Wall clock time and date at job start Tue Mar 31 2020 16:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00191 * 2 1 4 4 N 1.46498 * 109.47287 * 124.99703 * 3 2 1 5 5 C 1.46501 * 119.99933 * 270.00164 * 4 3 2 6 6 C 1.50705 * 109.47228 * 269.99735 * 5 4 3 7 7 H 1.07997 * 119.99496 * 0.02562 * 6 5 4 8 8 C 1.37867 * 120.00095 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00321 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00186 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46913 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47420 * 119.99518 * 10 8 6 13 13 H 1.48496 * 109.47192 * 240.00154 * 10 8 6 14 14 C 1.34771 * 119.99954 * 90.00080 * 4 3 2 15 15 O 1.21284 * 120.00285 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00099 * 359.97438 * 14 4 3 17 17 H 1.08993 * 110.88923 * 303.81671 * 16 14 4 18 18 C 1.54636 * 110.96653 * 67.62488 * 16 14 4 19 19 C 1.51282 * 104.19473 * 93.31804 * 18 16 14 20 20 O 1.21284 * 124.94003 * 196.26879 * 19 18 16 21 21 N 1.34417 * 110.11697 * 16.25629 * 19 18 16 22 22 C 1.39925 * 124.35397 * 180.42669 * 21 19 18 23 23 C 1.38881 * 120.06655 * 353.97398 * 22 21 19 24 24 C 1.38114 * 119.92689 * 179.76498 * 23 22 21 25 25 C 1.38278 * 120.07185 * 0.48865 * 24 23 22 26 26 C 1.38289 * 120.13879 * 359.75875 * 25 24 23 27 27 C 1.38110 * 120.07314 * 0.02562 * 26 25 24 28 28 C 1.46762 * 111.30084 * 0.40256 * 21 19 18 29 29 H 1.07997 * 120.00281 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99942 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99823 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47198 * 5.00044 * 3 2 1 33 33 H 1.08990 * 109.47133 * 245.00018 * 3 2 1 34 34 H 1.08993 * 109.47213 * 29.99931 * 5 4 3 35 35 H 1.08999 * 109.47231 * 150.00228 * 5 4 3 36 36 H 0.96998 * 120.00479 * 179.97438 * 9 8 6 37 37 H 1.08997 * 110.48438 * 334.64643 * 18 16 14 38 38 H 1.09000 * 110.59601 * 212.05173 * 18 16 14 39 39 H 1.08007 * 120.03338 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.96025 * 180.20492 * 24 23 22 41 41 H 1.07996 * 119.92812 * 179.74814 * 25 24 23 42 42 H 1.07997 * 119.95997 * 179.97438 * 26 25 24 43 43 H 1.07993 * 120.03333 * 179.97438 * 27 26 25 44 44 H 1.09001 * 110.24514 * 101.98482 * 28 21 19 45 45 H 1.09004 * 110.24943 * 223.98827 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3033 3.8370 1.6365 8 6 2.5193 4.0666 3.6085 9 7 1.9598 3.4659 4.6360 10 14 2.8725 5.8997 3.6771 11 1 3.5004 6.3308 2.4023 12 1 1.6020 6.6413 3.8792 13 1 3.7963 6.1839 4.8044 14 6 4.2496 0.8662 0.9825 15 8 5.0197 0.8879 1.9193 16 6 4.6969 0.3173 -0.3478 17 1 4.0409 -0.4889 -0.6760 18 6 4.7721 1.4372 -1.4115 19 6 6.2108 1.9020 -1.3597 20 8 6.6219 2.9426 -1.8278 21 7 6.9672 0.9940 -0.7193 22 6 8.3419 1.1283 -0.4951 23 6 9.0368 2.1939 -1.0522 24 6 10.3927 2.3264 -0.8251 25 6 11.0602 1.3940 -0.0523 26 6 10.3719 0.3290 0.4997 27 6 9.0152 0.1933 0.2800 28 6 6.1660 -0.1563 -0.2848 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4025 -0.9313 34 1 1.4887 1.6967 2.5459 35 1 3.0988 1.3604 3.2260 36 1 1.7315 3.9744 5.4298 37 1 4.0979 2.2540 -1.1537 38 1 4.5335 1.0441 -2.3997 39 1 8.5169 2.9199 -1.6597 40 1 10.9331 3.1566 -1.2554 41 1 12.1212 1.4976 0.1205 42 1 10.8962 -0.3977 1.1024 43 1 8.4785 -0.6389 0.7110 44 1 6.3197 -0.9992 -0.9586 45 1 6.4288 -0.4354 0.7356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553102991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:26 Heat of formation + Delta-G solvation = -26.842734 kcal Electronic energy + Delta-G solvation = -28234.298794 eV Core-core repulsion = 24409.874512 eV Total energy + Delta-G solvation = -3824.424281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.48061 -40.63871 -39.44090 -37.67883 -37.17135 -35.20804 -34.24163 -33.62733 -31.89614 -30.51437 -29.32568 -28.90903 -26.95806 -25.80096 -24.09437 -23.98959 -22.55831 -21.01491 -20.94894 -20.02260 -18.82918 -18.65711 -18.32607 -17.49017 -17.28603 -16.87291 -16.55910 -16.34174 -16.03896 -15.71240 -15.51015 -15.03352 -14.79852 -14.62128 -14.51472 -14.39993 -14.31045 -14.12773 -13.72413 -13.40104 -13.32253 -13.06969 -12.96631 -12.77752 -12.64242 -12.58277 -12.49930 -12.29639 -12.15443 -12.09804 -11.67499 -11.27660 -10.78112 -10.68556 -10.62315 -10.23858 -9.92726 -9.49076 -8.94099 -8.27055 -6.40552 0.24958 0.42310 1.29801 1.32845 1.36368 1.43664 1.44939 1.71502 1.79810 2.28329 2.41428 2.88359 3.02982 3.08018 3.22714 3.49725 3.72731 3.96077 4.05602 4.09047 4.22785 4.28686 4.33260 4.42498 4.45845 4.47380 4.51008 4.58150 4.64404 4.69022 4.74793 4.89484 5.02209 5.08837 5.11488 5.21136 5.22026 5.43319 5.49098 5.55622 5.59690 5.74877 5.77778 5.99477 6.01583 6.02989 6.09694 6.65497 6.74736 6.87808 7.24403 7.41854 8.79911 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.004158 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.560117 B = 6733.099766 C = 8178.272043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.179 4.179 3 C 0.121 3.879 4 N -0.593 5.593 5 C 0.266 3.734 6 C -0.541 4.541 7 H 0.046 0.954 8 C 0.014 3.986 9 N -0.923 5.923 10 Si 0.956 3.044 11 H -0.275 1.275 12 H -0.264 1.264 13 H -0.282 1.282 14 C 0.499 3.501 15 O -0.588 6.588 16 C -0.108 4.108 17 H 0.178 0.822 18 C -0.138 4.138 19 C 0.503 3.497 20 O -0.553 6.553 21 N -0.557 5.557 22 C 0.146 3.854 23 C -0.188 4.188 24 C -0.100 4.100 25 C -0.148 4.148 26 C -0.093 4.093 27 C -0.163 4.163 28 C 0.108 3.892 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.024 0.976 35 H -0.001 1.001 36 H 0.267 0.733 37 H 0.104 0.896 38 H 0.174 0.826 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.411 -12.547 -15.860 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.198 4.198 3 C 0.000 4.000 4 N -0.322 5.322 5 C 0.145 3.855 6 C -0.580 4.580 7 H 0.064 0.936 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.781 3.219 11 H -0.199 1.199 12 H -0.189 1.189 13 H -0.208 1.208 14 C 0.288 3.712 15 O -0.469 6.469 16 C -0.129 4.129 17 H 0.195 0.805 18 C -0.178 4.178 19 C 0.294 3.706 20 O -0.432 6.432 21 N -0.279 5.279 22 C 0.052 3.948 23 C -0.208 4.208 24 C -0.119 4.119 25 C -0.167 4.167 26 C -0.112 4.112 27 C -0.184 4.184 28 C -0.013 4.013 29 H 0.135 0.865 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.042 0.958 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.191 0.809 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.892 -11.951 -15.431 21.053 hybrid contribution -0.121 1.418 0.895 1.681 sum 7.771 -10.534 -14.537 19.562 Atomic orbital electron populations 1.24053 0.95862 1.02681 0.98580 1.23338 0.96595 0.98281 1.01589 1.21083 0.92840 0.96750 0.89368 1.48134 1.11614 1.59368 1.13085 1.18666 0.94028 0.92218 0.80609 1.21705 1.40366 0.94808 1.01120 0.93553 1.25709 0.94748 1.03069 0.95015 1.70028 1.42800 1.37797 1.05695 0.85538 0.78388 0.80054 0.77888 1.19940 1.18906 1.20813 1.21026 0.81573 0.77977 0.90659 1.90673 1.53778 1.58222 1.44208 1.22449 0.98474 1.00712 0.91300 0.80453 1.22609 0.92103 0.99752 1.03294 1.21716 0.90321 0.82363 0.76249 1.90586 1.78512 1.24970 1.49171 1.45940 1.06469 1.21995 1.53467 1.18115 0.82062 0.96809 0.97836 1.21646 0.96146 0.99204 1.03855 1.21311 0.92999 0.99588 0.97985 1.21480 1.01460 0.94942 0.98817 1.21354 0.92997 0.98420 0.98387 1.21085 0.96000 1.00462 1.00824 1.22454 0.87490 0.87984 1.03412 0.86466 0.88953 0.85424 0.91000 0.86672 0.95777 0.98327 0.92369 0.87814 0.80902 0.85253 0.84094 0.83048 0.82686 0.84341 0.84515 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 14.32 67.78 0.97 -2.63 16 2 C -0.18 -3.92 9.67 25.65 0.25 -3.68 16 3 C 0.12 3.35 5.30 85.63 0.45 3.81 16 4 N -0.59 -23.34 2.43 -830.53 -2.02 -25.36 16 5 C 0.27 14.04 5.16 85.63 0.44 14.48 16 6 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 7 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 8 C 0.01 0.82 5.46 84.65 0.46 1.28 16 9 N -0.92 -55.95 13.29 21.44 0.28 -55.66 16 10 Si 0.96 46.31 29.54 68.60 2.03 48.34 16 11 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 14 C 0.50 18.84 6.99 87.66 0.61 19.45 16 15 O -0.59 -28.88 15.11 -3.04 -0.05 -28.92 16 16 C -0.11 -2.41 2.63 -10.48 -0.03 -2.44 16 17 H 0.18 2.07 7.63 -2.39 -0.02 2.05 16 18 C -0.14 -3.05 5.12 30.59 0.16 -2.89 16 19 C 0.50 16.09 7.92 87.90 0.70 16.79 16 20 O -0.55 -21.72 14.82 -3.04 -0.05 -21.77 16 21 N -0.56 -16.48 3.14 -627.69 -1.97 -18.45 16 22 C 0.15 4.50 6.60 38.15 0.25 4.75 16 23 C -0.19 -6.00 9.29 22.39 0.21 -5.79 16 24 C -0.10 -2.54 10.04 22.25 0.22 -2.31 16 25 C -0.15 -3.12 10.04 22.29 0.22 -2.89 16 26 C -0.09 -1.98 10.04 22.25 0.22 -1.76 16 27 C -0.16 -4.19 9.42 22.39 0.21 -3.98 16 28 C 0.11 2.39 5.84 86.83 0.51 2.90 16 29 H 0.12 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.09 2.02 7.84 -2.91 -0.02 2.00 16 31 H 0.13 2.24 7.82 -2.91 -0.02 2.21 16 32 H 0.07 2.24 7.72 -2.39 -0.02 2.22 16 33 H 0.12 2.32 4.48 -2.39 -0.01 2.31 16 34 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 35 H 0.00 -0.09 7.42 -2.39 -0.02 -0.10 16 36 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.10 2.69 6.27 -2.39 -0.01 2.67 16 38 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.13 4.69 5.26 -2.91 -0.02 4.68 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.14 3.07 6.75 -2.91 -0.02 3.05 16 44 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 2.31 6.11 -2.38 -0.01 2.29 16 Total: -1.00 -85.50 372.87 5.33 -80.17 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.00 Total: 17.78 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.10 Total: 3.88 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -3.71 Total: -99.47 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.09 Total: -50.69 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -85.50 5.33 -80.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553102991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.325 kcal (2) G-P(sol) polarization free energy of solvation -85.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds