Wall clock time and date at job start Tue Mar 31 2020 15:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08997 * 109.53940 * 219.79320 * 3 2 1 5 5 C 1.53098 * 109.50822 * 339.90280 * 3 2 1 6 6 O 1.43009 * 109.25641 * 176.78733 * 5 3 2 7 7 C 1.43021 * 113.73819 * 301.32489 * 6 5 3 8 8 C 1.53096 * 109.25583 * 58.67698 * 7 6 5 9 9 N 1.47006 * 109.50617 * 99.68607 * 3 2 1 10 10 C 1.46901 * 111.00038 * 57.66940 * 9 3 2 11 11 C 1.50701 * 109.47292 * 183.26626 * 10 9 3 12 12 O 1.21289 * 119.99947 * 5.42613 * 11 10 9 13 13 N 1.34776 * 120.00128 * 185.15708 * 11 10 9 14 14 C 1.46500 * 119.99835 * 184.31591 * 13 11 10 15 15 C 1.50708 * 109.47122 * 89.99983 * 14 13 11 16 16 H 1.08005 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00148 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00003 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00264 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47065 * 119.99612 * 19 17 15 22 22 H 1.48497 * 109.47473 * 240.00239 * 19 17 15 23 23 C 1.39921 * 119.99884 * 4.31546 * 13 11 10 24 24 C 1.38870 * 120.07258 * 291.20924 * 23 13 11 25 25 C 1.38108 * 119.93130 * 179.76655 * 24 23 13 26 26 C 1.38285 * 120.06787 * 0.49033 * 25 24 23 27 27 C 1.38276 * 120.14447 * 359.76707 * 26 25 24 28 28 C 1.38116 * 120.06741 * 359.97438 * 27 26 25 29 29 H 4.18857 * 15.02118 * 359.97438 * 4 2 1 30 30 H 1.09001 * 109.50257 * 296.72063 * 5 3 2 31 31 H 1.08998 * 109.50805 * 56.85128 * 5 3 2 32 32 H 1.09002 * 109.50305 * 178.60858 * 7 6 5 33 33 H 1.08996 * 109.50836 * 298.73663 * 7 6 5 34 34 H 1.08996 * 109.50878 * 183.21616 * 8 7 6 35 35 H 1.08995 * 109.51279 * 63.08296 * 8 7 6 36 36 H 1.09002 * 109.47255 * 63.27056 * 10 9 3 37 37 H 1.08994 * 109.47656 * 303.26777 * 10 9 3 38 38 H 1.09002 * 109.46988 * 209.99506 * 14 13 11 39 39 H 1.09001 * 109.47439 * 329.99776 * 14 13 11 40 40 H 0.97006 * 120.00406 * 179.97438 * 18 17 15 41 41 H 1.08008 * 120.03425 * 359.97438 * 24 23 13 42 42 H 1.07999 * 119.96983 * 180.25180 * 25 24 23 43 43 H 1.08003 * 119.92283 * 179.74516 * 26 25 24 44 44 H 1.07999 * 119.96894 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.03619 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0103 0.7901 0.6574 5 6 3.1580 -1.3543 0.4959 6 8 4.5860 -1.3745 0.4229 7 6 5.0985 -1.1512 -0.8936 8 6 4.6063 0.2059 -1.4035 9 7 3.1369 0.2340 -1.3659 10 6 2.6207 1.5008 -1.9015 11 6 3.0783 1.6668 -3.3278 12 8 3.6827 0.7712 -3.8789 13 7 2.8113 2.8083 -3.9927 14 6 3.1721 2.9337 -5.4070 15 6 2.0235 2.4636 -6.2620 16 1 1.1158 2.1066 -5.7982 17 6 2.1316 2.4891 -7.6363 18 7 3.2367 2.9242 -8.2010 19 14 0.7083 1.9057 -8.6961 20 1 -0.4117 1.4692 -7.8241 21 1 0.2518 3.0179 -9.5678 22 1 1.1529 0.7667 -9.5388 23 6 2.1895 3.8736 -3.3321 24 6 0.8649 3.7646 -2.9292 25 6 0.2555 4.8161 -2.2732 26 6 0.9597 5.9803 -2.0263 27 6 2.2771 6.0940 -2.4309 28 6 2.8939 5.0441 -3.0827 29 1 -1.0500 -0.0004 -0.0009 30 1 2.8441 -1.5061 1.5286 31 1 2.7503 -2.1485 -0.1296 32 1 6.1881 -1.1561 -0.8656 33 1 4.7473 -1.9394 -1.5594 34 1 4.9472 0.3552 -2.4279 35 1 5.0018 0.9986 -0.7685 36 1 2.9963 2.3292 -1.3008 37 1 1.5313 1.4925 -1.8682 38 1 3.3914 3.9768 -5.6349 39 1 4.0518 2.3240 -5.6130 40 1 3.3129 2.9418 -9.1679 41 1 0.3130 2.8573 -3.1258 42 1 -0.7733 4.7305 -1.9560 43 1 0.4796 6.8026 -1.5167 44 1 2.8243 7.0047 -2.2370 45 1 3.9227 5.1336 -3.3989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491731162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:07 Heat of formation + Delta-G solvation = 30.800472 kcal Electronic energy + Delta-G solvation = -28425.167711 eV Core-core repulsion = 24603.243027 eV Total energy + Delta-G solvation = -3821.924684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36639 -39.44811 -38.09207 -35.90637 -34.87124 -33.38670 -32.72333 -30.78543 -30.48325 -29.59161 -29.26188 -27.14744 -24.98290 -24.48826 -22.83189 -22.40778 -22.04580 -20.92329 -19.08963 -18.39614 -17.21491 -16.67499 -16.43109 -16.21746 -15.97815 -15.57548 -15.39851 -15.14804 -14.94982 -14.71588 -14.31581 -14.03544 -13.82264 -13.55970 -13.19691 -13.04300 -12.67522 -12.50590 -12.34964 -12.24388 -11.61865 -11.49155 -11.44778 -11.25955 -11.03206 -10.91261 -10.85409 -10.68316 -10.53146 -10.41305 -10.20391 -9.78481 -9.72789 -9.25409 -8.73936 -8.66900 -8.47827 -8.27272 -7.73417 -6.09303 -4.13762 1.51514 1.59636 2.56029 2.69984 3.19037 3.27870 3.35357 3.39407 3.52616 3.71383 3.96383 4.03173 4.27133 4.41815 4.73722 4.87558 4.97541 5.07760 5.12686 5.13324 5.20578 5.24123 5.26708 5.31300 5.41140 5.58882 5.59753 5.64484 5.66249 5.77230 5.79257 5.94658 5.98634 6.02699 6.21264 6.54615 6.68110 6.74955 6.75976 6.87105 6.96855 7.04347 7.15129 7.31601 7.43423 7.49628 7.86378 8.14571 8.28385 8.79910 8.94569 9.51058 10.99108 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009770 B = 0.004484 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.268533 B = 6243.026662 C = 7520.517555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.180 4.180 3 C 0.158 3.842 4 H 0.070 0.930 5 C 0.078 3.922 6 O -0.385 6.385 7 C 0.064 3.936 8 C 0.007 3.993 9 N -0.510 5.510 10 C 0.038 3.962 11 C 0.517 3.483 12 O -0.511 6.511 13 N -0.561 5.561 14 C 0.249 3.751 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.161 3.839 24 C -0.124 4.124 25 C -0.110 4.110 26 C -0.134 4.134 27 C -0.110 4.110 28 C -0.125 4.125 29 H 0.220 0.780 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 0.502 18.645 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C 0.051 3.949 4 H 0.087 0.913 5 C 0.000 4.000 6 O -0.303 6.303 7 C -0.012 4.012 8 C -0.120 4.120 9 N -0.236 5.236 10 C -0.093 4.093 11 C 0.304 3.696 12 O -0.386 6.386 13 N -0.290 5.290 14 C 0.131 3.869 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.069 3.931 24 C -0.143 4.143 25 C -0.128 4.128 26 C -0.152 4.152 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.237 0.763 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.936 -0.408 17.973 18.082 hybrid contribution -1.057 0.663 -0.620 1.393 sum -2.993 0.255 17.353 17.611 Atomic orbital electron populations 1.24907 0.95764 1.00137 0.99293 1.22435 0.93546 1.00958 1.01077 1.19251 0.85412 0.99575 0.90706 0.91279 1.22573 0.81244 0.94407 1.01738 1.87972 1.19916 1.92676 1.29755 1.22733 0.98960 0.96085 0.83464 1.23152 0.86450 0.97540 1.04840 1.61949 1.09493 1.33717 1.18398 1.22111 1.02141 0.90676 0.94334 1.20101 0.80102 0.81962 0.87403 1.90620 1.39892 1.39099 1.69017 1.45971 1.58185 1.11695 1.13182 1.19442 0.97366 0.97988 0.72102 1.21393 1.00731 1.43220 0.91070 0.92368 1.24900 0.96127 0.95120 0.97765 1.69934 1.25972 1.46660 1.10708 0.86430 0.82245 0.78442 0.80271 1.19772 1.20915 1.20784 1.17756 0.91431 0.89334 0.94562 1.21391 0.93655 0.99826 0.99469 1.20974 0.99596 0.93297 0.98963 1.21065 0.94828 0.97774 1.01540 1.20968 0.95114 0.98145 0.98615 1.21315 1.00316 0.93429 0.99394 0.76316 0.88138 0.91636 0.88141 0.91655 0.86181 0.94398 0.92483 0.87679 0.94722 0.93291 0.92696 0.85938 0.86125 0.86359 0.86068 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 19.25 29.55 0.57 -1.43 16 2 C -0.18 -2.27 11.19 -37.12 -0.42 -2.69 16 3 C 0.16 2.04 2.44 -70.39 -0.17 1.87 16 4 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 5 C 0.08 0.90 6.25 37.21 0.23 1.13 16 6 O -0.38 -4.94 10.83 -35.23 -0.38 -5.32 16 7 C 0.06 0.81 7.01 37.21 0.26 1.07 16 8 C 0.01 0.11 5.24 -3.71 -0.02 0.09 16 9 N -0.51 -7.94 4.34 -231.16 -1.00 -8.94 16 10 C 0.04 0.63 3.79 -4.97 -0.02 0.61 16 11 C 0.52 10.73 7.17 -10.99 -0.08 10.65 16 12 O -0.51 -12.29 13.63 5.55 0.08 -12.21 16 13 N -0.56 -12.00 2.50 -114.73 -0.29 -12.29 16 14 C 0.25 6.45 5.14 -5.19 -0.03 6.42 16 15 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 16 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 19 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.16 2.91 4.37 -83.70 -0.37 2.54 16 24 C -0.12 -1.99 8.50 -39.40 -0.33 -2.32 16 25 C -0.11 -1.44 10.04 -39.61 -0.40 -1.83 16 26 C -0.13 -1.62 10.04 -39.55 -0.40 -2.02 16 27 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 28 C -0.12 -1.98 9.71 -39.39 -0.38 -2.36 16 29 H 0.22 1.60 7.80 -54.09 -0.42 1.18 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.12 2.07 5.48 -51.93 -0.28 1.79 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 37 H 0.11 1.70 5.79 -51.93 -0.30 1.40 16 38 H 0.03 0.92 7.88 -51.93 -0.41 0.51 16 39 H 0.05 1.41 7.37 -51.93 -0.38 1.02 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.12 2.01 7.70 -52.48 -0.40 1.60 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -32.92 377.56 -8.94 -41.86 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.38 Total: 3.50 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.37 Total: -3.58 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.55 Total: -46.87 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.31 Total: -17.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.92 -8.94 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491731162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.663 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds