Wall clock time and date at job start Tue Mar 31 2020 16:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47236 * 133.68534 * 3 2 1 5 5 C 1.36907 * 120.00245 * 274.97461 * 4 3 2 6 6 H 1.07992 * 120.00607 * 189.77815 * 5 4 3 7 7 C 1.39015 * 119.99971 * 9.78038 * 5 4 3 8 8 N 1.31390 * 119.99822 * 10.61780 * 7 5 4 9 9 Si 1.86804 * 120.00414 * 190.62172 * 7 5 4 10 10 H 1.48496 * 109.46888 * 89.99594 * 9 7 5 11 11 H 1.48497 * 109.47109 * 209.99811 * 9 7 5 12 12 H 1.48500 * 109.46801 * 329.99682 * 9 7 5 13 13 C 1.34780 * 120.00018 * 95.24886 * 4 3 2 14 14 O 1.21631 * 119.99721 * 174.66972 * 13 4 3 15 15 C 1.47417 * 119.99587 * 354.66699 * 13 4 3 16 16 C 1.39851 * 120.07805 * 310.56675 * 15 13 4 17 17 C 1.37119 * 119.92477 * 179.71852 * 16 15 13 18 18 C 1.39233 * 120.07348 * 0.55954 * 17 16 15 19 19 N 1.39056 * 119.92703 * 179.69575 * 18 17 16 20 20 C 1.46844 * 110.99997 * 124.22949 * 19 18 17 21 21 C 1.53035 * 109.52308 * 174.16303 * 20 19 18 22 22 C 1.53120 * 109.28081 * 59.18070 * 21 20 19 23 23 O 1.42897 * 109.52615 * 182.44109 * 22 21 20 24 24 C 1.53121 * 109.15826 * 302.34938 * 22 21 20 25 25 C 1.46845 * 110.99720 * 0.02562 * 19 18 17 26 26 C 1.39230 * 120.14951 * 359.71862 * 18 17 16 27 27 C 1.37125 * 120.07601 * 359.97438 * 26 18 17 28 28 H 4.40646 * 5.51498 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46961 * 13.68672 * 3 2 1 30 30 H 1.09001 * 109.46942 * 253.68448 * 3 2 1 31 31 H 0.97006 * 119.99972 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.03449 * 359.97438 * 16 15 13 33 33 H 1.07998 * 119.96065 * 180.27824 * 17 16 15 34 34 H 1.09000 * 109.46657 * 294.17932 * 20 19 18 35 35 H 1.09004 * 109.46173 * 54.15011 * 20 19 18 36 36 H 1.09000 * 109.50520 * 299.23922 * 21 20 19 37 37 H 1.09002 * 109.53846 * 179.14008 * 21 20 19 38 38 H 1.09001 * 109.57400 * 62.28197 * 22 21 20 39 39 H 0.96694 * 114.00061 * 299.68820 * 23 22 21 40 40 H 1.09007 * 109.50162 * 297.70866 * 24 22 21 41 41 H 1.08998 * 109.53518 * 177.61525 * 24 22 21 42 42 H 1.09006 * 109.46164 * 305.85386 * 25 19 18 43 43 H 1.08999 * 109.46692 * 65.83315 * 25 19 18 44 44 H 1.08005 * 119.96250 * 180.02562 * 26 18 17 45 45 H 1.08004 * 120.03440 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9549 -0.9988 5 6 3.2654 0.5702 -2.3061 6 1 3.7698 1.2148 -3.0106 7 6 2.7495 -0.6502 -2.7269 8 7 1.9597 -1.3381 -1.9335 9 14 3.1791 -1.3122 -4.4200 10 1 4.4060 -2.1438 -4.3296 11 1 2.0559 -2.1405 -4.9273 12 1 3.4170 -0.1783 -5.3490 13 6 3.4587 2.2098 -0.6297 14 8 3.9546 2.9721 -1.4374 15 6 3.2128 2.6583 0.7529 16 6 1.9626 2.4520 1.3448 17 6 1.7392 2.8653 2.6330 18 6 2.7515 3.5001 3.3476 19 7 2.5196 3.9236 4.6517 20 6 3.5076 3.3507 5.5747 21 6 3.3122 3.9497 6.9693 22 6 1.8933 3.6439 7.4567 23 8 1.6863 4.2494 8.7344 24 6 0.8844 4.2091 6.4531 25 6 1.1502 3.6024 5.0735 26 6 3.9955 3.7123 2.7594 27 6 4.2277 3.2959 1.4737 28 1 -1.0502 0.0000 0.0003 29 1 3.0097 -0.9977 -0.2432 30 1 3.0092 0.2895 0.9863 31 1 1.5994 -2.1895 -2.2273 32 1 1.1754 1.9640 0.7893 33 1 0.7754 2.7022 3.0922 34 1 3.3762 2.2696 5.6221 35 1 4.5122 3.5790 5.2188 36 1 3.4571 5.0292 6.9252 37 1 4.0356 3.5133 7.6581 38 1 1.7600 2.5652 7.5390 39 1 2.2923 3.9374 9.4203 40 1 0.9911 5.2927 6.4009 41 1 -0.1271 3.9580 6.7724 42 1 0.4425 4.0137 4.3535 43 1 1.0298 2.5203 5.1235 44 1 4.7788 4.2047 3.3166 45 1 5.1928 3.4612 1.0179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490974762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:26 Heat of formation + Delta-G solvation = 31.215864 kcal Electronic energy + Delta-G solvation = -27817.036435 eV Core-core repulsion = 23995.129764 eV Total energy + Delta-G solvation = -3821.906672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.53515 -39.12175 -37.81295 -36.16750 -35.24623 -32.68189 -32.02596 -31.69135 -31.31903 -30.32984 -28.77456 -26.49002 -25.09877 -24.20867 -23.96581 -21.84084 -21.57474 -20.24781 -19.32225 -17.96089 -17.78146 -17.36133 -16.72582 -16.33670 -15.57845 -15.27502 -14.96534 -14.85299 -14.50920 -14.27570 -14.14140 -14.07230 -13.66692 -13.31413 -13.14176 -13.03427 -12.48563 -12.35344 -12.32371 -12.19048 -11.88453 -11.69779 -11.51928 -11.44068 -11.38147 -11.05116 -10.91322 -10.53035 -10.50540 -10.35731 -10.16336 -9.59441 -9.47532 -9.22473 -8.77034 -8.68445 -8.52046 -7.98775 -7.60714 -6.33248 -3.89940 1.43287 1.76011 3.11988 3.21744 3.26827 3.47971 3.69076 3.81466 3.84931 4.06880 4.16363 4.23807 4.42241 4.44706 4.74077 4.83392 4.91780 4.98629 5.04216 5.09383 5.16075 5.20233 5.29963 5.42892 5.44819 5.50245 5.56393 5.62067 5.72453 5.77314 5.79401 5.82690 5.93973 6.00492 6.30808 6.36652 6.40533 6.59428 6.89754 6.94038 6.95398 7.02026 7.08983 7.27997 7.42172 7.49363 7.96762 8.38377 8.83328 9.07149 9.29578 9.84751 10.60481 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.002821 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.766359 B = 9923.306274 C =10564.923655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.085 4.085 3 C 0.229 3.771 4 N -0.433 5.433 5 C -0.303 4.303 6 H 0.108 0.892 7 C 0.027 3.973 8 N -0.871 5.871 9 Si 0.932 3.068 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.482 3.518 14 O -0.583 6.583 15 C -0.117 4.117 16 C -0.072 4.072 17 C -0.174 4.174 18 C 0.108 3.892 19 N -0.488 5.488 20 C 0.059 3.941 21 C -0.150 4.150 22 C 0.102 3.898 23 O -0.567 6.567 24 C -0.111 4.111 25 C 0.052 3.948 26 C -0.147 4.147 27 C -0.058 4.058 28 H 0.197 0.803 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.269 0.731 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.377 0.623 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.123 0.877 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 3.969 19.204 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.088 4.088 3 C 0.107 3.893 4 N -0.149 5.149 5 C -0.431 4.431 6 H 0.126 0.874 7 C -0.176 4.176 8 N -0.511 5.511 9 Si 0.759 3.241 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.271 3.729 14 O -0.469 6.469 15 C -0.121 4.121 16 C -0.091 4.091 17 C -0.195 4.195 18 C 0.010 3.990 19 N -0.203 5.203 20 C -0.066 4.066 21 C -0.188 4.188 22 C 0.043 3.957 23 O -0.373 6.373 24 C -0.149 4.149 25 C -0.075 4.075 26 C -0.167 4.167 27 C -0.078 4.078 28 H 0.215 0.785 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.224 0.776 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.141 0.859 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.582 4.955 18.506 19.167 hybrid contribution 0.072 -1.565 -0.604 1.679 sum -0.510 3.390 17.902 18.228 Atomic orbital electron populations 1.24206 0.95318 1.04803 1.05754 1.22968 0.94142 0.96095 0.95545 1.18613 0.84464 0.96544 0.89728 1.43683 1.54638 1.08354 1.08259 1.19820 1.34868 1.03114 0.85263 0.87400 1.25337 0.95382 0.96830 1.00053 1.69964 1.29694 1.14991 1.36432 0.85816 0.77934 0.78910 0.81443 1.20272 1.20955 1.19383 1.17890 0.85473 0.82398 0.87111 1.90629 1.49000 1.53818 1.53423 1.20188 0.94717 1.01824 0.95413 1.21561 0.96970 0.96275 0.94311 1.21048 0.99658 1.02480 0.96296 1.18884 0.94703 0.95456 0.89917 1.58874 1.03942 1.56708 1.00781 1.22175 0.96142 0.96961 0.91345 1.22361 0.97268 1.03132 0.96069 1.21891 0.94454 0.95878 0.83463 1.86522 1.61521 1.69281 1.19941 1.21571 0.98735 1.02215 0.92350 1.22253 0.89647 0.99201 0.96367 1.20473 0.96166 1.04283 0.95821 1.20923 0.98751 0.95149 0.92948 0.78545 0.86174 0.92316 0.91941 0.84414 0.85723 0.93658 0.89477 0.90008 0.90968 0.92818 0.77613 0.90150 0.90456 0.89033 0.93286 0.85939 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.73 18.61 29.55 0.55 -5.18 16 2 C -0.09 -1.89 8.50 -37.12 -0.32 -2.20 16 3 C 0.23 5.15 4.76 -6.83 -0.03 5.11 16 4 N -0.43 -11.00 2.59 -119.16 -0.31 -11.31 16 5 C -0.30 -8.27 9.49 -15.00 -0.14 -8.42 16 6 H 0.11 3.10 7.21 -52.49 -0.38 2.72 16 7 C 0.03 0.68 5.24 -17.45 -0.09 0.59 16 8 N -0.87 -22.07 8.25 55.50 0.46 -21.62 16 9 Si 0.93 20.39 29.57 -169.99 -5.03 15.36 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 13 C 0.48 12.07 7.13 -12.52 -0.09 11.98 16 14 O -0.58 -16.56 16.63 5.25 0.09 -16.47 16 15 C -0.12 -2.39 4.65 -104.95 -0.49 -2.88 16 16 C -0.07 -1.32 7.73 -39.38 -0.30 -1.63 16 17 C -0.17 -2.63 8.77 -39.62 -0.35 -2.98 16 18 C 0.11 1.52 5.64 -83.85 -0.47 1.04 16 19 N -0.49 -5.62 4.68 -171.15 -0.80 -6.42 16 20 C 0.06 0.56 5.25 -3.84 -0.02 0.54 16 21 C -0.15 -1.15 5.72 -26.65 -0.15 -1.30 16 22 C 0.10 0.83 3.54 -26.61 -0.09 0.73 16 23 O -0.57 -4.69 13.32 -35.23 -0.47 -5.16 16 24 C -0.11 -1.00 5.75 -26.65 -0.15 -1.15 16 25 C 0.05 0.52 4.14 -3.84 -0.02 0.51 16 26 C -0.15 -2.15 9.11 -39.62 -0.36 -2.51 16 27 C -0.06 -1.02 9.69 -39.38 -0.38 -1.40 16 28 H 0.20 3.28 7.80 -54.08 -0.42 2.86 16 29 H 0.12 2.84 6.27 -51.93 -0.33 2.52 16 30 H 0.06 1.18 6.22 -51.93 -0.32 0.85 16 31 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 32 H 0.14 2.72 4.61 -52.48 -0.24 2.47 16 33 H 0.12 1.61 5.77 -52.49 -0.30 1.30 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.79 6.68 -51.93 -0.35 0.45 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.38 1.52 9.09 45.56 0.41 1.93 16 40 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.93 6.96 -51.93 -0.36 0.57 16 43 H 0.05 0.48 7.72 -51.93 -0.40 0.08 16 44 H 0.12 1.49 7.13 -52.48 -0.37 1.12 16 45 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -31.80 360.74 -8.69 -40.50 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.16 Total: 8.82 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.91 Total: -9.14 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: -0.65 Total: -39.35 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.38 Total: -21.63 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.80 -8.69 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490974762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.711 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds