Wall clock time and date at job start Tue Mar 31 2020 15:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09001 * 109.50785 * 242.41926 * 3 2 1 5 5 C 1.53094 * 109.54360 * 122.30942 * 3 2 1 6 6 O 1.43020 * 109.25917 * 183.19658 * 5 3 2 7 7 C 1.43013 * 113.73971 * 58.66789 * 6 5 3 8 8 C 1.53095 * 109.25785 * 301.33084 * 7 6 5 9 9 N 1.47017 * 109.25970 * 56.85090 * 8 7 6 10 10 C 1.46897 * 111.00123 * 177.60794 * 9 8 7 11 11 C 1.50699 * 109.47225 * 304.28571 * 10 9 8 12 12 O 1.21290 * 120.00092 * 353.89597 * 11 10 9 13 13 N 1.34776 * 120.00517 * 173.89170 * 11 10 9 14 14 C 1.46503 * 120.00397 * 186.11761 * 13 11 10 15 15 C 1.50696 * 109.46759 * 90.00452 * 14 13 11 16 16 H 1.08000 * 120.00287 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99646 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00324 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00013 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46966 * 59.99389 * 19 17 15 21 21 H 1.48490 * 109.47171 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46659 * 299.99716 * 19 17 15 23 23 C 1.39922 * 119.99763 * 6.12453 * 13 11 10 24 24 C 1.38874 * 120.07049 * 277.40445 * 23 13 11 25 25 C 1.38113 * 119.92965 * 179.79120 * 24 23 13 26 26 C 1.38284 * 120.06898 * 0.48372 * 25 24 23 27 27 C 1.38281 * 120.14247 * 359.74459 * 26 25 24 28 28 C 1.38112 * 120.06936 * 0.02562 * 27 26 25 29 29 H 4.18802 * 15.02952 * 0.02562 * 4 2 1 30 30 H 1.09005 * 109.50648 * 303.12905 * 5 3 2 31 31 H 1.09003 * 109.50858 * 63.25832 * 5 3 2 32 32 H 1.08996 * 109.50552 * 181.39815 * 7 6 5 33 33 H 1.09004 * 109.50587 * 61.26178 * 7 6 5 34 34 H 1.08999 * 109.51194 * 296.91577 * 8 7 6 35 35 H 1.09000 * 109.54227 * 176.80258 * 8 7 6 36 36 H 1.09001 * 109.47369 * 64.28663 * 10 9 8 37 37 H 1.09001 * 109.47303 * 184.29026 * 10 9 8 38 38 H 1.09002 * 109.47295 * 210.00233 * 14 13 11 39 39 H 1.09002 * 109.47068 * 330.00446 * 14 13 11 40 40 H 0.96999 * 120.00353 * 179.97438 * 18 17 15 41 41 H 1.08006 * 120.03419 * 0.02562 * 24 23 13 42 42 H 1.07998 * 119.96106 * 180.22640 * 25 24 23 43 43 H 1.08002 * 119.92491 * 179.76737 * 26 25 24 44 44 H 1.07998 * 119.95902 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.03380 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0097 0.4765 0.9107 5 6 3.1577 0.7720 -1.2194 6 8 4.5860 0.7056 -1.2542 7 6 5.0990 -0.6280 -1.3140 8 6 4.6069 -1.4135 -0.0956 9 7 3.1375 -1.3836 -0.0605 10 6 2.6215 -2.1751 1.0643 11 6 3.1583 -3.5806 0.9776 12 8 3.8067 -3.9236 0.0116 13 7 2.9180 -4.4564 1.9733 14 6 3.5495 -5.7782 1.9547 15 6 4.8732 -5.7125 2.6719 16 1 5.2106 -4.7795 3.0986 17 6 5.6542 -6.8434 2.7825 18 7 5.2437 -7.9795 2.2625 19 14 7.2948 -6.7623 3.6722 20 1 7.0748 -6.3392 5.0785 21 1 7.9349 -8.1020 3.6532 22 1 8.1784 -5.7812 2.9925 23 6 2.0652 -4.1034 3.0249 24 6 2.5472 -3.3537 4.0900 25 6 1.7018 -3.0031 5.1243 26 6 0.3791 -3.4063 5.1051 27 6 -0.1027 -4.1569 4.0484 28 6 0.7364 -4.5067 3.0087 29 1 -1.0501 -0.0007 -0.0003 30 1 2.7505 0.3283 -2.1279 31 1 2.8434 1.8134 -1.1496 32 1 6.1886 -0.5991 -1.3127 33 1 4.7482 -1.1124 -2.2253 34 1 5.0019 -0.9602 0.8136 35 1 4.9483 -2.4463 -0.1654 36 1 2.9393 -1.7221 2.0034 37 1 1.5325 -2.1989 1.0225 38 1 2.9010 -6.4979 2.4542 39 1 3.7106 -6.0894 0.9225 40 1 5.7933 -8.7750 2.3400 41 1 3.5811 -3.0419 4.1075 42 1 2.0751 -2.4170 5.9510 43 1 -0.2790 -3.1341 5.9171 44 1 -1.1363 -4.4698 4.0363 45 1 0.3596 -5.0932 2.1839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491731173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:11 Heat of formation + Delta-G solvation = 12.061014 kcal Electronic energy + Delta-G solvation = -28471.759789 eV Core-core repulsion = 24649.022500 eV Total energy + Delta-G solvation = -3822.737288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73850 -40.59485 -39.44422 -37.07166 -36.44273 -34.81103 -34.37370 -31.85637 -31.46065 -31.13764 -30.54939 -28.87570 -26.40030 -25.49077 -24.56100 -23.62159 -23.44238 -21.99806 -20.52292 -19.34097 -18.77826 -18.51613 -17.76083 -17.26837 -17.14042 -17.00823 -16.81139 -16.29882 -16.26570 -15.99505 -15.84586 -15.31758 -15.15168 -14.81084 -14.44231 -14.31243 -14.30077 -13.75419 -13.62951 -13.55181 -13.40312 -13.11380 -12.71216 -12.65098 -12.52921 -12.47162 -12.20284 -12.11848 -11.95723 -11.73250 -11.50799 -11.35275 -10.98438 -10.68724 -10.53014 -9.86830 -9.83371 -9.65366 -9.40484 -8.26839 -6.41708 0.33500 0.47724 1.33689 1.37585 1.44503 1.53273 1.64590 1.82162 2.09379 2.36021 2.72388 2.82438 2.89136 3.03546 3.37197 3.46586 3.81965 3.94236 4.01272 4.03930 4.08606 4.10426 4.17754 4.24689 4.29180 4.36084 4.57405 4.65401 4.65637 4.69302 4.72360 4.83549 4.90468 4.98326 5.02661 5.10403 5.13025 5.41926 5.52377 5.59374 5.61169 5.65281 5.73649 5.77820 5.98297 6.02966 6.05616 6.63027 6.63745 6.68828 7.19572 7.33880 8.80940 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009568 B = 0.004869 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.627498 B = 5749.276955 C = 7760.435336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.224 4.224 3 C 0.160 3.840 4 H 0.072 0.928 5 C 0.078 3.922 6 O -0.389 6.389 7 C 0.072 3.928 8 C 0.004 3.996 9 N -0.524 5.524 10 C 0.062 3.938 11 C 0.510 3.490 12 O -0.558 6.558 13 N -0.565 5.565 14 C 0.269 3.731 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.927 5.927 19 Si 0.966 3.034 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.274 1.274 23 C 0.116 3.884 24 C -0.129 4.129 25 C -0.109 4.109 26 C -0.113 4.113 27 C -0.104 4.104 28 C -0.135 4.135 29 H 0.255 0.745 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.015 0.985 39 H 0.007 0.993 40 H 0.268 0.732 41 H 0.107 0.893 42 H 0.150 0.850 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 17.866 2.453 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.225 4.225 3 C 0.052 3.948 4 H 0.090 0.910 5 C 0.001 3.999 6 O -0.308 6.308 7 C -0.004 4.004 8 C -0.124 4.124 9 N -0.250 5.250 10 C -0.068 4.068 11 C 0.299 3.701 12 O -0.437 6.437 13 N -0.293 5.293 14 C 0.149 3.851 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.790 3.210 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.199 1.199 23 C 0.026 3.974 24 C -0.148 4.148 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.122 4.122 28 C -0.154 4.154 29 H 0.271 0.729 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.033 0.967 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.168 0.832 43 H 0.179 0.821 44 H 0.174 0.826 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.497 17.420 1.459 20.923 hybrid contribution 1.170 -0.833 0.894 1.692 sum -10.327 16.587 2.354 19.681 Atomic orbital electron populations 1.25743 0.96479 0.96798 0.98305 1.22554 0.93849 1.03294 1.02781 1.19273 0.86303 0.88648 1.00554 0.91045 1.22734 0.80405 1.01433 0.95328 1.87968 1.20883 1.27234 1.94698 1.22681 0.99996 0.81593 0.96165 1.23150 0.86659 1.03578 0.99000 1.61984 1.09589 1.10556 1.42898 1.21799 1.01611 0.89860 0.93578 1.20894 0.79806 0.87705 0.81653 1.90556 1.41384 1.79070 1.32686 1.45715 1.45551 1.16554 1.21528 1.18800 0.92005 0.78279 0.95996 1.21543 1.04348 0.95814 1.36250 0.92874 1.25822 1.02013 0.94656 0.96244 1.70041 1.39795 1.00890 1.45858 0.85488 0.78719 0.77571 0.79206 1.18744 1.20212 1.19885 1.17982 0.90016 0.99464 0.89894 1.21463 0.99878 0.99385 0.94106 1.21360 0.93967 0.99787 0.97605 1.21587 0.95561 0.97074 0.98817 1.21360 1.00508 0.97598 0.92783 1.21487 0.92474 1.00828 1.00606 0.72926 0.92034 0.85373 0.86414 0.92301 0.94352 0.88825 0.91422 0.87146 0.96660 0.97511 0.92291 0.87451 0.83191 0.82103 0.82630 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 19.25 74.32 1.43 -1.39 16 2 C -0.22 -5.21 11.25 31.13 0.35 -4.86 16 3 C 0.16 4.06 2.44 43.12 0.11 4.17 16 4 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 5 C 0.08 1.75 6.25 72.01 0.45 2.20 16 6 O -0.39 -10.15 10.83 -148.98 -1.61 -11.77 16 7 C 0.07 1.99 7.01 72.01 0.50 2.49 16 8 C 0.00 0.12 5.20 86.31 0.45 0.57 16 9 N -0.52 -16.96 4.40 -885.23 -3.90 -20.86 16 10 C 0.06 2.11 4.05 85.56 0.35 2.46 16 11 C 0.51 22.58 7.21 87.66 0.63 23.21 16 12 O -0.56 -28.97 13.34 -3.06 -0.04 -29.01 16 13 N -0.56 -25.65 2.48 -635.30 -1.58 -27.23 16 14 C 0.27 14.99 5.20 85.63 0.45 15.43 16 15 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 16 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 17 C 0.01 0.70 5.46 84.66 0.46 1.16 16 18 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 19 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.12 4.29 4.08 38.15 0.16 4.45 16 24 C -0.13 -4.18 9.13 22.39 0.20 -3.98 16 25 C -0.11 -2.56 10.04 22.25 0.22 -2.34 16 26 C -0.11 -2.21 10.04 22.29 0.22 -1.99 16 27 C -0.10 -2.32 10.04 22.25 0.22 -2.10 16 28 C -0.13 -4.16 9.97 22.39 0.22 -3.94 16 29 H 0.25 2.36 7.80 -4.41 -0.03 2.32 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 3.88 5.16 -2.39 -0.01 3.87 16 36 H 0.07 2.18 7.29 -2.39 -0.02 2.16 16 37 H 0.11 3.52 7.06 -2.39 -0.02 3.50 16 38 H 0.02 0.89 8.05 -2.39 -0.02 0.87 16 39 H 0.01 0.43 7.35 -2.39 -0.02 0.41 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.11 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.12 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -75.18 379.17 2.83 -72.35 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.98 Total: 21.33 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 6.67 Total: 4.34 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -5.19 Total: -104.19 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.65 Total: -40.77 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -75.18 2.83 -72.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491731173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.413 kcal (2) G-P(sol) polarization free energy of solvation -75.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds