Wall clock time and date at job start Tue Mar 31 2020 15:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09001 * 109.50785 * 242.41926 * 3 2 1 5 5 C 1.53094 * 109.54360 * 122.30942 * 3 2 1 6 6 O 1.43020 * 109.25917 * 183.19658 * 5 3 2 7 7 C 1.43013 * 113.73971 * 58.66789 * 6 5 3 8 8 C 1.53095 * 109.25785 * 301.33084 * 7 6 5 9 9 N 1.47017 * 109.25970 * 56.85090 * 8 7 6 10 10 C 1.46897 * 111.00123 * 177.60794 * 9 8 7 11 11 C 1.50699 * 109.47225 * 304.28571 * 10 9 8 12 12 O 1.21290 * 120.00092 * 353.89597 * 11 10 9 13 13 N 1.34776 * 120.00517 * 173.89170 * 11 10 9 14 14 C 1.46503 * 120.00397 * 186.11761 * 13 11 10 15 15 C 1.50696 * 109.46759 * 90.00452 * 14 13 11 16 16 H 1.08000 * 120.00287 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99646 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00324 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00013 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46966 * 59.99389 * 19 17 15 21 21 H 1.48490 * 109.47171 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46659 * 299.99716 * 19 17 15 23 23 C 1.39922 * 119.99763 * 6.12453 * 13 11 10 24 24 C 1.38874 * 120.07049 * 277.40445 * 23 13 11 25 25 C 1.38113 * 119.92965 * 179.79120 * 24 23 13 26 26 C 1.38284 * 120.06898 * 0.48372 * 25 24 23 27 27 C 1.38281 * 120.14247 * 359.74459 * 26 25 24 28 28 C 1.38112 * 120.06936 * 0.02562 * 27 26 25 29 29 H 4.18802 * 15.02952 * 0.02562 * 4 2 1 30 30 H 1.09005 * 109.50648 * 303.12905 * 5 3 2 31 31 H 1.09003 * 109.50858 * 63.25832 * 5 3 2 32 32 H 1.08996 * 109.50552 * 181.39815 * 7 6 5 33 33 H 1.09004 * 109.50587 * 61.26178 * 7 6 5 34 34 H 1.08999 * 109.51194 * 296.91577 * 8 7 6 35 35 H 1.09000 * 109.54227 * 176.80258 * 8 7 6 36 36 H 1.09001 * 109.47369 * 64.28663 * 10 9 8 37 37 H 1.09001 * 109.47303 * 184.29026 * 10 9 8 38 38 H 1.09002 * 109.47295 * 210.00233 * 14 13 11 39 39 H 1.09002 * 109.47068 * 330.00446 * 14 13 11 40 40 H 0.96999 * 120.00353 * 179.97438 * 18 17 15 41 41 H 1.08006 * 120.03419 * 0.02562 * 24 23 13 42 42 H 1.07998 * 119.96106 * 180.22640 * 25 24 23 43 43 H 1.08002 * 119.92491 * 179.76737 * 26 25 24 44 44 H 1.07998 * 119.95902 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.03380 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0097 0.4765 0.9107 5 6 3.1577 0.7720 -1.2194 6 8 4.5860 0.7056 -1.2542 7 6 5.0990 -0.6280 -1.3140 8 6 4.6069 -1.4135 -0.0956 9 7 3.1375 -1.3836 -0.0605 10 6 2.6215 -2.1751 1.0643 11 6 3.1583 -3.5806 0.9776 12 8 3.8067 -3.9236 0.0116 13 7 2.9180 -4.4564 1.9733 14 6 3.5495 -5.7782 1.9547 15 6 4.8732 -5.7125 2.6719 16 1 5.2106 -4.7795 3.0986 17 6 5.6542 -6.8434 2.7825 18 7 5.2437 -7.9795 2.2625 19 14 7.2948 -6.7623 3.6722 20 1 7.0748 -6.3392 5.0785 21 1 7.9349 -8.1020 3.6532 22 1 8.1784 -5.7812 2.9925 23 6 2.0652 -4.1034 3.0249 24 6 2.5472 -3.3537 4.0900 25 6 1.7018 -3.0031 5.1243 26 6 0.3791 -3.4063 5.1051 27 6 -0.1027 -4.1569 4.0484 28 6 0.7364 -4.5067 3.0087 29 1 -1.0501 -0.0007 -0.0003 30 1 2.7505 0.3283 -2.1279 31 1 2.8434 1.8134 -1.1496 32 1 6.1886 -0.5991 -1.3127 33 1 4.7482 -1.1124 -2.2253 34 1 5.0019 -0.9602 0.8136 35 1 4.9483 -2.4463 -0.1654 36 1 2.9393 -1.7221 2.0034 37 1 1.5325 -2.1989 1.0225 38 1 2.9010 -6.4979 2.4542 39 1 3.7106 -6.0894 0.9225 40 1 5.7933 -8.7750 2.3400 41 1 3.5811 -3.0419 4.1075 42 1 2.0751 -2.4170 5.9510 43 1 -0.2790 -3.1341 5.9171 44 1 -1.1363 -4.4698 4.0363 45 1 0.3596 -5.0932 2.1839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491731173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:13 Heat of formation + Delta-G solvation = 32.484972 kcal Electronic energy + Delta-G solvation = -28470.874139 eV Core-core repulsion = 24649.022500 eV Total energy + Delta-G solvation = -3821.851639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.34117 -39.41401 -38.10215 -35.86765 -34.87308 -33.35242 -32.73440 -30.73529 -30.45073 -29.57890 -29.30101 -27.13103 -24.93858 -24.43961 -22.77922 -22.38124 -22.16435 -20.87205 -19.08332 -18.38481 -17.20916 -16.59720 -16.48878 -16.16462 -15.98390 -15.54476 -15.34213 -15.17336 -14.88797 -14.72974 -14.28802 -14.07864 -13.89705 -13.47919 -13.20756 -12.99637 -12.61609 -12.50966 -12.30680 -12.21099 -11.59297 -11.57669 -11.42521 -11.19896 -11.08244 -10.92303 -10.87133 -10.65701 -10.52821 -10.39637 -10.20566 -9.75743 -9.74963 -9.13829 -8.74898 -8.53811 -8.46545 -8.25831 -7.88023 -6.10623 -4.15919 1.50222 1.59432 2.55733 2.69255 3.18086 3.27766 3.32410 3.34791 3.54082 3.75167 3.95348 4.04072 4.28225 4.39320 4.77000 4.89714 5.00544 5.12106 5.13265 5.16079 5.23014 5.25357 5.30060 5.32896 5.46692 5.59871 5.62181 5.63613 5.72030 5.77291 5.78905 5.98710 6.00709 6.18121 6.21675 6.53909 6.67114 6.79185 6.81246 6.91207 6.97674 7.09529 7.16007 7.33015 7.43422 7.48458 7.84523 8.13379 8.30194 8.78657 8.93896 9.48880 10.97694 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009568 B = 0.004869 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.627498 B = 5749.276955 C = 7760.435336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.177 4.177 3 C 0.157 3.843 4 H 0.070 0.930 5 C 0.079 3.921 6 O -0.385 6.385 7 C 0.065 3.935 8 C 0.000 4.000 9 N -0.510 5.510 10 C 0.039 3.961 11 C 0.519 3.481 12 O -0.514 6.514 13 N -0.564 5.564 14 C 0.250 3.750 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.155 3.845 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.128 4.128 27 C -0.114 4.114 28 C -0.121 4.121 29 H 0.220 0.780 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.131 0.869 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.034 0.966 39 H 0.050 0.950 40 H 0.265 0.735 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 15.510 0.214 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.049 3.951 4 H 0.087 0.913 5 C 0.001 3.999 6 O -0.304 6.304 7 C -0.012 4.012 8 C -0.127 4.127 9 N -0.236 5.236 10 C -0.092 4.092 11 C 0.306 3.694 12 O -0.390 6.390 13 N -0.294 5.294 14 C 0.132 3.868 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.138 4.138 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.064 3.936 24 C -0.132 4.132 25 C -0.133 4.133 26 C -0.146 4.146 27 C -0.133 4.133 28 C -0.141 4.141 29 H 0.236 0.764 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.625 15.028 -0.803 17.864 hybrid contribution 0.769 -0.115 1.563 1.746 sum -8.856 14.913 0.761 17.361 Atomic orbital electron populations 1.24880 0.95740 0.99311 1.00552 1.22471 0.93561 1.01028 1.00648 1.19274 0.85330 0.90617 0.99914 0.91265 1.22554 0.81376 0.99981 0.95981 1.87976 1.19793 1.27811 1.94794 1.22741 0.99035 0.81688 0.97698 1.23313 0.86177 1.05446 0.97750 1.61997 1.09781 1.08572 1.43206 1.22053 1.01557 0.92792 0.92819 1.20081 0.80537 0.86209 0.82560 1.90578 1.39469 1.77987 1.30992 1.45902 1.45225 1.18163 1.20076 1.19415 0.92248 0.75874 0.99220 1.21306 1.03495 0.95792 1.36150 0.92564 1.24902 0.98191 0.95155 0.95565 1.69914 1.38240 1.00174 1.44745 0.86567 0.83618 0.77300 0.80020 1.20230 1.21075 1.20115 1.17715 0.89424 0.96695 0.89797 1.21489 0.99903 0.98506 0.93274 1.21015 0.93723 1.00389 0.98204 1.21089 0.95773 0.99242 0.98511 1.20968 0.99451 0.98770 0.94061 1.21411 0.92921 1.00339 0.99380 0.76355 0.91743 0.88218 0.88112 0.91795 0.94392 0.85124 0.92220 0.88097 0.94849 0.93186 0.92545 0.85790 0.86126 0.86334 0.86064 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 19.25 29.55 0.57 -1.40 16 2 C -0.18 -2.20 11.25 -37.12 -0.42 -2.62 16 3 C 0.16 2.05 2.44 -70.39 -0.17 1.87 16 4 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.08 0.93 6.25 37.21 0.23 1.16 16 6 O -0.39 -5.17 10.83 -35.23 -0.38 -5.55 16 7 C 0.06 0.88 7.01 37.21 0.26 1.14 16 8 C 0.00 0.00 5.20 -3.71 -0.02 -0.02 16 9 N -0.51 -8.03 4.40 -231.15 -1.02 -9.04 16 10 C 0.04 0.64 4.05 -4.98 -0.02 0.62 16 11 C 0.52 10.71 7.21 -10.99 -0.08 10.64 16 12 O -0.51 -12.27 13.34 5.55 0.07 -12.20 16 13 N -0.56 -11.98 2.48 -114.74 -0.28 -12.26 16 14 C 0.25 6.46 5.20 -5.19 -0.03 6.43 16 15 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.15 2.78 4.08 -83.69 -0.34 2.44 16 24 C -0.11 -1.83 9.13 -39.39 -0.36 -2.19 16 25 C -0.11 -1.52 10.04 -39.61 -0.40 -1.92 16 26 C -0.13 -1.54 10.04 -39.55 -0.40 -1.94 16 27 C -0.11 -1.45 10.04 -39.61 -0.40 -1.85 16 28 C -0.12 -1.89 9.97 -39.39 -0.39 -2.28 16 29 H 0.22 1.49 7.80 -54.09 -0.42 1.07 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.13 2.49 5.16 -51.93 -0.27 2.22 16 36 H 0.06 0.94 7.29 -51.93 -0.38 0.56 16 37 H 0.10 1.60 7.06 -51.93 -0.37 1.23 16 38 H 0.03 0.90 8.05 -51.93 -0.42 0.48 16 39 H 0.05 1.44 7.35 -51.93 -0.38 1.06 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 41 H 0.12 2.09 8.06 -52.48 -0.42 1.66 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 45 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -32.12 379.17 -8.99 -41.11 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.43 Total: 4.31 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.38 Total: -3.15 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.57 Total: -46.71 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.31 Total: -17.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.12 -8.99 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491731173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.597 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds