Wall clock time and date at job start Tue Mar 31 2020 16:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46735 * 2 1 4 4 N 1.46495 * 109.46834 * 119.99533 * 2 1 3 5 5 C 1.46496 * 120.00628 * 300.00218 * 4 2 1 6 6 C 1.50699 * 109.47598 * 270.00465 * 5 4 2 7 7 H 1.08005 * 119.99628 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00538 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99774 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00058 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46901 * 90.00358 * 10 8 6 12 12 H 1.48498 * 109.46773 * 209.99999 * 10 8 6 13 13 H 1.48494 * 109.46962 * 330.00109 * 10 8 6 14 14 C 1.34774 * 119.99828 * 120.00380 * 4 2 1 15 15 O 1.21279 * 120.00472 * 179.97438 * 14 4 2 16 16 C 1.50706 * 120.00020 * 0.02562 * 14 4 2 17 17 N 1.46496 * 109.47106 * 179.97438 * 16 14 4 18 18 C 1.36542 * 118.86178 * 269.72703 * 17 16 14 19 19 C 1.34295 * 122.40906 * 179.69893 * 18 17 16 20 20 C 1.46374 * 119.41441 * 0.56563 * 19 18 17 21 21 C 1.39579 * 122.03559 * 179.68822 * 20 19 18 22 22 C 1.36730 * 119.48983 * 180.02562 * 21 20 19 23 23 C 1.38897 * 120.88578 * 0.04038 * 22 21 20 24 24 C 1.36752 * 120.89347 * 359.97438 * 23 22 21 25 25 C 1.39468 * 119.49848 * 0.02562 * 24 23 22 26 26 C 1.34790 * 118.86096 * 90.00070 * 17 16 14 27 27 O 1.21788 * 120.38845 * 359.97279 * 26 17 16 28 28 H 1.08995 * 109.47649 * 300.00037 * 1 2 3 29 29 H 1.08999 * 109.46857 * 60.00452 * 1 2 3 30 30 H 1.09003 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47126 * 239.99952 * 2 1 3 32 32 H 1.09001 * 109.46826 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47309 * 299.99824 * 3 2 1 34 34 H 1.09005 * 109.47036 * 59.99712 * 3 2 1 35 35 H 1.09008 * 109.47096 * 29.99824 * 5 4 2 36 36 H 1.09003 * 109.47776 * 149.99700 * 5 4 2 37 37 H 0.97002 * 119.99965 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.46953 * 299.99667 * 16 14 4 39 39 H 1.09000 * 109.47318 * 59.99264 * 16 14 4 40 40 H 1.07996 * 118.78990 * 359.97438 * 18 17 16 41 41 H 1.07993 * 120.28872 * 180.31322 * 19 18 17 42 42 H 1.07993 * 120.25543 * 0.02562 * 21 20 19 43 43 H 1.07992 * 119.55110 * 180.02562 * 22 21 20 44 44 H 1.08000 * 119.55228 * 179.97438 * 23 22 21 45 45 H 1.07994 * 120.24893 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7030 0.8020 2.9831 7 1 3.5430 1.0359 2.3458 8 6 2.5810 1.4110 4.2140 9 7 1.5584 1.1257 4.9902 10 14 3.8688 2.6401 4.7798 11 1 3.4766 4.0042 4.3434 12 1 3.9702 2.6043 6.2609 13 1 5.1833 2.2888 4.1850 14 6 2.7932 -1.7863 1.0726 15 8 3.1978 -2.3577 2.0628 16 6 3.1578 -2.3009 -0.2961 17 7 4.0005 -3.4916 -0.1616 18 6 5.3560 -3.3370 -0.1064 19 6 6.1946 -4.3781 0.0222 20 6 5.6502 -5.7349 0.0950 21 6 6.4715 -6.8563 0.2224 22 6 5.9072 -8.1001 0.2852 23 6 4.5291 -8.2619 0.2231 24 6 3.7002 -7.1814 0.0981 25 6 4.2474 -5.9002 0.0316 26 6 3.4111 -4.7024 -0.1022 27 8 2.1986 -4.8008 -0.1592 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6765 1.9564 0.8900 35 1 0.6903 0.2975 2.4844 36 1 1.6237 -1.0225 3.2292 37 1 1.4727 1.5539 5.8564 38 1 2.2497 -2.5577 -0.8415 39 1 3.7030 -1.5300 -0.8408 40 1 5.7686 -2.3406 -0.1640 41 1 7.2613 -4.2159 0.0674 42 1 7.5443 -6.7423 0.2709 43 1 6.5417 -8.9684 0.3841 44 1 4.1064 -9.2544 0.2742 45 1 2.6302 -7.3191 0.0512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548060246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:50 Heat of formation + Delta-G solvation = -45.021583 kcal Electronic energy + Delta-G solvation = -28100.577277 eV Core-core repulsion = 24275.364702 eV Total energy + Delta-G solvation = -3825.212575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.40462 -40.76618 -39.33827 -38.02030 -37.49139 -34.98904 -34.01181 -32.49159 -32.34831 -30.69245 -30.06703 -28.38651 -27.94084 -25.33107 -24.80377 -24.17004 -22.79674 -22.68174 -20.10472 -19.31822 -18.85854 -18.63985 -18.59926 -18.11142 -16.91629 -16.48655 -16.34604 -16.23098 -16.14571 -15.74869 -15.40101 -14.90099 -14.86221 -14.79883 -14.52543 -14.16875 -13.98172 -13.72311 -13.60265 -13.39429 -13.30902 -13.06910 -12.95550 -12.83394 -12.68658 -12.64643 -12.51685 -12.26264 -12.11113 -12.00346 -11.71442 -11.55305 -11.21155 -10.95249 -10.62199 -10.38766 -10.03946 -9.50474 -8.70781 -8.20334 -6.33048 -0.25100 -0.01055 1.19815 1.36237 1.39467 1.43873 1.49456 1.66952 1.91022 2.28131 2.43696 3.01204 3.09936 3.38335 3.51641 3.65715 3.81620 3.90091 3.93941 4.06925 4.08537 4.14123 4.26271 4.36659 4.36930 4.42478 4.65627 4.80015 4.84820 4.89093 4.91456 4.97356 5.02805 5.05077 5.09590 5.17793 5.27598 5.40074 5.46759 5.49495 5.56857 5.61514 5.63462 5.83234 5.95598 6.07663 6.10343 6.64788 6.76055 6.79277 7.25076 7.40534 8.87725 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.003379 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.693986 B = 8283.390543 C = 9069.543137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 C -0.150 4.150 4 N -0.591 5.591 5 C 0.266 3.734 6 C -0.523 4.523 7 H 0.062 0.938 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.482 3.518 15 O -0.590 6.590 16 C 0.085 3.915 17 N -0.504 5.504 18 C 0.103 3.897 19 C -0.200 4.200 20 C -0.007 4.007 21 C -0.124 4.124 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.074 4.074 25 C -0.186 4.186 26 C 0.533 3.467 27 O -0.574 6.574 28 H 0.039 0.961 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.025 0.975 36 H -0.018 1.018 37 H 0.264 0.736 38 H 0.127 0.873 39 H 0.165 0.835 40 H 0.186 0.814 41 H 0.186 0.814 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.154 0.846 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.881 -10.856 -18.095 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 C -0.208 4.208 4 N -0.323 5.323 5 C 0.145 3.855 6 C -0.562 4.562 7 H 0.080 0.920 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.189 1.189 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.270 3.730 15 O -0.471 6.471 16 C -0.041 4.041 17 N -0.218 5.218 18 C -0.016 4.016 19 C -0.223 4.223 20 C -0.009 4.009 21 C -0.142 4.142 22 C -0.097 4.097 23 C -0.156 4.156 24 C -0.093 4.093 25 C -0.189 4.189 26 C 0.330 3.670 27 O -0.456 6.456 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.001 0.999 37 H 0.073 0.927 38 H 0.145 0.855 39 H 0.182 0.818 40 H 0.203 0.797 41 H 0.203 0.797 42 H 0.184 0.816 43 H 0.183 0.817 44 H 0.172 0.828 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.239 -11.102 -17.465 23.090 hybrid contribution -0.308 0.760 1.280 1.520 sum 9.931 -10.343 -16.185 21.623 Atomic orbital electron populations 1.22144 0.94700 1.01826 1.03060 1.21506 0.95149 0.94664 0.86691 1.22079 1.01172 0.94933 1.02633 1.48356 1.48645 1.26527 1.08722 1.18644 0.95534 0.92441 0.78899 1.21636 1.08940 1.23202 1.02378 0.91989 1.25892 0.97928 0.99262 0.96511 1.70082 1.31615 1.44578 1.11149 0.85421 0.79134 0.79176 0.77138 1.18859 1.21316 1.19238 1.21417 0.78974 0.80626 0.92022 1.90676 1.55469 1.59346 1.41623 1.21954 0.99285 0.88270 0.94548 1.44723 1.07476 1.06792 1.62772 1.22032 0.80602 1.02646 0.96299 1.21893 1.01304 0.88922 1.10160 1.19506 0.91050 0.95748 0.94622 1.21309 1.01191 0.90909 1.00804 1.21526 0.94905 0.98667 0.94577 1.21236 0.94172 0.99056 1.01169 1.20922 1.00711 0.91251 0.96446 1.20012 0.94146 0.93257 1.11471 1.18676 0.87729 0.84174 0.76410 1.90792 1.15202 1.86729 1.52885 0.94208 0.88013 0.93376 0.86577 0.92789 0.88886 0.93826 0.95759 0.99942 0.92694 0.85502 0.81780 0.79727 0.79726 0.81631 0.81674 0.82845 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 9.17 71.98 0.66 -3.93 16 2 C 0.12 3.68 3.17 45.00 0.14 3.82 16 3 C -0.15 -4.35 8.47 71.98 0.61 -3.74 16 4 N -0.59 -25.20 2.39 -802.14 -1.91 -27.12 16 5 C 0.27 14.57 4.59 85.63 0.39 14.96 16 6 C -0.52 -29.47 7.83 25.60 0.20 -29.27 16 7 H 0.06 3.37 7.63 -2.91 -0.02 3.34 16 8 C 0.00 0.13 5.46 84.66 0.46 0.59 16 9 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 10 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 11 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.48 20.76 7.73 87.66 0.68 21.43 16 15 O -0.59 -32.31 16.01 -3.02 -0.05 -32.36 16 16 C 0.08 2.50 4.07 85.64 0.35 2.85 16 17 N -0.50 -15.90 2.10 -648.66 -1.36 -17.26 16 18 C 0.10 2.49 10.16 83.06 0.84 3.33 16 19 C -0.20 -4.21 10.03 23.49 0.24 -3.97 16 20 C -0.01 -0.18 5.89 -20.06 -0.12 -0.30 16 21 C -0.12 -2.14 9.83 22.24 0.22 -1.92 16 22 C -0.08 -1.20 9.96 22.07 0.22 -0.98 16 23 C -0.14 -2.66 9.96 22.08 0.22 -2.44 16 24 C -0.07 -2.06 9.62 22.22 0.21 -1.84 16 25 C -0.19 -5.84 5.90 -19.99 -0.12 -5.96 16 26 C 0.53 19.75 7.61 86.45 0.66 20.41 16 27 O -0.57 -24.92 16.06 -4.63 -0.07 -25.00 16 28 H 0.04 1.37 6.66 -2.39 -0.02 1.36 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.12 2.49 5.77 -2.39 -0.01 2.48 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.61 6.92 -2.38 -0.02 1.60 16 35 H 0.02 1.37 6.43 -2.38 -0.02 1.36 16 36 H -0.02 -1.15 7.42 -2.39 -0.02 -1.17 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.13 3.59 6.99 -2.39 -0.02 3.57 16 39 H 0.16 3.09 7.60 -2.39 -0.02 3.07 16 40 H 0.19 3.17 7.97 -2.91 -0.02 3.14 16 41 H 0.19 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 44 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.12 3.49 7.80 -2.91 -0.02 3.47 16 Total: -1.00 -88.72 374.46 5.78 -82.93 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.00 Total: 16.30 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 5.87 Total: 13.03 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -2.99 Total: -101.53 kcal Atomic # 8 Polarization: -57.23 SS G_CDS: -0.12 Total: -57.35 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -88.72 5.78 -82.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548060246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.913 kcal (2) G-P(sol) polarization free energy of solvation -88.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds