Wall clock time and date at job start Tue Mar 31 2020 16:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 N 1.46501 * 109.47043 * 119.99678 * 2 1 3 5 5 C 1.46498 * 120.00042 * 300.00280 * 4 2 1 6 6 C 1.50698 * 109.47066 * 274.99607 * 5 4 2 7 7 H 1.08002 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99735 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99512 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00333 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46978 * 90.00008 * 10 8 6 12 12 H 1.48501 * 109.47281 * 210.00153 * 10 8 6 13 13 H 1.48504 * 109.46825 * 330.00029 * 10 8 6 14 14 S 1.65601 * 119.99709 * 120.00170 * 4 2 1 15 15 O 1.42096 * 104.27550 * 153.93243 * 14 4 2 16 16 O 1.42097 * 104.27967 * 26.07087 * 14 4 2 17 17 C 1.81409 * 104.44942 * 270.00128 * 14 4 2 18 18 C 1.52999 * 109.46814 * 180.02562 * 17 14 4 19 19 C 1.47202 * 109.46993 * 299.99496 * 18 17 14 20 20 N 5.45840 * 116.29487 * 195.97546 * 2 1 3 21 21 C 1.53006 * 109.46623 * 179.97438 * 18 17 14 22 22 C 1.52999 * 109.46626 * 179.97438 * 21 18 17 23 23 C 1.52997 * 109.46991 * 60.00378 * 22 21 18 24 24 C 1.52996 * 109.47131 * 299.99311 * 23 22 21 25 25 C 1.52997 * 109.47317 * 60.00042 * 18 17 14 26 26 H 1.08997 * 109.47209 * 299.99944 * 1 2 3 27 27 H 1.09003 * 109.46683 * 60.00016 * 1 2 3 28 28 H 1.08998 * 109.46715 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47209 * 240.00056 * 2 1 3 30 30 H 1.09000 * 109.46931 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47492 * 299.99489 * 3 2 1 32 32 H 1.08997 * 109.47196 * 60.00048 * 3 2 1 33 33 H 1.08995 * 109.47048 * 35.00313 * 5 4 2 34 34 H 1.09000 * 109.46693 * 155.00045 * 5 4 2 35 35 H 0.97001 * 119.99481 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47067 * 60.00006 * 17 14 4 37 37 H 1.09001 * 109.46593 * 300.00012 * 17 14 4 38 38 H 1.08993 * 109.46955 * 300.00075 * 21 18 17 39 39 H 1.09000 * 109.47050 * 59.99904 * 21 18 17 40 40 H 1.09002 * 109.46719 * 180.02562 * 22 21 18 41 41 H 1.08993 * 109.47839 * 299.99931 * 22 21 18 42 42 H 1.09001 * 109.47289 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47611 * 59.99933 * 23 22 21 44 44 H 1.08996 * 109.47452 * 300.00000 * 24 23 22 45 45 H 1.09000 * 109.47054 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.47153 * 299.99641 * 25 18 17 47 47 H 1.08996 * 109.46952 * 59.99813 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.6338 0.8906 2.9312 7 1 3.4334 1.1763 2.2637 8 6 2.5000 1.5145 4.1534 9 7 3.3457 2.4580 4.5061 10 14 1.1176 1.0200 5.3083 11 1 1.5830 -0.0747 6.1972 12 1 0.7175 2.1897 6.1311 13 1 -0.0469 0.5517 4.5144 14 16 2.9705 -2.0370 1.0443 15 8 3.7316 -2.0651 2.2439 16 8 3.6006 -1.8798 -0.2196 17 6 1.7964 -3.4192 1.0027 18 6 2.5634 -4.7357 0.8635 19 6 3.3454 -4.7185 -0.3835 20 7 3.9481 -4.7046 -1.3468 21 6 1.5732 -5.9016 0.8291 22 6 2.3401 -7.2181 0.6893 23 6 3.2852 -7.3867 1.8806 24 6 4.2754 -6.2209 1.9150 25 6 3.5077 -4.9044 2.0554 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.6540 0.2180 2.5045 34 1 1.7105 -1.0073 3.2464 35 1 3.2518 2.8967 5.3661 36 1 1.1234 -3.2989 0.1538 37 1 1.2177 -3.4322 1.9263 38 1 0.9945 -5.9141 1.7526 39 1 0.9001 -5.7817 -0.0198 40 1 1.6347 -8.0486 0.6643 41 1 2.9186 -7.2054 -0.2344 42 1 3.8314 -8.3248 1.7812 43 1 2.7068 -7.3996 2.8044 44 1 4.8539 -6.2081 0.9913 45 1 4.9490 -6.3412 2.7634 46 1 4.2132 -4.0738 2.0804 47 1 2.9287 -4.9171 2.9788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547792193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:29 Heat of formation + Delta-G solvation = -57.048390 kcal Electronic energy + Delta-G solvation = -28151.153338 eV Core-core repulsion = 24460.863192 eV Total energy + Delta-G solvation = -3690.290146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.94750 -37.09444 -36.67865 -35.83162 -35.41655 -33.29576 -32.68227 -31.18782 -30.88840 -27.65659 -27.10580 -26.62228 -23.22938 -23.08375 -22.44366 -21.01106 -20.38787 -18.18220 -17.44619 -17.07949 -16.77367 -16.05429 -15.72770 -15.31599 -14.90560 -14.68817 -14.43596 -14.03578 -13.75045 -13.69497 -13.45529 -13.30866 -13.04134 -12.80513 -12.64751 -12.42775 -12.26704 -12.17539 -12.05722 -11.99419 -11.85163 -11.64454 -11.49908 -11.43794 -11.34082 -11.11995 -11.02619 -10.89997 -10.85917 -10.77233 -10.51602 -10.46627 -10.20933 -10.17484 -9.91105 -9.40350 -8.57284 -8.14097 -6.05970 -4.03608 0.59926 2.62491 2.65197 3.12553 3.25951 3.29444 3.34407 3.53985 4.06574 4.26156 4.35482 4.38170 4.44697 4.50837 4.74832 4.88103 4.89005 5.07637 5.13132 5.18273 5.21259 5.28137 5.33527 5.42995 5.50615 5.55326 5.61703 5.66661 5.73813 5.82184 5.82549 5.84127 5.96661 6.02654 6.10367 6.12458 6.19056 6.35079 6.46579 6.68204 6.76671 7.03433 7.22188 7.39083 7.45058 7.58952 8.51716 9.01802 9.52716 11.07401 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.004684 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.974667 B = 5976.133992 C = 6746.407728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 C -0.152 4.152 4 N -0.973 5.973 5 C 0.223 3.777 6 C -0.521 4.521 7 H 0.082 0.918 8 C 0.072 3.928 9 N -0.895 5.895 10 Si 0.866 3.134 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 S 2.594 3.406 15 O -0.925 6.925 16 O -0.958 6.958 17 C -0.646 4.646 18 C 0.063 3.937 19 C 0.183 3.817 20 N -0.389 5.389 21 C -0.099 4.099 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.143 4.143 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 -17.040 -5.454 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 C -0.210 4.210 4 N -0.811 5.811 5 C 0.100 3.900 6 C -0.560 4.560 7 H 0.100 0.900 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.693 3.307 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 S 2.685 3.315 15 O -0.915 6.915 16 O -0.948 6.948 17 C -0.772 4.772 18 C 0.059 3.941 19 C -0.136 4.136 20 N -0.063 5.063 21 C -0.138 4.138 22 C -0.164 4.164 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.181 4.181 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.168 0.832 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.349 -16.909 -6.820 19.307 hybrid contribution -1.652 -0.291 1.114 2.013 sum -8.001 -17.200 -5.706 19.810 Atomic orbital electron populations 1.22216 0.96010 1.01385 1.02651 1.20730 0.93474 0.95281 0.86510 1.22103 1.01904 0.94874 1.02153 1.57346 1.70351 1.40399 1.13050 1.19473 0.97386 0.95601 0.77537 1.21378 1.13718 1.17847 1.03067 0.89986 1.24861 0.95850 0.94844 0.97435 1.69894 1.36532 1.25033 1.21906 0.87018 0.83112 0.78692 0.81878 1.19866 1.21082 1.18985 1.05571 0.75998 0.75131 0.74779 1.93638 1.65862 1.85394 1.46594 1.93583 1.72472 1.84867 1.43843 1.31115 1.18636 1.14874 1.12571 1.17867 0.93638 0.95524 0.87117 1.28936 0.94729 0.95100 0.94850 1.81187 1.08136 1.06185 1.10798 1.21626 0.96291 0.91864 1.04028 1.21635 0.98732 0.96983 0.99066 1.21579 0.97474 0.98220 0.98590 1.21583 0.98027 0.93594 1.02808 1.22222 0.98956 1.00482 0.96480 0.91304 0.92034 0.93234 0.89825 0.92383 0.93517 0.89649 0.94543 0.95383 0.92622 0.84592 0.83164 0.89184 0.90678 0.90975 0.91980 0.91635 0.91164 0.91952 0.90411 0.88949 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.16 37.16 0.34 -1.84 16 2 C 0.15 2.45 3.19 -67.93 -0.22 2.23 16 3 C -0.15 -2.76 8.21 37.16 0.30 -2.45 16 4 N -0.97 -18.41 2.66 -108.57 -0.29 -18.70 16 5 C 0.22 4.84 3.65 -5.20 -0.02 4.82 16 6 C -0.52 -14.00 8.08 -34.44 -0.28 -14.28 16 7 H 0.08 2.46 7.32 -52.49 -0.38 2.07 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 10 Si 0.87 20.05 27.47 -169.99 -4.67 15.38 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.27 -5.59 6.54 56.52 0.37 -5.22 16 14 S 2.59 47.16 4.55 -107.50 -0.49 46.67 16 15 O -0.92 -19.84 14.60 -57.54 -0.84 -20.68 16 16 O -0.96 -19.66 15.27 -57.54 -0.88 -20.54 16 17 C -0.65 -7.67 5.15 37.16 0.19 -7.48 16 18 C 0.06 0.73 0.50 -157.29 -0.08 0.66 16 19 C 0.18 2.68 9.54 -20.74 -0.20 2.48 16 20 N -0.39 -6.62 18.54 42.17 0.78 -5.84 16 21 C -0.10 -0.80 4.71 -26.73 -0.13 -0.93 16 22 C -0.13 -0.99 5.70 -26.73 -0.15 -1.14 16 23 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 24 C -0.12 -1.22 5.70 -26.71 -0.15 -1.37 16 25 C -0.14 -1.68 4.23 -26.71 -0.11 -1.79 16 26 H 0.07 0.98 6.69 -51.93 -0.35 0.64 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.33 6.87 -51.93 -0.36 0.97 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.73 6.65 -51.93 -0.35 1.39 16 33 H 0.04 0.75 5.51 -51.93 -0.29 0.46 16 34 H 0.03 0.59 7.03 -51.93 -0.37 0.23 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.14 1.29 8.14 -51.92 -0.42 0.87 16 37 H 0.15 1.37 8.14 -51.92 -0.42 0.95 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.57 7.23 -51.93 -0.38 0.20 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.69 7.22 -51.93 -0.38 0.31 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.34 5.46 -51.93 -0.28 1.06 16 47 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -34.35 370.95 -8.54 -42.89 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.77 Total: 1.46 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -0.75 Total: -20.27 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 1.27 Total: -50.52 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.72 Total: -41.21 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Atomic # 16 Polarization: 47.16 SS G_CDS: -0.49 Total: 46.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.35 -8.54 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547792193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.159 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds