Wall clock time and date at job start Tue Mar 31 2020 16:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00191 * 2 1 4 4 N 1.46498 * 109.47287 * 124.99703 * 3 2 1 5 5 C 1.46501 * 119.99933 * 270.00164 * 4 3 2 6 6 C 1.50705 * 109.47228 * 269.99735 * 5 4 3 7 7 H 1.07997 * 119.99496 * 0.02562 * 6 5 4 8 8 C 1.37867 * 120.00095 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00321 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00186 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46913 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47420 * 119.99518 * 10 8 6 13 13 H 1.48496 * 109.47192 * 240.00154 * 10 8 6 14 14 C 1.34771 * 119.99954 * 90.00080 * 4 3 2 15 15 O 1.21284 * 120.00285 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00099 * 359.97438 * 14 4 3 17 17 H 1.08993 * 110.88923 * 303.81671 * 16 14 4 18 18 C 1.54636 * 110.96653 * 67.62488 * 16 14 4 19 19 C 1.51282 * 104.19473 * 93.31804 * 18 16 14 20 20 O 1.21284 * 124.94003 * 196.26879 * 19 18 16 21 21 N 1.34417 * 110.11697 * 16.25629 * 19 18 16 22 22 C 1.39925 * 124.35397 * 180.42669 * 21 19 18 23 23 C 1.38881 * 120.06655 * 353.97398 * 22 21 19 24 24 C 1.38114 * 119.92689 * 179.76498 * 23 22 21 25 25 C 1.38278 * 120.07185 * 0.48865 * 24 23 22 26 26 C 1.38289 * 120.13879 * 359.75875 * 25 24 23 27 27 C 1.38110 * 120.07314 * 0.02562 * 26 25 24 28 28 C 1.46762 * 111.30084 * 0.40256 * 21 19 18 29 29 H 1.07997 * 120.00281 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99942 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99823 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47198 * 5.00044 * 3 2 1 33 33 H 1.08990 * 109.47133 * 245.00018 * 3 2 1 34 34 H 1.08993 * 109.47213 * 29.99931 * 5 4 3 35 35 H 1.08999 * 109.47231 * 150.00228 * 5 4 3 36 36 H 0.96998 * 120.00479 * 179.97438 * 9 8 6 37 37 H 1.08997 * 110.48438 * 334.64643 * 18 16 14 38 38 H 1.09000 * 110.59601 * 212.05173 * 18 16 14 39 39 H 1.08007 * 120.03338 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.96025 * 180.20492 * 24 23 22 41 41 H 1.07996 * 119.92812 * 179.74814 * 25 24 23 42 42 H 1.07997 * 119.95997 * 179.97438 * 26 25 24 43 43 H 1.07993 * 120.03333 * 179.97438 * 27 26 25 44 44 H 1.09001 * 110.24514 * 101.98482 * 28 21 19 45 45 H 1.09004 * 110.24943 * 223.98827 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3033 3.8370 1.6365 8 6 2.5193 4.0666 3.6085 9 7 1.9598 3.4659 4.6360 10 14 2.8725 5.8997 3.6771 11 1 3.5004 6.3308 2.4023 12 1 1.6020 6.6413 3.8792 13 1 3.7963 6.1839 4.8044 14 6 4.2496 0.8662 0.9825 15 8 5.0197 0.8879 1.9193 16 6 4.6969 0.3173 -0.3478 17 1 4.0409 -0.4889 -0.6760 18 6 4.7721 1.4372 -1.4115 19 6 6.2108 1.9020 -1.3597 20 8 6.6219 2.9426 -1.8278 21 7 6.9672 0.9940 -0.7193 22 6 8.3419 1.1283 -0.4951 23 6 9.0368 2.1939 -1.0522 24 6 10.3927 2.3264 -0.8251 25 6 11.0602 1.3940 -0.0523 26 6 10.3719 0.3290 0.4997 27 6 9.0152 0.1933 0.2800 28 6 6.1660 -0.1563 -0.2848 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4025 -0.9313 34 1 1.4887 1.6967 2.5459 35 1 3.0988 1.3604 3.2260 36 1 1.7315 3.9744 5.4298 37 1 4.0979 2.2540 -1.1537 38 1 4.5335 1.0441 -2.3997 39 1 8.5169 2.9199 -1.6597 40 1 10.9331 3.1566 -1.2554 41 1 12.1212 1.4976 0.1205 42 1 10.8962 -0.3977 1.1024 43 1 8.4785 -0.6389 0.7110 44 1 6.3197 -0.9992 -0.9586 45 1 6.4288 -0.4354 0.7356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553102991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:27 Heat of formation + Delta-G solvation = -4.677416 kcal Electronic energy + Delta-G solvation = -28233.337633 eV Core-core repulsion = 24409.874512 eV Total energy + Delta-G solvation = -3823.463121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34681 -39.28987 -38.33203 -36.44327 -35.75704 -33.44792 -33.09861 -32.08327 -30.90587 -29.29943 -27.87854 -27.58272 -25.69340 -24.19865 -23.06372 -22.55762 -21.36570 -19.98929 -19.85656 -18.68673 -17.74715 -17.10070 -16.55469 -16.40337 -15.80665 -15.59528 -15.44330 -14.75351 -14.71135 -14.40092 -14.30390 -13.95727 -13.60090 -13.51198 -13.32274 -13.25535 -13.01113 -12.61866 -12.51568 -12.08671 -11.94126 -11.66050 -11.64224 -11.45716 -11.30436 -11.13815 -11.11296 -10.90365 -10.65153 -10.26249 -10.20763 -9.69212 -9.61084 -9.26250 -9.07954 -8.92325 -8.46829 -7.89323 -7.81648 -6.08173 -4.12989 1.28472 1.43030 2.34861 2.55816 2.80795 3.12806 3.28795 3.37175 3.42407 3.72671 3.88753 4.11377 4.29244 4.41968 4.63100 4.78782 4.92431 4.96795 5.05841 5.17364 5.23863 5.25044 5.26596 5.34636 5.39208 5.43901 5.50160 5.56062 5.63120 5.66518 5.69968 5.93498 6.04067 6.08946 6.22724 6.40023 6.55397 6.58340 6.70010 6.81313 6.98029 7.06800 7.10345 7.36113 7.44208 7.87790 8.02196 8.17415 8.25529 8.79619 8.95590 9.52743 10.99937 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.004158 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.560117 B = 6733.099766 C = 8178.272043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.170 4.170 3 C 0.125 3.875 4 N -0.587 5.587 5 C 0.248 3.752 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.510 3.490 15 O -0.529 6.529 16 C -0.126 4.126 17 H 0.123 0.877 18 C -0.148 4.148 19 C 0.522 3.478 20 O -0.510 6.510 21 N -0.552 5.552 22 C 0.175 3.825 23 C -0.159 4.159 24 C -0.094 4.094 25 C -0.152 4.152 26 C -0.094 4.094 27 C -0.155 4.155 28 C 0.110 3.890 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.153 0.847 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -10.859 -14.144 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.002 3.998 4 N -0.317 5.317 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.295 3.705 15 O -0.406 6.406 16 C -0.148 4.148 17 H 0.141 0.859 18 C -0.188 4.188 19 C 0.312 3.688 20 O -0.385 6.385 21 N -0.275 5.275 22 C 0.081 3.919 23 C -0.180 4.180 24 C -0.112 4.112 25 C -0.171 4.171 26 C -0.112 4.112 27 C -0.175 4.175 28 C -0.012 4.012 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.171 0.829 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.104 0.896 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.561 -10.229 -13.684 18.682 hybrid contribution -0.056 0.909 0.311 0.962 sum 7.504 -9.321 -13.373 17.945 Atomic orbital electron populations 1.23844 0.95878 1.01859 1.00121 1.23383 0.96406 0.98838 1.00335 1.20818 0.93328 0.95693 0.89981 1.48181 1.10100 1.59679 1.13779 1.19314 0.95490 0.93837 0.78451 1.21442 1.40619 0.93234 1.01341 0.92447 1.24901 0.94934 0.98745 0.95301 1.69934 1.42021 1.36126 1.05158 0.86481 0.77957 0.84991 0.78303 1.19710 1.20877 1.20835 1.19877 0.82723 0.79157 0.88732 1.90705 1.52363 1.56019 1.41475 1.22413 0.97311 0.99579 0.95541 0.85885 1.22509 0.95107 1.00379 1.00781 1.20955 0.88629 0.82672 0.76587 1.90612 1.77481 1.23264 1.47191 1.45722 1.06289 1.21409 1.54047 1.17794 0.81496 0.95970 0.96623 1.21641 0.94807 0.98851 1.02651 1.21023 0.93795 0.98583 0.97830 1.21080 0.99932 0.95857 1.00212 1.20905 0.93477 0.97955 0.98908 1.20808 0.95077 1.00481 1.01173 1.22179 0.88420 0.87505 1.03106 0.88715 0.88241 0.87714 0.89222 0.90194 0.94779 0.93837 0.92739 0.86302 0.86340 0.82932 0.85862 0.86235 0.85790 0.85581 0.89616 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 14.32 29.01 0.42 -1.65 16 2 C -0.17 -2.09 9.67 -36.03 -0.35 -2.44 16 3 C 0.13 1.82 5.30 -5.20 -0.03 1.79 16 4 N -0.59 -11.44 2.43 -176.44 -0.43 -11.87 16 5 C 0.25 6.25 5.16 -5.19 -0.03 6.22 16 6 C -0.53 -14.76 9.39 -34.44 -0.32 -15.09 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 10 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.51 9.61 6.99 -10.99 -0.08 9.53 16 15 O -0.53 -12.47 15.11 5.55 0.08 -12.38 16 16 C -0.13 -1.58 2.63 -90.14 -0.24 -1.82 16 17 H 0.12 1.07 7.63 -51.93 -0.40 0.67 16 18 C -0.15 -1.81 5.12 -26.74 -0.14 -1.95 16 19 C 0.52 8.36 7.92 -10.86 -0.09 8.28 16 20 O -0.51 -9.59 14.82 5.55 0.08 -9.51 16 21 N -0.55 -8.27 3.14 -112.26 -0.35 -8.63 16 22 C 0.18 2.68 6.60 -83.69 -0.55 2.13 16 23 C -0.16 -2.45 9.29 -39.39 -0.37 -2.81 16 24 C -0.09 -1.20 10.04 -39.61 -0.40 -1.60 16 25 C -0.15 -1.75 10.04 -39.55 -0.40 -2.14 16 26 C -0.09 -1.09 10.04 -39.61 -0.40 -1.49 16 27 C -0.15 -2.05 9.42 -39.39 -0.37 -2.42 16 28 C 0.11 1.34 5.84 -3.12 -0.02 1.32 16 29 H 0.09 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.10 1.15 7.84 -52.48 -0.41 0.74 16 31 H 0.10 1.14 7.82 -52.49 -0.41 0.73 16 32 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 33 H 0.08 0.92 4.48 -51.93 -0.23 0.69 16 34 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.12 1.63 6.27 -51.93 -0.33 1.30 16 38 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.15 2.56 5.26 -52.48 -0.28 2.29 16 40 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.47 6.75 -52.49 -0.35 1.12 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.11 1.44 6.11 -51.93 -0.32 1.12 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -35.56 372.87 -8.74 -44.30 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.01 Total: 3.40 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.44 Total: -2.43 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.05 Total: -46.12 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.17 Total: -21.89 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.56 -8.74 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553102991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.624 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds