Wall clock time and date at job start Tue Mar 31 2020 16:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 N 1.46499 * 109.46867 * 119.99808 * 2 1 3 5 5 C 1.46505 * 119.99931 * 124.38073 * 4 2 1 6 6 C 1.52994 * 109.47101 * 269.99903 * 5 4 2 7 7 C 1.47196 * 109.47331 * 180.02562 * 6 5 4 8 8 N 5.65194 * 113.37792 * 172.03404 * 2 1 3 9 9 C 1.34775 * 120.00384 * 304.37595 * 4 2 1 10 10 O 1.21719 * 120.00446 * 174.33061 * 9 4 2 11 11 C 1.46255 * 119.99482 * 354.32988 * 9 4 2 12 12 C 1.35027 * 119.99958 * 178.09408 * 11 9 4 13 13 C 1.46963 * 119.99815 * 341.18714 * 12 11 9 14 14 C 1.40025 * 120.09789 * 319.96842 * 13 12 11 15 15 C 1.37603 * 119.89395 * 179.69761 * 14 13 12 16 16 C 1.39171 * 120.10552 * 0.60449 * 15 14 13 17 17 O 1.35561 * 119.90222 * 179.69219 * 16 15 14 18 18 C 1.34778 * 117.00464 * 185.16665 * 17 16 15 19 19 H 1.08001 * 120.00036 * 5.11025 * 18 17 16 20 20 C 1.38716 * 120.00523 * 185.11316 * 18 17 16 21 21 N 1.31512 * 120.00322 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00030 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47209 * 89.99539 * 22 20 18 24 24 H 1.48494 * 109.47571 * 209.99803 * 22 20 18 25 25 H 1.48503 * 109.47176 * 330.00111 * 22 20 18 26 26 C 1.39180 * 120.19788 * 359.67464 * 16 15 14 27 27 C 1.37593 * 120.10418 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47406 * 304.98867 * 1 2 3 29 29 H 1.08996 * 109.46942 * 64.99646 * 1 2 3 30 30 H 1.09005 * 109.46927 * 184.99048 * 1 2 3 31 31 H 1.08997 * 109.46804 * 239.99932 * 2 1 3 32 32 H 1.08994 * 109.46974 * 185.19016 * 3 2 1 33 33 H 1.09000 * 109.46858 * 305.18665 * 3 2 1 34 34 H 1.09002 * 109.47026 * 65.18403 * 3 2 1 35 35 H 1.09000 * 109.46885 * 29.99897 * 5 4 2 36 36 H 1.08999 * 109.47102 * 149.99763 * 5 4 2 37 37 H 1.09001 * 109.46808 * 300.00062 * 6 5 4 38 38 H 1.09006 * 109.47512 * 59.99624 * 6 5 4 39 39 H 1.07999 * 120.00483 * 358.09601 * 11 9 4 40 40 H 1.07999 * 120.00130 * 161.17850 * 12 11 9 41 41 H 1.08002 * 120.04918 * 0.02562 * 14 13 12 42 42 H 1.08004 * 119.94363 * 180.27951 * 15 14 13 43 43 H 0.96995 * 120.00387 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.94783 * 179.97438 * 26 16 15 45 45 H 1.08003 * 120.05145 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9379 -1.8233 1.0640 6 6 2.1357 -3.1214 0.9543 7 6 3.0596 -4.2596 0.8221 8 7 3.7727 -5.1379 0.7190 9 6 1.6216 -0.2838 2.4183 10 8 1.9434 -0.9191 3.4055 11 6 0.8044 0.9210 2.5584 12 6 0.3747 1.3072 3.7788 13 6 0.3569 0.3454 4.8899 14 6 -0.0440 -0.9776 4.6670 15 6 -0.0532 -1.8762 5.7090 16 6 0.3232 -1.4689 6.9854 17 8 0.3066 -2.3561 8.0103 18 6 0.5781 -1.8758 9.2399 19 1 0.7143 -0.8145 9.3872 20 6 0.6828 -2.7444 10.3164 21 7 0.9482 -2.2757 11.5162 22 14 0.4481 -4.5799 10.0617 23 1 1.7568 -5.2073 9.7470 24 1 -0.1058 -5.1847 11.2996 25 1 -0.4931 -4.8071 8.9357 26 6 0.7168 -0.1534 7.2128 27 6 0.7350 0.7506 6.1757 28 1 -0.3634 0.5893 0.8419 29 1 -0.3633 0.4344 -0.9313 30 1 -0.3633 -1.0238 0.0894 31 1 1.8933 -0.5138 -0.8900 32 1 3.1260 1.4439 -0.0930 33 1 1.6028 1.9824 -0.8399 34 1 1.7545 1.9289 0.9328 35 1 3.5458 -1.6951 0.1684 36 1 3.5858 -1.8694 1.9393 37 1 1.5278 -3.2495 1.8500 38 1 1.4877 -3.0754 0.0790 39 1 0.5447 1.5019 1.6858 40 1 0.0443 2.3230 3.9385 41 1 -0.3405 -1.2934 3.6776 42 1 -0.3580 -2.8980 5.5370 43 1 1.0211 -2.8830 12.2690 44 1 1.0077 0.1585 8.2051 45 1 1.0410 1.7711 6.3531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491403441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:11 Heat of formation + Delta-G solvation = 15.459263 kcal Electronic energy + Delta-G solvation = -27516.948594 eV Core-core repulsion = 23694.358665 eV Total energy + Delta-G solvation = -3822.589929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42614 -40.67950 -38.60365 -37.84397 -37.26215 -35.02621 -34.44700 -33.43468 -31.82894 -31.04632 -29.79135 -27.89085 -27.41632 -25.92147 -24.01557 -23.62307 -22.81019 -21.39425 -19.89850 -19.54610 -19.02562 -18.69297 -17.60740 -17.17658 -16.59603 -16.22305 -16.03333 -15.83368 -15.65788 -15.41077 -15.29296 -15.19150 -14.55169 -14.45265 -14.40286 -14.20529 -14.09759 -13.86447 -13.81479 -13.70133 -13.50615 -13.15621 -12.88564 -12.84357 -12.64015 -12.61566 -12.44536 -12.27451 -11.98354 -11.95729 -11.81756 -11.32844 -11.17632 -10.96630 -10.64596 -10.26439 -9.75977 -9.47868 -8.55119 -8.52594 -6.22782 -0.04199 0.71478 1.12759 1.27811 1.34414 1.48723 1.65952 1.77917 2.14584 2.25635 2.50457 2.80637 3.11731 3.16076 3.21364 3.77888 4.01136 4.06740 4.11150 4.12705 4.18035 4.20102 4.39884 4.51278 4.52009 4.57303 4.61617 4.80066 4.83588 4.93897 4.95915 5.00251 5.05798 5.11771 5.14403 5.20591 5.25124 5.41241 5.46620 5.52538 5.57269 5.68467 5.79639 5.84125 5.88983 5.91883 6.29238 6.55610 6.59479 6.82047 7.45939 7.58928 8.59153 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.003277 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.437212 B = 8543.559946 C =10213.547142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.131 3.869 3 C -0.185 4.185 4 N -0.602 5.602 5 C 0.123 3.877 6 C -0.035 4.035 7 C 0.239 3.761 8 N -0.498 5.498 9 C 0.536 3.464 10 O -0.564 6.564 11 C -0.241 4.241 12 C -0.005 4.005 13 C -0.144 4.144 14 C 0.009 3.991 15 C -0.207 4.207 16 C 0.131 3.869 17 O -0.245 6.245 18 C -0.399 4.399 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.921 5.921 22 Si 0.968 3.032 23 H -0.270 1.270 24 H -0.263 1.263 25 H -0.263 1.263 26 C -0.252 4.252 27 C -0.055 4.055 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.186 0.814 40 H 0.162 0.838 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.285 0.715 44 H 0.106 0.894 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.922 10.243 -31.066 32.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.029 3.971 3 C -0.243 4.243 4 N -0.335 5.335 5 C -0.001 4.001 6 C -0.076 4.076 7 C -0.079 4.079 8 N -0.177 5.177 9 C 0.328 3.672 10 O -0.444 6.444 11 C -0.261 4.261 12 C -0.024 4.024 13 C -0.145 4.145 14 C -0.009 4.009 15 C -0.226 4.226 16 C 0.081 3.919 17 O -0.152 6.152 18 C -0.475 4.475 19 H 0.099 0.901 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.790 3.210 23 H -0.196 1.196 24 H -0.187 1.187 25 H -0.187 1.187 26 C -0.271 4.271 27 C -0.073 4.073 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.166 0.834 39 H 0.202 0.798 40 H 0.180 0.820 41 H 0.152 0.848 42 H 0.136 0.864 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.688 8.313 -30.502 31.660 hybrid contribution 0.154 -0.506 1.133 1.251 sum -1.533 7.807 -29.369 30.428 Atomic orbital electron populations 1.22618 0.93894 1.03367 1.04151 1.21422 0.95044 0.93667 0.86923 1.22611 1.01778 0.95750 1.04113 1.48074 1.47331 1.31710 1.06362 1.21256 0.91391 0.83499 1.03994 1.19853 0.94614 0.85879 1.07229 1.29522 0.93197 0.93972 0.91171 1.81272 1.11942 1.13050 1.11392 1.18896 0.80742 0.84949 0.82574 1.91007 1.57986 1.57056 1.38351 1.23755 1.03561 0.99510 0.99256 1.22608 0.91583 0.97786 0.90438 1.18935 1.07384 0.94690 0.93497 1.20806 0.92812 0.91101 0.96213 1.20281 1.10712 1.01127 0.90477 1.19800 0.94135 0.89534 0.88404 1.83457 1.80428 1.36159 1.15185 1.20738 1.49836 0.95133 0.81786 0.90072 1.25257 0.95546 1.04458 0.93425 1.69700 1.48359 1.38090 1.00035 0.85266 0.79349 0.77926 0.78470 1.19562 1.18692 1.18727 1.21113 1.11083 0.94339 1.00574 1.21190 0.95936 0.98822 0.91381 0.91121 0.89281 0.92098 0.86637 0.92809 0.89246 0.91107 0.86933 0.92067 0.87805 0.83381 0.79796 0.82028 0.84832 0.86351 0.90507 0.87638 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 8.90 71.98 0.64 -0.03 16 2 C 0.13 0.61 3.27 44.99 0.15 0.76 16 3 C -0.19 -0.82 9.00 71.98 0.65 -0.17 16 4 N -0.60 -7.36 2.42 -802.99 -1.95 -9.30 16 5 C 0.12 1.53 5.28 86.38 0.46 1.98 16 6 C -0.03 -0.39 6.03 28.79 0.17 -0.22 16 7 C 0.24 4.59 15.43 89.44 1.38 5.97 16 8 N -0.50 -13.40 18.54 20.00 0.37 -13.03 16 9 C 0.54 10.88 6.21 86.33 0.54 11.42 16 10 O -0.56 -17.73 12.10 -4.41 -0.05 -17.78 16 11 C -0.24 -3.72 6.45 23.62 0.15 -3.57 16 12 C 0.00 -0.10 9.79 23.82 0.23 0.14 16 13 C -0.14 -4.48 4.53 -20.13 -0.09 -4.57 16 14 C 0.01 0.30 6.75 22.55 0.15 0.45 16 15 C -0.21 -8.69 9.97 22.34 0.22 -8.46 16 16 C 0.13 6.56 6.66 22.72 0.15 6.71 16 17 O -0.25 -14.12 8.57 -20.13 -0.17 -14.30 16 18 C -0.40 -24.53 9.90 67.93 0.67 -23.86 16 19 H 0.08 5.21 5.49 -2.91 -0.02 5.20 16 20 C 0.01 0.70 5.49 84.86 0.47 1.17 16 21 N -0.92 -56.56 13.96 21.62 0.30 -56.25 16 22 Si 0.97 47.48 28.62 68.60 1.96 49.44 16 23 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 26 C -0.25 -11.78 9.11 22.34 0.20 -11.58 16 27 C -0.06 -2.01 9.78 22.55 0.22 -1.78 16 28 H 0.07 0.38 4.59 -2.39 -0.01 0.37 16 29 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.12 0.03 7.83 -2.39 -0.02 0.01 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.07 0.45 4.63 -2.39 -0.01 0.44 16 35 H 0.11 0.73 7.96 -2.39 -0.02 0.71 16 36 H 0.06 1.20 7.51 -2.39 -0.02 1.18 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.15 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.19 1.41 3.46 -2.91 -0.01 1.40 16 40 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.13 3.66 7.05 -2.91 -0.02 3.64 16 42 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 43 H 0.29 16.02 8.31 -92.71 -0.77 15.25 16 44 H 0.11 5.39 5.68 -2.91 -0.02 5.38 16 45 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -83.32 373.63 7.85 -75.46 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.02 Total: 11.41 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 6.37 Total: -25.65 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.27 Total: -78.59 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.23 Total: -32.08 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.96 Total: 49.44 kcal Total: -83.32 7.85 -75.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491403441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.922 kcal (2) G-P(sol) polarization free energy of solvation -83.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds