Wall clock time and date at job start Tue Mar 31 2020 16:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 N 1.46501 * 109.47043 * 119.99678 * 2 1 3 5 5 C 1.46498 * 120.00042 * 300.00280 * 4 2 1 6 6 C 1.50698 * 109.47066 * 274.99607 * 5 4 2 7 7 H 1.08002 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99735 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99512 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00333 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46978 * 90.00008 * 10 8 6 12 12 H 1.48501 * 109.47281 * 210.00153 * 10 8 6 13 13 H 1.48504 * 109.46825 * 330.00029 * 10 8 6 14 14 S 1.65601 * 119.99709 * 120.00170 * 4 2 1 15 15 O 1.42096 * 104.27550 * 153.93243 * 14 4 2 16 16 O 1.42097 * 104.27967 * 26.07087 * 14 4 2 17 17 C 1.81409 * 104.44942 * 270.00128 * 14 4 2 18 18 C 1.52999 * 109.46814 * 180.02562 * 17 14 4 19 19 C 1.47202 * 109.46993 * 299.99496 * 18 17 14 20 20 N 5.45840 * 116.29487 * 195.97546 * 2 1 3 21 21 C 1.53006 * 109.46623 * 179.97438 * 18 17 14 22 22 C 1.52999 * 109.46626 * 179.97438 * 21 18 17 23 23 C 1.52997 * 109.46991 * 60.00378 * 22 21 18 24 24 C 1.52996 * 109.47131 * 299.99311 * 23 22 21 25 25 C 1.52997 * 109.47317 * 60.00042 * 18 17 14 26 26 H 1.08997 * 109.47209 * 299.99944 * 1 2 3 27 27 H 1.09003 * 109.46683 * 60.00016 * 1 2 3 28 28 H 1.08998 * 109.46715 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47209 * 240.00056 * 2 1 3 30 30 H 1.09000 * 109.46931 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47492 * 299.99489 * 3 2 1 32 32 H 1.08997 * 109.47196 * 60.00048 * 3 2 1 33 33 H 1.08995 * 109.47048 * 35.00313 * 5 4 2 34 34 H 1.09000 * 109.46693 * 155.00045 * 5 4 2 35 35 H 0.97001 * 119.99481 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47067 * 60.00006 * 17 14 4 37 37 H 1.09001 * 109.46593 * 300.00012 * 17 14 4 38 38 H 1.08993 * 109.46955 * 300.00075 * 21 18 17 39 39 H 1.09000 * 109.47050 * 59.99904 * 21 18 17 40 40 H 1.09002 * 109.46719 * 180.02562 * 22 21 18 41 41 H 1.08993 * 109.47839 * 299.99931 * 22 21 18 42 42 H 1.09001 * 109.47289 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47611 * 59.99933 * 23 22 21 44 44 H 1.08996 * 109.47452 * 300.00000 * 24 23 22 45 45 H 1.09000 * 109.47054 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.47153 * 299.99641 * 25 18 17 47 47 H 1.08996 * 109.46952 * 59.99813 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.6338 0.8906 2.9312 7 1 3.4334 1.1763 2.2637 8 6 2.5000 1.5145 4.1534 9 7 3.3457 2.4580 4.5061 10 14 1.1176 1.0200 5.3083 11 1 1.5830 -0.0747 6.1972 12 1 0.7175 2.1897 6.1311 13 1 -0.0469 0.5517 4.5144 14 16 2.9705 -2.0370 1.0443 15 8 3.7316 -2.0651 2.2439 16 8 3.6006 -1.8798 -0.2196 17 6 1.7964 -3.4192 1.0027 18 6 2.5634 -4.7357 0.8635 19 6 3.3454 -4.7185 -0.3835 20 7 3.9481 -4.7046 -1.3468 21 6 1.5732 -5.9016 0.8291 22 6 2.3401 -7.2181 0.6893 23 6 3.2852 -7.3867 1.8806 24 6 4.2754 -6.2209 1.9150 25 6 3.5077 -4.9044 2.0554 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.6540 0.2180 2.5045 34 1 1.7105 -1.0073 3.2464 35 1 3.2518 2.8967 5.3661 36 1 1.1234 -3.2989 0.1538 37 1 1.2177 -3.4322 1.9263 38 1 0.9945 -5.9141 1.7526 39 1 0.9001 -5.7817 -0.0198 40 1 1.6347 -8.0486 0.6643 41 1 2.9186 -7.2054 -0.2344 42 1 3.8314 -8.3248 1.7812 43 1 2.7068 -7.3996 2.8044 44 1 4.8539 -6.2081 0.9913 45 1 4.9490 -6.3412 2.7634 46 1 4.2132 -4.0738 2.0804 47 1 2.9287 -4.9171 2.9788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547792193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:27 Heat of formation + Delta-G solvation = -81.729086 kcal Electronic energy + Delta-G solvation = -28152.223573 eV Core-core repulsion = 24460.863192 eV Total energy + Delta-G solvation = -3691.360381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.79158 -38.51931 -38.17591 -36.95327 -36.88837 -34.66509 -34.14485 -32.46577 -31.84128 -29.37008 -28.11978 -27.83050 -24.30913 -24.14424 -23.77097 -21.89706 -21.59987 -19.60387 -18.96891 -18.77330 -17.99350 -17.26258 -17.00313 -16.37275 -16.21832 -15.73682 -15.57917 -15.42221 -14.96176 -14.79645 -14.60689 -14.42560 -14.35423 -14.16157 -13.78570 -13.64903 -13.55833 -13.30208 -13.22326 -13.02983 -13.00569 -12.98077 -12.78122 -12.68025 -12.67448 -12.51581 -12.32425 -12.13064 -12.07548 -11.91372 -11.80351 -11.56806 -11.45938 -11.37333 -11.15546 -10.90402 -10.66121 -9.67277 -8.16891 -6.20077 -0.74456 1.42882 1.47538 1.49682 1.55438 1.55974 1.78175 2.44830 2.56214 2.93835 3.15506 3.21448 3.26046 3.49601 3.68195 3.87163 4.04312 4.11236 4.21451 4.25592 4.31044 4.36915 4.41274 4.51005 4.54204 4.60804 4.66379 4.83998 4.87987 4.94260 4.98196 5.02560 5.09468 5.10494 5.16903 5.19140 5.20780 5.31319 5.33599 5.36312 5.51027 5.56503 5.60690 5.68522 5.92387 6.35582 6.44167 6.83094 7.40470 9.01015 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.004684 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.974667 B = 5976.133992 C = 6746.407728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 C -0.150 4.150 4 N -0.982 5.982 5 C 0.229 3.771 6 C -0.522 4.522 7 H 0.023 0.977 8 C -0.001 4.001 9 N -0.958 5.958 10 Si 0.939 3.061 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.218 1.218 14 S 2.571 3.429 15 O -0.976 6.976 16 O -1.000 7.000 17 C -0.606 4.606 18 C 0.059 3.941 19 C 0.198 3.802 20 N -0.445 5.445 21 C -0.095 4.095 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.152 4.152 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.015 0.985 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.175 0.825 37 H 0.198 0.802 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.037 0.963 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 -20.683 -4.746 25.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 C -0.209 4.209 4 N -0.819 5.819 5 C 0.105 3.895 6 C -0.562 4.562 7 H 0.042 0.958 8 C -0.197 4.197 9 N -0.599 5.599 10 Si 0.761 3.239 11 H -0.192 1.192 12 H -0.216 1.216 13 H -0.140 1.140 14 S 2.671 3.329 15 O -0.966 6.966 16 O -0.990 6.990 17 C -0.739 4.739 18 C 0.054 3.946 19 C -0.120 4.120 20 N -0.120 5.120 21 C -0.134 4.134 22 C -0.166 4.166 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.190 4.190 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.193 0.807 37 H 0.215 0.785 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.709 -20.499 -6.156 24.397 hybrid contribution 0.205 0.806 0.786 1.145 sum -11.504 -19.693 -5.370 23.431 Atomic orbital electron populations 1.22173 0.92171 1.03844 1.03306 1.20963 0.96432 0.93325 0.86060 1.22068 0.99197 0.97254 1.02340 1.57227 1.70227 1.41961 1.12527 1.19295 0.96656 0.94346 0.79237 1.21700 1.13172 1.19155 1.02141 0.95825 1.25971 0.99254 0.94701 0.99739 1.70113 1.39709 1.27378 1.22695 0.85853 0.80517 0.78243 0.79284 1.19202 1.21554 1.14005 1.05836 0.77013 0.76836 0.73262 1.93583 1.68603 1.86588 1.47871 1.93530 1.74586 1.86092 1.44841 1.30795 1.16367 1.09808 1.16955 1.18316 0.94208 0.96955 0.85168 1.29722 0.93870 0.93436 0.94974 1.81186 1.09733 1.08079 1.13010 1.21787 0.95358 0.89432 1.06801 1.21680 0.99029 0.98033 0.97868 1.21591 0.97089 0.96982 0.99769 1.21619 0.98676 0.94225 1.01789 1.22335 0.98970 0.99800 0.97915 0.92172 0.89861 0.89849 0.89223 0.96593 0.90345 0.92313 0.91923 0.93700 0.92843 0.80733 0.78473 0.85439 0.88927 0.88260 0.94333 0.91033 0.88813 0.94421 0.89983 0.92785 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.16 71.99 0.66 -2.83 16 2 C 0.14 4.47 3.19 44.99 0.14 4.61 16 3 C -0.15 -5.71 8.21 71.98 0.59 -5.12 16 4 N -0.98 -36.33 2.66 -497.42 -1.32 -37.65 16 5 C 0.23 9.59 3.65 85.63 0.31 9.90 16 6 C -0.52 -29.26 8.08 25.60 0.21 -29.06 16 7 H 0.02 1.54 7.32 -2.91 -0.02 1.52 16 8 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 9 N -0.96 -60.55 13.96 21.45 0.30 -60.25 16 10 Si 0.94 40.53 27.47 68.60 1.88 42.41 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 12 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.22 -7.71 6.54 99.48 0.65 -7.06 16 14 S 2.57 92.69 4.55 -56.49 -0.26 92.43 16 15 O -0.98 -43.29 14.60 -127.65 -1.86 -45.16 16 16 O -1.00 -42.73 15.27 -127.65 -1.95 -44.68 16 17 C -0.61 -11.41 5.15 71.98 0.37 -11.03 16 18 C 0.06 1.15 0.50 -53.99 -0.03 1.12 16 19 C 0.20 5.62 9.54 89.44 0.85 6.47 16 20 N -0.45 -15.47 18.54 20.01 0.37 -15.10 16 21 C -0.09 -0.96 4.71 30.60 0.14 -0.81 16 22 C -0.13 -1.44 5.70 30.59 0.17 -1.26 16 23 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 24 C -0.13 -2.32 5.70 30.61 0.17 -2.15 16 25 C -0.15 -3.24 4.23 30.61 0.13 -3.11 16 26 H 0.06 1.47 6.69 -2.39 -0.02 1.45 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 2.78 6.87 -2.39 -0.02 2.77 16 30 H 0.01 0.68 7.93 -2.39 -0.02 0.66 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.51 6.65 -2.39 -0.02 2.50 16 33 H 0.06 2.33 5.51 -2.39 -0.01 2.31 16 34 H 0.05 1.75 7.03 -2.39 -0.02 1.73 16 35 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.17 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.20 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.04 0.62 7.23 -2.39 -0.02 0.60 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.04 0.86 7.22 -2.39 -0.02 0.84 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.05 1.60 5.46 -2.39 -0.01 1.58 16 47 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -87.38 370.95 2.43 -84.94 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.89 Total: 17.06 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 4.38 Total: -34.01 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -0.65 Total: -113.00 kcal Atomic # 8 Polarization: -86.02 SS G_CDS: -3.81 Total: -89.84 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.88 Total: 42.41 kcal Atomic # 16 Polarization: 92.69 SS G_CDS: -0.26 Total: 92.43 kcal Total: -87.38 2.43 -84.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547792193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.214 kcal (2) G-P(sol) polarization free energy of solvation -87.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds