Wall clock time and date at job start Tue Mar 31 2020 16:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 N 1.46499 * 109.46867 * 119.99808 * 2 1 3 5 5 C 1.46505 * 119.99931 * 124.38073 * 4 2 1 6 6 C 1.52994 * 109.47101 * 269.99903 * 5 4 2 7 7 C 1.47196 * 109.47331 * 180.02562 * 6 5 4 8 8 N 5.65194 * 113.37792 * 172.03404 * 2 1 3 9 9 C 1.34775 * 120.00384 * 304.37595 * 4 2 1 10 10 O 1.21719 * 120.00446 * 174.33061 * 9 4 2 11 11 C 1.46255 * 119.99482 * 354.32988 * 9 4 2 12 12 C 1.35027 * 119.99958 * 178.09408 * 11 9 4 13 13 C 1.46963 * 119.99815 * 341.18714 * 12 11 9 14 14 C 1.40025 * 120.09789 * 319.96842 * 13 12 11 15 15 C 1.37603 * 119.89395 * 179.69761 * 14 13 12 16 16 C 1.39171 * 120.10552 * 0.60449 * 15 14 13 17 17 O 1.35561 * 119.90222 * 179.69219 * 16 15 14 18 18 C 1.34778 * 117.00464 * 185.16665 * 17 16 15 19 19 H 1.08001 * 120.00036 * 5.11025 * 18 17 16 20 20 C 1.38716 * 120.00523 * 185.11316 * 18 17 16 21 21 N 1.31512 * 120.00322 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00030 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47209 * 89.99539 * 22 20 18 24 24 H 1.48494 * 109.47571 * 209.99803 * 22 20 18 25 25 H 1.48503 * 109.47176 * 330.00111 * 22 20 18 26 26 C 1.39180 * 120.19788 * 359.67464 * 16 15 14 27 27 C 1.37593 * 120.10418 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47406 * 304.98867 * 1 2 3 29 29 H 1.08996 * 109.46942 * 64.99646 * 1 2 3 30 30 H 1.09005 * 109.46927 * 184.99048 * 1 2 3 31 31 H 1.08997 * 109.46804 * 239.99932 * 2 1 3 32 32 H 1.08994 * 109.46974 * 185.19016 * 3 2 1 33 33 H 1.09000 * 109.46858 * 305.18665 * 3 2 1 34 34 H 1.09002 * 109.47026 * 65.18403 * 3 2 1 35 35 H 1.09000 * 109.46885 * 29.99897 * 5 4 2 36 36 H 1.08999 * 109.47102 * 149.99763 * 5 4 2 37 37 H 1.09001 * 109.46808 * 300.00062 * 6 5 4 38 38 H 1.09006 * 109.47512 * 59.99624 * 6 5 4 39 39 H 1.07999 * 120.00483 * 358.09601 * 11 9 4 40 40 H 1.07999 * 120.00130 * 161.17850 * 12 11 9 41 41 H 1.08002 * 120.04918 * 0.02562 * 14 13 12 42 42 H 1.08004 * 119.94363 * 180.27951 * 15 14 13 43 43 H 0.96995 * 120.00387 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.94783 * 179.97438 * 26 16 15 45 45 H 1.08003 * 120.05145 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9379 -1.8233 1.0640 6 6 2.1357 -3.1214 0.9543 7 6 3.0596 -4.2596 0.8221 8 7 3.7727 -5.1379 0.7190 9 6 1.6216 -0.2838 2.4183 10 8 1.9434 -0.9191 3.4055 11 6 0.8044 0.9210 2.5584 12 6 0.3747 1.3072 3.7788 13 6 0.3569 0.3454 4.8899 14 6 -0.0440 -0.9776 4.6670 15 6 -0.0532 -1.8762 5.7090 16 6 0.3232 -1.4689 6.9854 17 8 0.3066 -2.3561 8.0103 18 6 0.5781 -1.8758 9.2399 19 1 0.7143 -0.8145 9.3872 20 6 0.6828 -2.7444 10.3164 21 7 0.9482 -2.2757 11.5162 22 14 0.4481 -4.5799 10.0617 23 1 1.7568 -5.2073 9.7470 24 1 -0.1058 -5.1847 11.2996 25 1 -0.4931 -4.8071 8.9357 26 6 0.7168 -0.1534 7.2128 27 6 0.7350 0.7506 6.1757 28 1 -0.3634 0.5893 0.8419 29 1 -0.3633 0.4344 -0.9313 30 1 -0.3633 -1.0238 0.0894 31 1 1.8933 -0.5138 -0.8900 32 1 3.1260 1.4439 -0.0930 33 1 1.6028 1.9824 -0.8399 34 1 1.7545 1.9289 0.9328 35 1 3.5458 -1.6951 0.1684 36 1 3.5858 -1.8694 1.9393 37 1 1.5278 -3.2495 1.8500 38 1 1.4877 -3.0754 0.0790 39 1 0.5447 1.5019 1.6858 40 1 0.0443 2.3230 3.9385 41 1 -0.3405 -1.2934 3.6776 42 1 -0.3580 -2.8980 5.5370 43 1 1.0211 -2.8830 12.2690 44 1 1.0077 0.1585 8.2051 45 1 1.0410 1.7711 6.3531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491403441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:13 Heat of formation + Delta-G solvation = 36.000066 kcal Electronic energy + Delta-G solvation = -27516.057878 eV Core-core repulsion = 23694.358665 eV Total energy + Delta-G solvation = -3821.699213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.49283 -39.05771 -37.35799 -36.78403 -36.24263 -34.10123 -32.68696 -32.20875 -30.37552 -30.22254 -28.38499 -27.53017 -25.69122 -24.79997 -23.21539 -22.07706 -21.64024 -20.28689 -18.73090 -18.00379 -17.80640 -17.28195 -16.85572 -16.17914 -15.31342 -15.09786 -14.83527 -14.64496 -14.49439 -14.01044 -13.95948 -13.78306 -13.70865 -13.49006 -13.29973 -13.15339 -12.95239 -12.69893 -12.65208 -12.48205 -12.26218 -12.18099 -12.05237 -11.92299 -11.58133 -11.43551 -11.25032 -11.17022 -10.88820 -10.69694 -10.44856 -10.15392 -9.62849 -9.44923 -9.19623 -8.87636 -8.75331 -8.08365 -7.01046 -6.45164 -4.08660 1.07218 2.28987 2.45986 2.59900 2.61430 2.88057 3.21839 3.26485 3.40183 3.46029 3.89460 4.22336 4.40863 4.54546 4.60092 4.64846 4.84325 4.86941 4.88631 4.92352 5.06916 5.09291 5.12424 5.28284 5.37251 5.44798 5.48986 5.52953 5.54658 5.63155 5.66886 5.72967 5.91004 5.92321 6.14050 6.18830 6.29283 6.46613 6.49202 6.63633 6.88482 7.14596 7.27146 7.34439 7.36969 7.40002 7.63790 7.80855 8.03042 8.37884 8.89960 9.54024 10.62050 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.003277 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.437212 B = 8543.559946 C =10213.547142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.139 3.861 3 C -0.185 4.185 4 N -0.616 5.616 5 C 0.125 3.875 6 C -0.044 4.044 7 C 0.212 3.788 8 N -0.437 5.437 9 C 0.548 3.452 10 O -0.510 6.510 11 C -0.285 4.285 12 C 0.025 3.975 13 C -0.179 4.179 14 C 0.006 3.994 15 C -0.203 4.203 16 C 0.177 3.823 17 O -0.211 6.211 18 C -0.388 4.388 19 H 0.108 0.892 20 C 0.064 3.936 21 N -0.875 5.875 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.258 1.258 26 C -0.236 4.236 27 C -0.043 4.043 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.280 0.720 44 H 0.132 0.868 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 8.515 -25.379 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.035 3.965 3 C -0.243 4.243 4 N -0.351 5.351 5 C 0.000 4.000 6 C -0.086 4.086 7 C -0.107 4.107 8 N -0.114 5.114 9 C 0.340 3.660 10 O -0.386 6.386 11 C -0.305 4.305 12 C 0.006 3.994 13 C -0.180 4.180 14 C -0.013 4.013 15 C -0.222 4.222 16 C 0.123 3.877 17 O -0.115 6.115 18 C -0.463 4.463 19 H 0.126 0.874 20 C -0.140 4.140 21 N -0.512 5.512 22 Si 0.730 3.270 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.182 1.182 26 C -0.255 4.255 27 C -0.061 4.061 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.091 0.909 44 H 0.150 0.850 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.696 6.543 -24.715 25.576 hybrid contribution -0.203 -0.295 0.006 0.358 sum -0.899 6.248 -24.709 25.503 Atomic orbital electron populations 1.22613 0.94720 1.03378 1.03365 1.21054 0.94480 0.93374 0.87612 1.22616 1.01873 0.96073 1.03745 1.48023 1.48553 1.32165 1.06335 1.21207 0.91476 0.83374 1.03902 1.19732 0.95233 0.87585 1.06008 1.29009 0.94186 0.94427 0.93052 1.81242 1.09955 1.11048 1.09172 1.18450 0.80727 0.84726 0.82102 1.90999 1.56027 1.55307 1.36241 1.23244 1.07496 1.01167 0.98629 1.22420 0.88376 0.96834 0.91782 1.18377 1.12582 0.94257 0.92774 1.20467 0.93721 0.91064 0.95998 1.20011 1.11150 1.00028 0.90995 1.19297 0.91654 0.88926 0.87780 1.83516 1.77074 1.35408 1.15472 1.20829 1.49305 0.95940 0.80237 0.87444 1.24494 0.95459 1.00247 0.93766 1.69621 1.45700 1.36642 0.99286 0.86188 0.79571 0.83009 0.78232 1.19809 1.20694 1.18247 1.21092 1.10215 0.93824 1.00407 1.20845 0.95807 0.97991 0.91463 0.90178 0.91537 0.91950 0.89437 0.92270 0.91528 0.90084 0.90086 0.88934 0.86600 0.87484 0.83955 0.86037 0.87780 0.86816 0.90938 0.85038 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 8.90 37.16 0.33 -0.59 16 2 C 0.14 0.74 3.27 -67.93 -0.22 0.52 16 3 C -0.19 -0.96 9.00 37.16 0.33 -0.62 16 4 N -0.62 -5.14 2.42 -167.80 -0.41 -5.55 16 5 C 0.13 0.98 5.28 -4.04 -0.02 0.96 16 6 C -0.04 -0.32 6.03 -29.52 -0.18 -0.50 16 7 C 0.21 2.21 15.43 -20.76 -0.32 1.89 16 8 N -0.44 -5.98 18.54 42.15 0.78 -5.20 16 9 C 0.55 6.58 6.21 -13.04 -0.08 6.50 16 10 O -0.51 -8.48 12.10 5.17 0.06 -8.41 16 11 C -0.29 -2.94 6.45 -37.50 -0.24 -3.18 16 12 C 0.03 0.31 9.79 -37.19 -0.36 -0.06 16 13 C -0.18 -2.97 4.53 -105.03 -0.48 -3.45 16 14 C 0.01 0.11 6.75 -39.14 -0.26 -0.16 16 15 C -0.20 -4.16 9.97 -39.47 -0.39 -4.55 16 16 C 0.18 4.18 6.66 -38.89 -0.26 3.92 16 17 O -0.21 -5.65 8.57 0.78 0.01 -5.65 16 18 C -0.39 -11.00 9.90 30.91 0.31 -10.70 16 19 H 0.11 3.10 5.49 -52.49 -0.29 2.81 16 20 C 0.06 1.81 5.49 -17.51 -0.10 1.72 16 21 N -0.88 -25.32 13.96 55.48 0.77 -24.54 16 22 Si 0.90 21.91 28.62 -169.99 -4.86 17.05 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.24 -5.18 9.11 -39.47 -0.36 -5.54 16 27 C -0.04 -0.78 9.78 -39.15 -0.38 -1.16 16 28 H 0.08 0.48 4.59 -51.93 -0.24 0.24 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.32 7.83 -51.93 -0.41 -0.08 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.50 4.63 -51.93 -0.24 0.26 16 35 H 0.08 0.45 7.96 -51.93 -0.41 0.03 16 36 H 0.09 0.96 7.51 -51.93 -0.39 0.57 16 37 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.14 1.03 3.46 -52.49 -0.18 0.85 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.10 1.59 7.05 -52.49 -0.37 1.22 16 42 H 0.11 2.21 8.06 -52.48 -0.42 1.78 16 43 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.13 3.02 5.68 -52.49 -0.30 2.72 16 45 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -33.74 373.63 -6.47 -40.21 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.77 Total: 1.46 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.69 Total: -15.00 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 1.15 Total: -35.29 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.74 -6.47 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491403441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.210 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds