 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -68.51 376.31 5.13 -63.38 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.33 Total: 25.07 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 5.36 Total: -5.40 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -1.64 Total: -96.89 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.95 Total: -31.15 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -68.51 5.13 -63.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490879878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.281 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds