Wall clock time and date at job start Tue Mar 31 2020 15:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09001 * 109.71066 * 20.77593 * 3 2 1 5 5 C 1.53295 * 109.68168 * 141.31989 * 3 2 1 6 6 O 1.42959 * 109.22365 * 172.02159 * 5 3 2 7 7 C 1.42956 * 114.17009 * 297.42048 * 6 5 3 8 8 C 1.52882 * 109.29959 * 62.44573 * 7 6 5 9 9 N 1.47147 * 108.60661 * 307.93869 * 8 7 6 10 10 C 1.34777 * 120.98117 * 230.49944 * 9 8 7 11 11 O 1.21592 * 120.00021 * 185.35782 * 10 9 8 12 12 N 1.34777 * 120.00091 * 5.35729 * 10 9 8 13 13 C 1.46502 * 120.00108 * 174.92823 * 12 10 9 14 14 H 1.09006 * 109.46788 * 34.99979 * 13 12 10 15 15 C 1.52999 * 109.46943 * 154.99860 * 13 12 10 16 16 C 1.50704 * 109.47350 * 294.99832 * 15 13 12 17 17 H 1.08004 * 119.99586 * 0.02562 * 16 15 13 18 18 C 1.37868 * 120.00196 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00182 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00125 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47248 * 89.99877 * 20 18 16 22 22 H 1.48498 * 109.47288 * 210.00291 * 20 18 16 23 23 H 1.48503 * 109.46831 * 329.99856 * 20 18 16 24 24 C 1.50698 * 109.46762 * 275.00015 * 13 12 10 25 25 C 1.38243 * 119.99833 * 140.00559 * 24 13 12 26 26 C 1.38233 * 120.00109 * 179.97438 * 25 24 13 27 27 C 1.38236 * 119.99566 * 0.02562 * 26 25 24 28 28 C 1.38234 * 120.00539 * 359.97130 * 27 26 25 29 29 C 1.38226 * 120.00266 * 319.97381 * 24 13 12 30 30 H 4.19116 * 14.98187 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.50996 * 291.94579 * 5 3 2 32 32 H 1.08999 * 109.51052 * 52.04726 * 5 3 2 33 33 H 1.08993 * 109.51835 * 182.50442 * 7 6 5 34 34 H 1.08998 * 109.50990 * 302.60674 * 7 6 5 35 35 H 1.08999 * 109.61966 * 188.12091 * 8 7 6 36 36 H 1.08994 * 109.52332 * 67.70278 * 8 7 6 37 37 H 0.96997 * 120.00026 * 354.92027 * 12 10 9 38 38 H 1.08997 * 109.47269 * 55.00342 * 15 13 12 39 39 H 1.09003 * 109.46649 * 174.99955 * 15 13 12 40 40 H 0.97007 * 120.00096 * 179.97438 * 19 18 16 41 41 H 1.08000 * 119.99813 * 359.96994 * 25 24 13 42 42 H 1.07992 * 120.00340 * 179.97438 * 26 25 24 43 43 H 1.07998 * 119.99645 * 179.70309 * 27 26 25 44 44 H 1.08000 * 120.00035 * 179.97438 * 28 27 26 45 45 H 1.08006 * 119.99851 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0141 -0.9586 -0.3640 5 6 3.1618 1.1277 -0.9021 6 8 4.5790 1.2399 -0.7514 7 6 5.0012 1.5934 0.5678 8 6 4.5787 0.4958 1.5446 9 7 3.1416 0.2357 1.3656 10 6 2.3028 0.2188 2.4204 11 8 1.1379 -0.0935 2.2660 12 7 2.7554 0.5479 3.6465 13 6 1.8220 0.6377 4.7722 14 1 1.0443 -0.1179 4.6603 15 6 2.5778 0.4017 6.0814 16 6 3.1032 -1.0105 6.1107 17 1 2.9170 -1.6733 5.2785 18 6 3.8214 -1.4563 7.1998 19 7 4.2794 -2.6888 7.2256 20 14 4.1428 -0.3102 8.6395 21 1 3.0416 -0.4358 9.6276 22 1 5.4302 -0.6740 9.2840 23 1 4.2123 1.0905 8.1510 24 6 1.1928 2.0068 4.7950 25 6 -0.1492 2.1458 5.0965 26 6 -0.7263 3.4017 5.1179 27 6 0.0385 4.5186 4.8374 28 6 1.3804 4.3796 4.5360 29 6 1.9576 3.1237 4.5151 30 1 -1.0499 -0.0008 -0.0008 31 1 2.9230 0.9005 -1.9410 32 1 2.6891 2.0675 -0.6169 33 1 6.0856 1.7013 0.5865 34 1 4.5365 2.5355 0.8586 35 1 4.7679 0.8231 2.5670 36 1 5.1447 -0.4126 1.3388 37 1 3.6991 0.7253 3.7837 38 1 3.4110 1.1009 6.1510 39 1 1.9028 0.5559 6.9233 40 1 4.7851 -3.0024 7.9918 41 1 -0.7467 1.2732 5.3152 42 1 -1.7747 3.5104 5.3530 43 1 -0.4134 5.4994 4.8494 44 1 1.9777 5.2522 4.3164 45 1 3.0061 3.0151 4.2797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491374235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:36 Heat of formation + Delta-G solvation = 13.849625 kcal Electronic energy + Delta-G solvation = -28640.633320 eV Core-core repulsion = 24817.973592 eV Total energy + Delta-G solvation = -3822.659728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.79845 -40.36318 -39.30353 -37.05507 -35.85738 -35.07740 -34.33193 -32.25408 -31.68833 -31.53644 -30.97782 -28.78683 -26.68647 -25.48439 -23.64642 -23.47110 -23.20251 -21.79216 -20.96769 -20.05289 -19.05409 -18.37760 -17.84258 -17.51021 -17.14242 -16.72853 -16.42535 -16.33236 -16.06235 -15.97919 -15.91605 -15.26434 -15.02655 -14.79734 -14.61715 -14.23186 -14.14852 -13.94502 -13.82502 -13.49548 -13.28836 -13.00029 -12.64317 -12.49490 -12.44143 -12.24547 -11.96504 -11.92608 -11.73920 -11.71476 -11.42979 -11.30277 -11.27844 -10.79165 -10.10400 -10.03600 -9.77003 -9.57716 -9.44893 -8.28377 -6.33546 0.48291 0.54817 1.30126 1.37511 1.38122 1.49258 1.95025 2.18816 2.24726 2.35114 2.76660 2.88232 3.02868 3.10961 3.41234 3.75994 3.90673 3.94089 4.01043 4.05363 4.12711 4.19573 4.24172 4.31020 4.36617 4.52576 4.58147 4.66579 4.72147 4.74415 4.80930 4.88124 5.00038 5.02108 5.13471 5.17041 5.25067 5.38264 5.53927 5.58472 5.63472 5.64789 5.78866 5.95159 6.01336 6.16827 6.26071 6.73266 6.86136 6.99105 7.30539 7.61786 8.88076 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.005038 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.291166 B = 5556.351945 C = 7088.122924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.205 4.205 3 C 0.240 3.760 4 H 0.099 0.901 5 C 0.071 3.929 6 O -0.380 6.380 7 C 0.051 3.949 8 C 0.071 3.929 9 N -0.634 5.634 10 C 0.701 3.299 11 O -0.606 6.606 12 N -0.713 5.713 13 C 0.224 3.776 14 H 0.052 0.948 15 C -0.003 4.003 16 C -0.518 4.518 17 H 0.027 0.973 18 C 0.012 3.988 19 N -0.948 5.948 20 Si 0.946 3.054 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.241 1.241 24 C -0.099 4.099 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.127 4.127 28 C -0.123 4.123 29 C -0.118 4.118 30 H 0.232 0.768 31 H 0.133 0.867 32 H 0.056 0.944 33 H 0.139 0.861 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.401 0.599 38 H 0.037 0.963 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.111 0.889 42 H 0.142 0.858 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 16.598 -12.796 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.205 4.205 3 C 0.137 3.863 4 H 0.116 0.884 5 C -0.007 4.007 6 O -0.298 6.298 7 C -0.026 4.026 8 C -0.051 4.051 9 N -0.374 5.374 10 C 0.403 3.597 11 O -0.486 6.486 12 N -0.369 5.369 13 C 0.118 3.882 14 H 0.070 0.930 15 C -0.041 4.041 16 C -0.556 4.556 17 H 0.045 0.955 18 C -0.185 4.185 19 N -0.588 5.588 20 Si 0.769 3.231 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.164 1.164 24 C -0.100 4.100 25 C -0.149 4.149 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.141 4.141 29 C -0.136 4.136 30 H 0.248 0.752 31 H 0.151 0.849 32 H 0.074 0.926 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.238 0.762 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.129 0.871 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.164 0.836 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.767 16.223 -12.938 20.826 hybrid contribution 0.146 -0.722 1.319 1.510 sum -1.620 15.501 -11.620 19.440 Atomic orbital electron populations 1.25219 0.96459 0.98324 0.99131 1.22361 0.94185 1.02745 1.01242 1.18661 0.84656 1.01046 0.81927 0.88385 1.22939 0.81347 0.95880 1.00506 1.87973 1.21389 1.90427 1.30039 1.23075 1.02705 0.95440 0.81345 1.22530 0.79465 1.01153 1.01990 1.47446 1.08456 1.76638 1.04863 1.16085 0.84547 0.78027 0.81057 1.90950 1.17873 1.56126 1.83625 1.45123 1.11623 1.73801 1.06333 1.19381 0.90761 0.92277 0.85770 0.93012 1.19721 0.95930 0.95688 0.92736 1.21157 1.33674 0.97032 1.03735 0.95462 1.25901 0.94967 0.96442 1.01224 1.70071 1.38352 1.18388 1.32024 0.85732 0.77671 0.80606 0.79060 1.19887 1.21002 1.16373 1.20418 0.94670 0.95516 0.99443 1.21160 0.94385 0.98544 1.00800 1.21367 1.00911 0.91890 0.99884 1.21468 0.94162 0.99404 0.99474 1.21429 0.95880 0.97094 0.99693 1.21044 0.99936 0.92347 1.00265 0.75158 0.84949 0.92560 0.84322 0.92043 0.88494 0.89822 0.76168 0.94446 0.95242 0.92534 0.87100 0.84015 0.83239 0.83558 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 17.85 74.32 1.33 -4.04 16 2 C -0.20 -6.58 10.07 31.13 0.31 -6.26 16 3 C 0.24 6.59 3.53 43.16 0.15 6.74 16 4 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 5 C 0.07 1.45 6.25 72.08 0.45 1.90 16 6 O -0.38 -7.65 10.74 -148.98 -1.60 -9.25 16 7 C 0.05 0.87 6.97 71.94 0.50 1.37 16 8 C 0.07 1.60 6.61 86.22 0.57 2.17 16 9 N -0.63 -19.34 3.03 -822.32 -2.49 -21.83 16 10 C 0.70 27.27 8.12 179.05 1.45 28.72 16 11 O -0.61 -27.66 12.20 -4.01 -0.05 -27.70 16 12 N -0.71 -26.93 3.95 -461.40 -1.82 -28.75 16 13 C 0.22 9.29 2.16 44.24 0.10 9.39 16 14 H 0.05 2.53 7.37 -2.38 -0.02 2.51 16 15 C 0.00 -0.13 3.56 29.85 0.11 -0.03 16 16 C -0.52 -28.89 9.39 25.60 0.24 -28.65 16 17 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 18 C 0.01 0.67 5.47 84.65 0.46 1.14 16 19 N -0.95 -58.37 13.96 21.44 0.30 -58.07 16 20 Si 0.95 42.63 27.47 68.60 1.88 44.52 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 24 C -0.10 -3.52 4.91 -19.87 -0.10 -3.62 16 25 C -0.13 -4.33 9.67 22.27 0.22 -4.12 16 26 C -0.12 -3.22 10.05 22.27 0.22 -2.99 16 27 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 28 C -0.12 -2.98 10.05 22.27 0.22 -2.75 16 29 C -0.12 -3.52 9.32 22.27 0.21 -3.31 16 30 H 0.23 5.62 7.80 -4.42 -0.03 5.59 16 31 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 33 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 2.10 5.66 -2.39 -0.01 2.09 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.40 13.53 6.11 -92.71 -0.57 12.96 16 38 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 39 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 40 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 41 H 0.11 3.76 8.04 -2.91 -0.02 3.74 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 45 H 0.12 3.33 7.72 -2.91 -0.02 3.31 16 Total: -1.00 -76.67 372.90 3.27 -73.40 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: 0.37 Total: 34.69 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 6.67 Total: -7.01 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.01 Total: -108.65 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -1.65 Total: -36.95 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.52 kcal Total: -76.67 3.27 -73.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491374235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.251 kcal (2) G-P(sol) polarization free energy of solvation -76.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds