Wall clock time and date at job start Tue Mar 31 2020 16:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47236 * 133.68534 * 3 2 1 5 5 C 1.36907 * 120.00245 * 274.97461 * 4 3 2 6 6 H 1.07992 * 120.00607 * 189.77815 * 5 4 3 7 7 C 1.39015 * 119.99971 * 9.78038 * 5 4 3 8 8 N 1.31390 * 119.99822 * 10.61780 * 7 5 4 9 9 Si 1.86804 * 120.00414 * 190.62172 * 7 5 4 10 10 H 1.48496 * 109.46888 * 89.99594 * 9 7 5 11 11 H 1.48497 * 109.47109 * 209.99811 * 9 7 5 12 12 H 1.48500 * 109.46801 * 329.99682 * 9 7 5 13 13 C 1.34780 * 120.00018 * 95.24886 * 4 3 2 14 14 O 1.21631 * 119.99721 * 174.66972 * 13 4 3 15 15 C 1.47417 * 119.99587 * 354.66699 * 13 4 3 16 16 C 1.39851 * 120.07805 * 310.56675 * 15 13 4 17 17 C 1.37119 * 119.92477 * 179.71852 * 16 15 13 18 18 C 1.39233 * 120.07348 * 0.55954 * 17 16 15 19 19 N 1.39056 * 119.92703 * 179.69575 * 18 17 16 20 20 C 1.46844 * 110.99997 * 124.22949 * 19 18 17 21 21 C 1.53035 * 109.52308 * 174.16303 * 20 19 18 22 22 C 1.53120 * 109.28081 * 59.18070 * 21 20 19 23 23 O 1.42897 * 109.52615 * 182.44109 * 22 21 20 24 24 C 1.53121 * 109.15826 * 302.34938 * 22 21 20 25 25 C 1.46845 * 110.99720 * 0.02562 * 19 18 17 26 26 C 1.39230 * 120.14951 * 359.71862 * 18 17 16 27 27 C 1.37125 * 120.07601 * 359.97438 * 26 18 17 28 28 H 4.40646 * 5.51498 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46961 * 13.68672 * 3 2 1 30 30 H 1.09001 * 109.46942 * 253.68448 * 3 2 1 31 31 H 0.97006 * 119.99972 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.03449 * 359.97438 * 16 15 13 33 33 H 1.07998 * 119.96065 * 180.27824 * 17 16 15 34 34 H 1.09000 * 109.46657 * 294.17932 * 20 19 18 35 35 H 1.09004 * 109.46173 * 54.15011 * 20 19 18 36 36 H 1.09000 * 109.50520 * 299.23922 * 21 20 19 37 37 H 1.09002 * 109.53846 * 179.14008 * 21 20 19 38 38 H 1.09001 * 109.57400 * 62.28197 * 22 21 20 39 39 H 0.96694 * 114.00061 * 299.68820 * 23 22 21 40 40 H 1.09007 * 109.50162 * 297.70866 * 24 22 21 41 41 H 1.08998 * 109.53518 * 177.61525 * 24 22 21 42 42 H 1.09006 * 109.46164 * 305.85386 * 25 19 18 43 43 H 1.08999 * 109.46692 * 65.83315 * 25 19 18 44 44 H 1.08005 * 119.96250 * 180.02562 * 26 18 17 45 45 H 1.08004 * 120.03440 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9549 -0.9988 5 6 3.2654 0.5702 -2.3061 6 1 3.7698 1.2148 -3.0106 7 6 2.7495 -0.6502 -2.7269 8 7 1.9597 -1.3381 -1.9335 9 14 3.1791 -1.3122 -4.4200 10 1 4.4060 -2.1438 -4.3296 11 1 2.0559 -2.1405 -4.9273 12 1 3.4170 -0.1783 -5.3490 13 6 3.4587 2.2098 -0.6297 14 8 3.9546 2.9721 -1.4374 15 6 3.2128 2.6583 0.7529 16 6 1.9626 2.4520 1.3448 17 6 1.7392 2.8653 2.6330 18 6 2.7515 3.5001 3.3476 19 7 2.5196 3.9236 4.6517 20 6 3.5076 3.3507 5.5747 21 6 3.3122 3.9497 6.9693 22 6 1.8933 3.6439 7.4567 23 8 1.6863 4.2494 8.7344 24 6 0.8844 4.2091 6.4531 25 6 1.1502 3.6024 5.0735 26 6 3.9955 3.7123 2.7594 27 6 4.2277 3.2959 1.4737 28 1 -1.0502 0.0000 0.0003 29 1 3.0097 -0.9977 -0.2432 30 1 3.0092 0.2895 0.9863 31 1 1.5994 -2.1895 -2.2273 32 1 1.1754 1.9640 0.7893 33 1 0.7754 2.7022 3.0922 34 1 3.3762 2.2696 5.6221 35 1 4.5122 3.5790 5.2188 36 1 3.4571 5.0292 6.9252 37 1 4.0356 3.5133 7.6581 38 1 1.7600 2.5652 7.5390 39 1 2.2923 3.9374 9.4203 40 1 0.9911 5.2927 6.4009 41 1 -0.1271 3.9580 6.7724 42 1 0.4425 4.0137 4.3535 43 1 1.0298 2.5203 5.1235 44 1 4.7788 4.2047 3.3166 45 1 5.1928 3.4612 1.0179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490974762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:25 Heat of formation + Delta-G solvation = 9.973890 kcal Electronic energy + Delta-G solvation = -27817.957556 eV Core-core repulsion = 23995.129764 eV Total energy + Delta-G solvation = -3822.827793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63921 -40.62188 -38.92014 -37.26009 -37.04543 -34.11864 -33.29501 -33.14426 -32.65995 -31.42258 -30.03145 -28.28052 -26.72592 -25.31452 -24.91190 -23.10154 -22.68030 -21.29574 -20.62837 -19.78458 -18.77154 -18.39747 -18.17986 -17.99877 -16.85947 -16.68166 -16.08698 -15.96179 -15.77924 -15.55065 -15.48177 -15.22345 -14.82420 -14.68811 -14.59124 -14.24843 -14.05421 -13.68272 -13.52289 -13.31202 -13.21730 -13.00024 -12.80159 -12.62531 -12.47947 -12.26101 -12.25276 -12.17814 -12.01122 -11.36122 -11.27535 -11.03760 -10.76889 -10.67415 -10.52534 -10.38312 -9.98457 -9.91883 -8.77336 -8.28665 -5.95230 0.09238 0.47423 1.36302 1.40432 1.51923 1.90541 2.09098 2.31892 2.44180 2.59090 2.85276 3.06708 3.22163 3.26696 3.75150 3.75592 3.87019 3.93246 3.99884 4.08884 4.13741 4.17711 4.29517 4.41742 4.44521 4.51651 4.59876 4.63347 4.68340 4.75132 4.82936 4.86197 5.02239 5.07293 5.11372 5.15535 5.23531 5.29472 5.33617 5.42420 5.46612 5.58865 5.70143 5.99406 6.01621 6.28078 6.41957 6.91154 7.08187 7.17350 7.35759 7.91704 8.61830 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.002821 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.766359 B = 9923.306274 C =10564.923655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.124 4.124 3 C 0.238 3.762 4 N -0.442 5.442 5 C -0.347 4.347 6 H 0.078 0.922 7 C 0.001 3.999 8 N -0.873 5.873 9 Si 0.993 3.007 10 H -0.266 1.266 11 H -0.272 1.272 12 H -0.279 1.279 13 C 0.472 3.528 14 O -0.635 6.635 15 C -0.151 4.151 16 C -0.075 4.075 17 C -0.171 4.171 18 C 0.129 3.871 19 N -0.491 5.491 20 C 0.055 3.945 21 C -0.142 4.142 22 C 0.103 3.897 23 O -0.583 6.583 24 C -0.109 4.109 25 C 0.050 3.950 26 C -0.139 4.139 27 C -0.061 4.061 28 H 0.232 0.768 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.274 0.726 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.395 0.605 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.153 0.847 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 3.456 22.047 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.126 4.126 3 C 0.116 3.884 4 N -0.158 5.158 5 C -0.474 4.474 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.511 5.511 9 Si 0.817 3.183 10 H -0.191 1.191 11 H -0.197 1.197 12 H -0.204 1.204 13 C 0.263 3.737 14 O -0.524 6.524 15 C -0.156 4.156 16 C -0.094 4.094 17 C -0.192 4.192 18 C 0.030 3.970 19 N -0.206 5.206 20 C -0.070 4.070 21 C -0.180 4.180 22 C 0.044 3.956 23 O -0.392 6.392 24 C -0.147 4.147 25 C -0.077 4.077 26 C -0.160 4.160 27 C -0.081 4.081 28 H 0.249 0.751 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.168 0.832 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.170 0.830 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.510 4.411 21.424 21.925 hybrid contribution 0.289 -1.342 -1.298 1.889 sum -1.221 3.068 20.126 20.395 Atomic orbital electron populations 1.25034 0.96183 1.02933 1.03828 1.23055 0.94514 0.97798 0.97263 1.18487 0.85246 0.94869 0.89788 1.43857 1.54604 1.09085 1.08221 1.19702 1.37229 1.04207 0.86268 0.90441 1.26017 0.94643 0.96157 1.03314 1.70088 1.28837 1.14820 1.37317 0.84936 0.78305 0.77928 0.77158 1.19093 1.19694 1.20449 1.18691 0.84246 0.81881 0.88856 1.90558 1.51228 1.55119 1.55508 1.19872 0.96809 1.05252 0.93623 1.21396 0.95649 0.96914 0.95449 1.21238 1.01149 1.01842 0.94933 1.19048 0.93852 0.93013 0.91065 1.58867 1.05471 1.56320 0.99914 1.22313 0.95659 0.97305 0.91684 1.22309 0.97776 1.02520 0.95367 1.21865 0.94190 0.96244 0.83321 1.86482 1.62500 1.69718 1.20473 1.21533 0.99664 1.01383 0.92098 1.22329 0.88532 0.99845 0.96974 1.20678 0.97274 1.03463 0.94546 1.20944 0.98032 0.95070 0.94061 0.75102 0.87948 0.90398 0.91526 0.86021 0.83185 0.93113 0.88933 0.90989 0.88509 0.91854 0.75505 0.91363 0.89708 0.89219 0.92374 0.82984 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.29 18.61 74.32 1.38 -8.91 16 2 C -0.12 -5.52 8.50 31.13 0.26 -5.25 16 3 C 0.24 11.03 4.76 84.57 0.40 11.43 16 4 N -0.44 -23.69 2.59 -649.16 -1.68 -25.37 16 5 C -0.35 -19.97 9.49 84.09 0.80 -19.18 16 6 H 0.08 4.82 7.21 -2.91 -0.02 4.79 16 7 C 0.00 0.06 5.24 84.95 0.45 0.50 16 8 N -0.87 -44.48 8.25 21.68 0.18 -44.30 16 9 Si 0.99 42.44 29.57 68.60 2.03 44.47 16 10 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.47 25.13 7.13 86.66 0.62 25.75 16 14 O -0.64 -38.73 16.63 -4.13 -0.07 -38.79 16 15 C -0.15 -6.37 4.65 -20.08 -0.09 -6.47 16 16 C -0.07 -2.75 7.73 22.40 0.17 -2.58 16 17 C -0.17 -4.85 8.77 22.25 0.20 -4.66 16 18 C 0.13 3.31 5.64 38.47 0.22 3.53 16 19 N -0.49 -9.78 4.68 -695.38 -3.26 -13.03 16 20 C 0.06 0.84 5.25 86.33 0.45 1.29 16 21 C -0.14 -1.66 5.72 30.65 0.18 -1.48 16 22 C 0.10 1.31 3.54 30.68 0.11 1.42 16 23 O -0.58 -7.86 13.32 -148.98 -1.99 -9.84 16 24 C -0.11 -1.65 5.75 30.65 0.18 -1.47 16 25 C 0.05 0.84 4.14 86.33 0.36 1.20 16 26 C -0.14 -3.80 9.11 22.25 0.20 -3.60 16 27 C -0.06 -2.17 9.69 22.40 0.22 -1.95 16 28 H 0.23 7.05 7.80 -4.41 -0.03 7.01 16 29 H 0.10 5.02 6.27 -2.39 -0.01 5.00 16 30 H 0.08 3.21 6.22 -2.39 -0.01 3.20 16 31 H 0.27 13.18 8.31 -92.70 -0.77 12.41 16 32 H 0.12 4.85 4.61 -2.91 -0.01 4.84 16 33 H 0.15 3.45 5.77 -2.91 -0.02 3.43 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 1.34 6.68 -2.39 -0.02 1.32 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.40 1.88 9.09 -74.06 -0.67 1.21 16 40 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.56 6.96 -2.38 -0.02 1.54 16 43 H 0.06 0.92 7.72 -2.39 -0.02 0.90 16 44 H 0.15 3.23 7.13 -2.91 -0.02 3.21 16 45 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -72.47 360.74 1.66 -70.81 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.35 Total: 26.49 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 6.09 Total: -10.43 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -4.76 Total: -82.70 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -2.05 Total: -48.64 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -72.47 1.66 -70.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490974762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.783 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds