Wall clock time and date at job start Tue Mar 31 2020 15:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08997 * 109.53940 * 219.79320 * 3 2 1 5 5 C 1.53098 * 109.50822 * 339.90280 * 3 2 1 6 6 O 1.43009 * 109.25641 * 176.78733 * 5 3 2 7 7 C 1.43021 * 113.73819 * 301.32489 * 6 5 3 8 8 C 1.53096 * 109.25583 * 58.67698 * 7 6 5 9 9 N 1.47006 * 109.50617 * 99.68607 * 3 2 1 10 10 C 1.46901 * 111.00038 * 57.66940 * 9 3 2 11 11 C 1.50701 * 109.47292 * 183.26626 * 10 9 3 12 12 O 1.21289 * 119.99947 * 5.42613 * 11 10 9 13 13 N 1.34776 * 120.00128 * 185.15708 * 11 10 9 14 14 C 1.46500 * 119.99835 * 184.31591 * 13 11 10 15 15 C 1.50708 * 109.47122 * 89.99983 * 14 13 11 16 16 H 1.08005 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00148 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00003 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00264 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47065 * 119.99612 * 19 17 15 22 22 H 1.48497 * 109.47473 * 240.00239 * 19 17 15 23 23 C 1.39921 * 119.99884 * 4.31546 * 13 11 10 24 24 C 1.38870 * 120.07258 * 291.20924 * 23 13 11 25 25 C 1.38108 * 119.93130 * 179.76655 * 24 23 13 26 26 C 1.38285 * 120.06787 * 0.49033 * 25 24 23 27 27 C 1.38276 * 120.14447 * 359.76707 * 26 25 24 28 28 C 1.38116 * 120.06741 * 359.97438 * 27 26 25 29 29 H 4.18857 * 15.02118 * 359.97438 * 4 2 1 30 30 H 1.09001 * 109.50257 * 296.72063 * 5 3 2 31 31 H 1.08998 * 109.50805 * 56.85128 * 5 3 2 32 32 H 1.09002 * 109.50305 * 178.60858 * 7 6 5 33 33 H 1.08996 * 109.50836 * 298.73663 * 7 6 5 34 34 H 1.08996 * 109.50878 * 183.21616 * 8 7 6 35 35 H 1.08995 * 109.51279 * 63.08296 * 8 7 6 36 36 H 1.09002 * 109.47255 * 63.27056 * 10 9 3 37 37 H 1.08994 * 109.47656 * 303.26777 * 10 9 3 38 38 H 1.09002 * 109.46988 * 209.99506 * 14 13 11 39 39 H 1.09001 * 109.47439 * 329.99776 * 14 13 11 40 40 H 0.97006 * 120.00406 * 179.97438 * 18 17 15 41 41 H 1.08008 * 120.03425 * 359.97438 * 24 23 13 42 42 H 1.07999 * 119.96983 * 180.25180 * 25 24 23 43 43 H 1.08003 * 119.92283 * 179.74516 * 26 25 24 44 44 H 1.07999 * 119.96894 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.03619 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0103 0.7901 0.6574 5 6 3.1580 -1.3543 0.4959 6 8 4.5860 -1.3745 0.4229 7 6 5.0985 -1.1512 -0.8936 8 6 4.6063 0.2059 -1.4035 9 7 3.1369 0.2340 -1.3659 10 6 2.6207 1.5008 -1.9015 11 6 3.0783 1.6668 -3.3278 12 8 3.6827 0.7712 -3.8789 13 7 2.8113 2.8083 -3.9927 14 6 3.1721 2.9337 -5.4070 15 6 2.0235 2.4636 -6.2620 16 1 1.1158 2.1066 -5.7982 17 6 2.1316 2.4891 -7.6363 18 7 3.2367 2.9242 -8.2010 19 14 0.7083 1.9057 -8.6961 20 1 -0.4117 1.4692 -7.8241 21 1 0.2518 3.0179 -9.5678 22 1 1.1529 0.7667 -9.5388 23 6 2.1895 3.8736 -3.3321 24 6 0.8649 3.7646 -2.9292 25 6 0.2555 4.8161 -2.2732 26 6 0.9597 5.9803 -2.0263 27 6 2.2771 6.0940 -2.4309 28 6 2.8939 5.0441 -3.0827 29 1 -1.0500 -0.0004 -0.0009 30 1 2.8441 -1.5061 1.5286 31 1 2.7503 -2.1485 -0.1296 32 1 6.1881 -1.1561 -0.8656 33 1 4.7473 -1.9394 -1.5594 34 1 4.9472 0.3552 -2.4279 35 1 5.0018 0.9986 -0.7685 36 1 2.9963 2.3292 -1.3008 37 1 1.5313 1.4925 -1.8682 38 1 3.3914 3.9768 -5.6349 39 1 4.0518 2.3240 -5.6130 40 1 3.3129 2.9418 -9.1679 41 1 0.3130 2.8573 -3.1258 42 1 -0.7733 4.7305 -1.9560 43 1 0.4796 6.8026 -1.5167 44 1 2.8243 7.0047 -2.2370 45 1 3.9227 5.1336 -3.3989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491731162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:06 Heat of formation + Delta-G solvation = 9.648816 kcal Electronic energy + Delta-G solvation = -28426.084915 eV Core-core repulsion = 24603.243027 eV Total energy + Delta-G solvation = -3822.841889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74533 -40.60405 -39.43378 -37.07923 -36.44545 -34.82345 -34.39022 -31.93683 -31.45856 -31.11999 -30.49771 -28.89457 -26.43064 -25.49772 -24.60741 -23.64047 -23.34800 -22.00042 -20.53062 -19.34940 -18.78602 -18.52747 -17.74938 -17.33148 -17.10155 -17.04951 -16.78331 -16.30079 -16.25559 -16.01195 -15.85156 -15.22245 -15.13674 -14.84989 -14.47211 -14.35658 -14.30825 -13.78939 -13.60493 -13.53919 -13.40685 -13.06703 -12.75479 -12.69958 -12.54618 -12.41426 -12.15536 -12.13994 -11.96380 -11.73109 -11.50298 -11.35567 -11.01385 -10.70400 -10.62920 -10.08614 -9.85571 -9.51608 -9.28123 -8.27631 -6.42311 0.33717 0.47755 1.32747 1.34984 1.46382 1.58284 1.60388 1.81344 2.08943 2.35489 2.71979 2.83065 2.90162 3.02502 3.36754 3.45892 3.81419 3.92709 4.01073 4.01707 4.07441 4.09895 4.18813 4.23793 4.29190 4.37672 4.57704 4.63140 4.65704 4.69436 4.71856 4.81069 4.88817 4.97103 5.02304 5.08044 5.13248 5.39501 5.51318 5.60024 5.61244 5.64203 5.74496 5.78639 5.97591 6.03037 6.05484 6.62307 6.63060 6.68093 7.18879 7.33063 8.79988 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009770 B = 0.004484 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.268533 B = 6243.026662 C = 7520.517555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.224 4.224 3 C 0.161 3.839 4 H 0.077 0.923 5 C 0.078 3.922 6 O -0.388 6.388 7 C 0.071 3.929 8 C 0.010 3.990 9 N -0.530 5.530 10 C 0.062 3.938 11 C 0.509 3.491 12 O -0.557 6.557 13 N -0.563 5.563 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.268 1.268 22 H -0.278 1.278 23 C 0.121 3.879 24 C -0.136 4.136 25 C -0.102 4.102 26 C -0.119 4.119 27 C -0.103 4.103 28 C -0.141 4.141 29 H 0.252 0.748 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.020 0.980 39 H 0.007 0.993 40 H 0.268 0.732 41 H 0.111 0.889 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.153 0.847 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 1.782 20.908 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.224 4.224 3 C 0.054 3.946 4 H 0.094 0.906 5 C 0.001 3.999 6 O -0.306 6.306 7 C -0.006 4.006 8 C -0.117 4.117 9 N -0.256 5.256 10 C -0.069 4.069 11 C 0.298 3.702 12 O -0.436 6.436 13 N -0.291 5.291 14 C 0.148 3.852 15 C -0.579 4.579 16 H 0.068 0.932 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.204 1.204 23 C 0.031 3.969 24 C -0.155 4.155 25 C -0.120 4.120 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.161 4.161 29 H 0.269 0.731 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.038 0.962 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.172 0.828 43 H 0.178 0.822 44 H 0.171 0.829 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.714 0.899 20.281 20.841 hybrid contribution -0.236 0.352 -1.260 1.329 sum -4.949 1.251 19.021 19.694 Atomic orbital electron populations 1.25741 0.96538 0.98214 0.97138 1.22618 0.93978 1.02803 1.03025 1.19276 0.86081 1.00334 0.88915 0.90565 1.22722 0.80498 0.93520 1.03174 1.87968 1.20725 1.92530 1.29374 1.22706 1.00174 0.94385 0.83352 1.23043 0.86384 0.99173 1.03142 1.61921 1.09892 1.33145 1.20640 1.21845 1.02100 0.91804 0.91127 1.20945 0.79127 0.81089 0.89056 1.90590 1.41866 1.40664 1.70432 1.45781 1.58421 1.13275 1.11647 1.18829 0.95352 0.95810 0.75242 1.21611 1.00895 1.43526 0.91910 0.93153 1.25812 0.98893 0.95006 0.99071 1.70047 1.27876 1.47367 1.11274 0.85375 0.78853 0.78275 0.78390 1.19230 1.19328 1.20410 1.18037 0.92748 0.89266 0.96866 1.21398 0.92764 1.00753 1.00607 1.21355 1.00999 0.92349 0.97325 1.21571 0.94104 0.98271 0.99698 1.21343 0.95861 0.98012 0.96963 1.21397 1.00204 0.93864 1.00634 0.73130 0.85323 0.92387 0.85947 0.92723 0.89462 0.93472 0.91168 0.87181 0.96228 0.97466 0.92273 0.87050 0.82785 0.82166 0.82940 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 19.25 74.32 1.43 -1.63 16 2 C -0.22 -5.33 11.19 31.12 0.35 -4.98 16 3 C 0.16 4.03 2.44 43.12 0.11 4.13 16 4 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.08 1.73 6.25 72.01 0.45 2.18 16 6 O -0.39 -9.62 10.83 -148.98 -1.61 -11.23 16 7 C 0.07 1.81 7.01 72.01 0.50 2.32 16 8 C 0.01 0.31 5.24 86.31 0.45 0.76 16 9 N -0.53 -16.90 4.34 -885.24 -3.84 -20.74 16 10 C 0.06 2.09 3.79 85.56 0.32 2.41 16 11 C 0.51 22.57 7.17 87.66 0.63 23.20 16 12 O -0.56 -29.09 13.63 -3.06 -0.04 -29.13 16 13 N -0.56 -25.69 2.50 -635.29 -1.59 -27.28 16 14 C 0.27 14.94 5.14 85.64 0.44 15.38 16 15 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 16 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 17 C 0.01 0.67 5.46 84.65 0.46 1.13 16 18 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 19 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 C 0.12 4.50 4.37 38.15 0.17 4.66 16 24 C -0.14 -4.27 8.50 22.39 0.19 -4.08 16 25 C -0.10 -2.32 10.04 22.25 0.22 -2.10 16 26 C -0.12 -2.35 10.04 22.29 0.22 -2.13 16 27 C -0.10 -2.40 10.04 22.25 0.22 -2.18 16 28 C -0.14 -4.52 9.71 22.39 0.22 -4.30 16 29 H 0.25 2.74 7.80 -4.42 -0.03 2.70 16 30 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 3.30 5.48 -2.39 -0.01 3.28 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 2.16 7.88 -2.39 -0.02 2.14 16 37 H 0.11 3.59 5.79 -2.39 -0.01 3.57 16 38 H 0.02 1.13 7.88 -2.39 -0.02 1.11 16 39 H 0.01 0.46 7.37 -2.39 -0.02 0.44 16 40 H 0.27 15.28 8.31 -92.70 -0.77 14.50 16 41 H 0.11 3.67 7.70 -2.91 -0.02 3.65 16 42 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 43 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 44 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 45 H 0.11 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -76.45 377.56 2.84 -73.61 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.98 Total: 20.36 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.63 Total: 2.99 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -5.14 Total: -104.30 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.65 Total: -40.36 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -76.45 2.84 -73.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491731162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.258 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds