Wall clock time and date at job start Tue Mar 31 2020 16:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46735 * 2 1 4 4 N 1.46495 * 109.46834 * 119.99533 * 2 1 3 5 5 C 1.46496 * 120.00628 * 300.00218 * 4 2 1 6 6 C 1.50699 * 109.47598 * 270.00465 * 5 4 2 7 7 H 1.08005 * 119.99628 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00538 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99774 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00058 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46901 * 90.00358 * 10 8 6 12 12 H 1.48498 * 109.46773 * 209.99999 * 10 8 6 13 13 H 1.48494 * 109.46962 * 330.00109 * 10 8 6 14 14 C 1.34774 * 119.99828 * 120.00380 * 4 2 1 15 15 O 1.21279 * 120.00472 * 179.97438 * 14 4 2 16 16 C 1.50706 * 120.00020 * 0.02562 * 14 4 2 17 17 N 1.46496 * 109.47106 * 179.97438 * 16 14 4 18 18 C 1.36542 * 118.86178 * 269.72703 * 17 16 14 19 19 C 1.34295 * 122.40906 * 179.69893 * 18 17 16 20 20 C 1.46374 * 119.41441 * 0.56563 * 19 18 17 21 21 C 1.39579 * 122.03559 * 179.68822 * 20 19 18 22 22 C 1.36730 * 119.48983 * 180.02562 * 21 20 19 23 23 C 1.38897 * 120.88578 * 0.04038 * 22 21 20 24 24 C 1.36752 * 120.89347 * 359.97438 * 23 22 21 25 25 C 1.39468 * 119.49848 * 0.02562 * 24 23 22 26 26 C 1.34790 * 118.86096 * 90.00070 * 17 16 14 27 27 O 1.21788 * 120.38845 * 359.97279 * 26 17 16 28 28 H 1.08995 * 109.47649 * 300.00037 * 1 2 3 29 29 H 1.08999 * 109.46857 * 60.00452 * 1 2 3 30 30 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47126 * 239.99952 * 2 1 3 32 32 H 1.09001 * 109.46826 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47309 * 299.99824 * 3 2 1 34 34 H 1.09005 * 109.47036 * 59.99712 * 3 2 1 35 35 H 1.09008 * 109.47096 * 29.99824 * 5 4 2 36 36 H 1.09003 * 109.47776 * 149.99700 * 5 4 2 37 37 H 0.97002 * 119.99965 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.46953 * 299.99667 * 16 14 4 39 39 H 1.09000 * 109.47318 * 59.99264 * 16 14 4 40 40 H 1.07996 * 118.78990 * 359.97438 * 18 17 16 41 41 H 1.07993 * 120.28872 * 180.31322 * 19 18 17 42 42 H 1.07993 * 120.25543 * 0.02562 * 21 20 19 43 43 H 1.07992 * 119.55110 * 180.02562 * 22 21 20 44 44 H 1.08000 * 119.55228 * 179.97438 * 23 22 21 45 45 H 1.07994 * 120.24893 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7030 0.8020 2.9831 7 1 3.5430 1.0359 2.3458 8 6 2.5810 1.4110 4.2140 9 7 1.5584 1.1257 4.9902 10 14 3.8688 2.6401 4.7798 11 1 3.4766 4.0042 4.3434 12 1 3.9702 2.6043 6.2609 13 1 5.1833 2.2888 4.1850 14 6 2.7932 -1.7863 1.0726 15 8 3.1978 -2.3577 2.0628 16 6 3.1578 -2.3009 -0.2961 17 7 4.0005 -3.4916 -0.1616 18 6 5.3560 -3.3370 -0.1064 19 6 6.1946 -4.3781 0.0222 20 6 5.6502 -5.7349 0.0950 21 6 6.4715 -6.8563 0.2224 22 6 5.9072 -8.1001 0.2852 23 6 4.5291 -8.2619 0.2231 24 6 3.7002 -7.1814 0.0981 25 6 4.2474 -5.9002 0.0316 26 6 3.4111 -4.7024 -0.1022 27 8 2.1986 -4.8008 -0.1592 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6765 1.9564 0.8900 35 1 0.6903 0.2975 2.4844 36 1 1.6237 -1.0225 3.2292 37 1 1.4727 1.5539 5.8564 38 1 2.2497 -2.5577 -0.8415 39 1 3.7030 -1.5300 -0.8408 40 1 5.7686 -2.3406 -0.1640 41 1 7.2613 -4.2159 0.0674 42 1 7.5443 -6.7423 0.2709 43 1 6.5417 -8.9684 0.3841 44 1 4.1064 -9.2544 0.2742 45 1 2.6302 -7.3191 0.0512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548060246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:52 Heat of formation + Delta-G solvation = -22.563992 kcal Electronic energy + Delta-G solvation = -28099.603443 eV Core-core repulsion = 24275.364702 eV Total energy + Delta-G solvation = -3824.238741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25842 -39.31013 -38.24529 -36.78456 -35.93687 -33.14470 -32.73756 -31.42082 -30.90971 -29.52296 -28.69107 -26.87387 -26.54846 -23.98192 -23.72898 -22.58839 -21.73130 -21.36418 -18.72908 -18.18424 -17.87767 -17.22802 -16.82343 -16.48735 -15.45891 -15.19122 -15.15192 -14.96763 -14.65125 -14.45326 -14.06062 -13.92058 -13.54533 -13.38785 -13.23215 -12.86294 -12.73637 -12.67558 -12.36194 -11.92324 -11.77845 -11.73078 -11.65982 -11.53294 -11.23096 -11.14497 -10.97369 -10.89297 -10.62315 -10.43331 -10.06424 -10.00431 -9.73157 -9.57932 -9.16748 -8.92781 -8.44469 -7.72581 -7.69924 -6.05525 -4.09435 0.71615 0.90966 2.19326 2.56747 2.92649 3.25213 3.27552 3.35059 3.38244 3.80161 4.02240 4.40398 4.42183 4.52651 4.69669 4.80053 4.89256 4.96650 5.03818 5.16493 5.18248 5.26792 5.28859 5.31190 5.49780 5.54563 5.58837 5.75503 5.81791 5.86946 5.97695 6.09686 6.17931 6.23499 6.31538 6.33407 6.34698 6.52788 6.56917 6.78155 6.89910 7.05478 7.19757 7.44741 7.50057 7.90013 7.96972 8.21906 8.34063 8.85168 8.99985 9.54448 11.02713 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.003379 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.693986 B = 8283.390543 C = 9069.543137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.588 5.588 5 C 0.247 3.753 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.492 3.508 15 O -0.528 6.528 16 C 0.072 3.928 17 N -0.501 5.501 18 C 0.136 3.864 19 C -0.217 4.217 20 C 0.013 3.987 21 C -0.130 4.130 22 C -0.086 4.086 23 C -0.146 4.146 24 C -0.046 4.046 25 C -0.151 4.151 26 C 0.551 3.449 27 O -0.524 6.524 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.401 -10.850 -15.680 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.215 4.215 4 N -0.320 5.320 5 C 0.128 3.872 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.277 3.723 15 O -0.404 6.404 16 C -0.053 4.053 17 N -0.215 5.215 18 C 0.015 3.985 19 C -0.240 4.240 20 C 0.011 3.989 21 C -0.148 4.148 22 C -0.104 4.104 23 C -0.164 4.164 24 C -0.065 4.065 25 C -0.154 4.154 26 C 0.347 3.653 27 O -0.402 6.402 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.174 0.826 41 H 0.165 0.835 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.726 -11.123 -14.988 19.840 hybrid contribution 0.749 0.913 0.535 1.296 sum 7.475 -10.210 -14.454 19.210 Atomic orbital electron populations 1.22164 0.95280 1.02094 1.02582 1.21039 0.94542 0.94223 0.87480 1.22148 1.01275 0.95515 1.02553 1.48319 1.48709 1.26020 1.08982 1.19265 0.96004 0.94979 0.76925 1.21400 1.08900 1.23449 1.02174 0.92387 1.24935 0.95767 0.97137 0.96331 1.69932 1.29519 1.43122 1.10696 0.86535 0.81927 0.81201 0.77974 1.20672 1.21158 1.19975 1.20361 0.80224 0.81531 0.90226 1.90720 1.53138 1.57657 1.38930 1.21924 0.97857 0.87096 0.98438 1.44662 1.06239 1.07491 1.63067 1.21444 0.81764 1.00641 0.94632 1.21349 0.99646 0.89828 1.13184 1.19132 0.91761 0.93923 0.94040 1.20841 0.99708 0.91606 1.02637 1.21019 0.95137 0.97430 0.96818 1.20855 0.93556 0.98844 1.03178 1.20816 1.00692 0.90556 0.94465 1.19831 0.92902 0.93565 1.09131 1.18096 0.87796 0.82732 0.76712 1.90852 1.13415 1.85912 1.50055 0.91170 0.92120 0.92696 0.91069 0.92738 0.93079 0.89893 0.94599 0.94115 0.92743 0.86258 0.86857 0.82618 0.83506 0.85150 0.85718 0.85570 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.17 37.16 0.34 -2.05 16 2 C 0.13 2.06 3.17 -67.93 -0.22 1.84 16 3 C -0.16 -2.42 8.47 37.16 0.31 -2.10 16 4 N -0.59 -12.15 2.39 -167.47 -0.40 -12.55 16 5 C 0.25 6.34 4.59 -5.20 -0.02 6.32 16 6 C -0.52 -14.18 7.83 -34.44 -0.27 -14.45 16 7 H 0.06 1.56 7.63 -52.48 -0.40 1.16 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 10 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.49 10.26 7.73 -10.98 -0.08 10.18 16 15 O -0.53 -13.62 16.01 5.56 0.09 -13.53 16 16 C 0.07 1.10 4.07 -5.19 -0.02 1.08 16 17 N -0.50 -7.87 2.10 -119.03 -0.25 -8.12 16 18 C 0.14 1.75 10.16 -16.85 -0.17 1.58 16 19 C -0.22 -2.53 10.03 -37.70 -0.38 -2.91 16 20 C 0.01 0.17 5.89 -104.92 -0.62 -0.45 16 21 C -0.13 -1.34 9.83 -39.63 -0.39 -1.73 16 22 C -0.09 -0.81 9.96 -39.88 -0.40 -1.21 16 23 C -0.15 -1.53 9.96 -39.88 -0.40 -1.93 16 24 C -0.05 -0.62 9.62 -39.66 -0.38 -1.00 16 25 C -0.15 -2.31 5.90 -104.82 -0.62 -2.92 16 26 C 0.55 9.72 7.61 -12.84 -0.10 9.62 16 27 O -0.52 -10.56 16.06 5.11 0.08 -10.48 16 28 H 0.07 1.17 6.66 -51.93 -0.35 0.82 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.88 5.77 -51.93 -0.30 0.58 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 35 H 0.04 0.93 6.43 -51.92 -0.33 0.60 16 36 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.12 1.72 6.99 -51.93 -0.36 1.36 16 39 H 0.11 1.26 7.60 -51.93 -0.39 0.86 16 40 H 0.16 1.55 7.97 -52.49 -0.42 1.13 16 41 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.13 1.75 7.80 -52.49 -0.41 1.34 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -36.07 374.46 -8.85 -44.93 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.23 Total: 1.79 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -3.50 Total: 1.46 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.09 Total: -46.27 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.17 Total: -24.00 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.07 -8.85 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548060246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.362 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds